BAC Information

Click to search

BAC

Clone NameB6Ng01-120M23
Chromosome3 (Build37)
Map Location 6,768,423 - 6,769,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120M23.bB6Ng01-120M23.g
ACCDH924654DH924655
length1,135478
definitionDH924654|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M23, 5' end.DH924655|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagctcagggttggcctcaaggattttctaggaaccactggaa
cactggtggaggcttagctatatgtcaaaatcaatccttaaaggcactta
taataaaacaatactgaaagagagcacacggatccatacaccagactatc
acagggacaggttttgagtatatgggctatgggaatgccaaggtttcagg
aggctaagtttccatgaaactctttgcctcgtggctgcttccaggctttt
aagcctaccaagcagacttcactggagtggatgtagcagaatctcagtct
tcatgccacagtgatgcattcacaactcagttcattgttcctctacacaa
tagtcaagctgtaatcagccaagcccatcaacaatgaagagatatggaaa
tgtgaaaatgtgagaggtttttttcttgttgttgtttttggttttgtttt
tttgtttttttggtttggtttgttttatatcagcacatgtgggtattttt
caagcaagtttaaacacaaaattacatttgtagggacttagatggagact
gttgcatccataaccatggaatttaaacttttaaaacacatgtgttatgg
ctaaccataattaactgtcaactttagcatacctatgttagactaatttt
tgatcaatgctggagatattattctagatcaagttagtggaattgggaat
atccattctaaattttggaaataccactcaaggtgtttgagactgaatga
aaagaaaaatactgaacaccctcctttcttcctagttcctcactttgagt
agagcttcatgctttctttacctggaattccctgctatgattcactgtac
cctcatgtgtaagtttagacaagcccttctttccttcagtaattatttaa
ttgtgtgtgtaaatatgggcatagttaaataaataataccaatgagccag
catattttttcaagaacaaggaccttctaacaaaacatcaaaccagccat
ggaggtgtcctctttttgagtttttcaagatggttctagagactgccaaa
acatttaaaaggcttatgggctagtggtccttgtttaattcccaaatgtt
aaaaggtaactggtctttatttaggggtttagctg

cagggatgaaaatggtgaggatcctgaggaataaaggtccagcaagaggc
ccaaagtgggatccagcacaaggggaggtcccaaggccagacagtattac
tggggctgtgaaacactcacaagagggcactccagaagacccaacaggct
gctgaaagagtcagatgcagatatttgcatttgtctaagcaatggacaga
agcttctgatctcctgaattatggaaaagctggcagaaactgaggaggaa
ggtgaccctgcaggaggaccagcattttcaaataacctggatccctgaaa
tctctcaaacagtggaccactgacttggcaacatacactaggtgatatga
ggctaccaacacttacacagcagaggactgccaggtctgggttcagtcag
agaagatgcatctaaccgtcaaccgactggaggtcccagggagtttagag
gtctgtttgggtgtgggatggggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6768423_6769550
seq2: B6Ng01-120M23.b_49_1183

seq1  GAATTCCAAGCTCAGGGTTGGCCTCAAGGATTTTCTAGGAACCACTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCAGGGTTGGCCTCAAGGATTTTCTAGGAACCACTGGAA  50

seq1  CACTGGTGGAGGCTTAGCTATATGTCAAAATCAATCCTTAAAGGCACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGGAGGCTTAGCTATATGTCAAAATCAATCCTTAAAGGCACTTA  100

seq1  TAATAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACAATACTGAAAGAGAGCACACGGATCCATACACCAGACTATC  150

seq1  ACAGGGACAGGTTTTGAGTATATGGGCTATGGGAATGCCAAGGTTTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACAGGTTTTGAGTATATGGGCTATGGGAATGCCAAGGTTTCAGG  200

seq1  AGGCTAAGTTTCCATGAAACTCTTTGCCTCGTGGCTGCTTCCAGGCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGTTTCCATGAAACTCTTTGCCTCGTGGCTGCTTCCAGGCTTTT  250

seq1  AAGCCTACCAAGCAGACTTCACTGGAGTGGATGTAGCAGAATCTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTACCAAGCAGACTTCACTGGAGTGGATGTAGCAGAATCTCAGTCT  300

seq1  TCATGCCACAGTGATGCATTCACAACTCAGTTCATTGTTCCTCTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCACAGTGATGCATTCACAACTCAGTTCATTGTTCCTCTACACAA  350

seq1  TAGTCAAGCTGTAATCAGCCAAGCCCATCAACAATGAAGAGATATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGCTGTAATCAGCCAAGCCCATCAACAATGAAGAGATATGGAAA  400

seq1  TGTGAAAATGTGAGAGGTTTTTTTCTTGTTGTTGTTTTTGGTTTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATGTGAGAGGTTTTTTTCTTGTTGTTGTTTTTGGTTTTGTTTT  450

seq1  TTTGTTTTTTTGGTTTGGTTTGTTTTATATCAGCACATGTGGGTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTGGTTTGGTTTGTTTTATATCAGCACATGTGGGTATTTTT  500

seq1  CAAGCAAGTTTAAACACAAAATTACATTTGTAGGGACTTAGATGGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGTTTAAACACAAAATTACATTTGTAGGGACTTAGATGGAGACT  550

seq1  GTTGCATCCATAACCATGGAATTTAAACTTTTAAAACACATGTGTTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATCCATAACCATGGAATTTAAACTTTTAAAACACATGTGTTATGG  600

seq1  CTAACCATAATTAACTGTCAACTTTAGCATACCTATGTTAGACTAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATAATTAACTGTCAACTTTAGCATACCTATGTTAGACTAATTTT  650

seq1  TGATCAATGCTGGAGATATTATTCTAGATCAAGTTAGTGGAATTGGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATGCTGGAGATATTATTCTAGATCAAGTTAGTGGAATTGGGAAT  700

seq1  ATCCATTCTAAATTTTGGAAATACCACTCAAGGTGTTTGAGACTGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCTAAATTTTGGAAATACCACTCAAGGTGTTTGAGACTGAATGA  750

seq1  AAAGAAAAATACTGAACACCCTCCTTTCTTCCTAGTTCCTCACTTTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAATACTGAACACCCTCCTTTCTTCCTAGTTCCTCACTTTGAGT  800

seq1  AGAGCTTCATGCTTTCTTTACCTGGAATTCCCTGCTATGATTCACTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCATGCTTTCTTTACCTGGAATTCCCTGCTATGATTCACTGTAC  850

seq1  CCTCATGTGTAAGTTTAGACAAGCCCTTCTTTCCTTCAGTAATTATTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTGTAAGTTTAGACAAGCCCTTCTTTCCTTCAGTAATTATTTAA  900

seq1  TTGTGTGTGTAAATAT-GGCATAGTTAAATAAATAATACCAATTGAGCCA  949
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TTGTGTGTGTAAATATGGGCATAGTTAAATAAATAATACCAA-TGAGCCA  949

seq1  GCAATATTTTTTCAAGAACCAAGGACCTTCTAACAAAAACATCAAAACCA  999
      || ||||||||||||||| ||||||||||||||| |||||||| ||||||
seq2  GC-ATATTTTTTCAAGAA-CAAGGACCTTCTAAC-AAAACATC-AAACCA  995

seq1  GCCAT-GAGGTGTCCTC-TTTTGAGTTTTTCAAGATTGTTCTAGAGACTG  1047
      ||||| ||||||||||| |||||||||||||||||| |||||||||||||
seq2  GCCATGGAGGTGTCCTCTTTTTGAGTTTTTCAAGATGGTTCTAGAGACTG  1045

seq1  CCAAAACATT--AAAGGC-TAT-GGCTAGT-GTCCTTGTTTAATCCCCAG  1092
      ||||||||||  |||||| ||| ||||||| ||||||||||||| |||| 
seq2  CCAAAACATTTAAAAGGCTTATGGGCTAGTGGTCCTTGTTTAATTCCCAA  1095

seq1  ATGTTAAAA-GTAACT-GTC-TTAGTTA-GGGTTTAGCTG  1128
      ||||||||| |||||| ||| ||| ||| |||||||||||
seq2  ATGTTAAAAGGTAACTGGTCTTTATTTAGGGGTTTAGCTG  1135


| Home | SequenceCutter | Blast | Download |