BAC Information

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BAC

Clone NameB6Ng01-120O05
Chromosome3 (Build37)
Map Location 55,714,786 - 55,883,179
singlet/doubletdoublet
Overlap genenone
Upstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O05.bB6Ng01-120O05.g
ACCDH924714DH924715
length1,0341,099
definitionDH924714|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O05, 5' end.DH924715|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,714,786 - 55,715,538)(55,882,061 - 55,883,179)
sequence
gaattcttattaccagttggaacttcttctggatatatgcccaggagagg
tattgctggatcctccggtagtactatgtccaattttctgaggaaccgcc
agactgatttccagagtggttgtacaagcttgcaatcccaccaacaatgg
aggagtgttcctctttctccacatcctcgccagcatctgctgtcacctga
atttttcatcttagccattctgactggtgtgaggtggaatctcagggttg
ttttgatttgcatttccctgatgattaaggatgttgaacattttttcagg
tgcttctctgccattcagtattcctcaggtgagaattctttgttcagttc
tgagccccattttttaatggggttatttgattttatggagttctttatat
atattggatattagtcccctatccgatttgggataggtaaagatcctttc
ccaatctgttggtggtctttttgtcttattgacgttgtcttttgccttgc
agaagctttgcaattttatgaggtcccatttattgattctcgatcttaca
gcacaagccattgctgttctattcagaaatttttcccctgtacccatatc
ttcgaggcttttccctactttctcctttataagtttcagtgtctctggtt
ttagaacactttctaaataggtgtatttttccatttgctttcttttccac
tatttctggtgggtggtgggctaaaagagaggttaaggcattagagaaca
atcattaaaaataaggtttgaaaaaattaaaagttacagatgagtttcag
tgttcataaaattccttttagtttgttttatacattgcaggccaaagtga
tcatcttctgaggctttttatatttgttaagacttgtcttctggctgact
gtgatctagcttggactatcttccctggtctgtggagacttacatatatt
ctgcgtctactacatcaatatgtttttgttttatcctctgcctcccacgc
atatgtttttgtgtatgtggtgtggttcagtgtg
gaattcatttcatacatttgcatttaattgtcccttgcagtgggtaagaa
tggggtaataagggtgctcatgtcacaaagccagtgacactgactgatga
ttctgatctctattttgctttgaaattggtacattttaggcaagatacag
cattcactcctatgaattagtttttaatgaacacacttggtaagtacggg
tagactttttaaaatcacatttggagttgtacagtttcagactatttgga
ggcgagacaatattatacagtataaatccaagctgagatgggcattggtg
gcgcacgcctttaatctctgagcttgtgaggcagagacaagtggatccct
gaggtccaggcaagcctggtctatagagtgagctccagtatagccactac
tacacagagaaactctgtctcaaaaaacaacaaaggaacaatcaaacaaa
tcaaagttgacaatgtttgaggagcacatgccataatttaaagtgttgct
gctttttaaaaagtttaatgtttaaattaatgggaagtttgttatggaag
agtaacaataaatattaaaatatacttttaaaacctttttatattcatat
ttctgttttattattttagtttagacatagaaataacaaaattattcttt
aaaagatcttagtgttcccagtgattttaataaccaaaatacttacagca
gtctttctgttttgtgtcacagtgacattacatgttgctatcttgtatcc
atttagttttatttgtttcactaggcctaggtaacaactggttttagtat
agtcattttaccccttataccacacccccattcaccttccttttattgaa
aataaattcctttctcacataatatatcctgaatactgcttcctgtcctc
tactcttcccagttgctcccacctcccctcccttctggatcactcccttt
ccccactagaaacagcttctagagaaactataaatgaaataagataaaac
aatagttacctcagatttggagaagcaaacatgaaagagccaaagaagcc
tactctcagagaaagacttgctccatactcagaatccataaaacactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55714786_55715538
seq2: B6Ng01-120O05.b_333_1083

seq1  TTGAACATTTTTTCAGGTGCTTCTCTGCCATTCAGTATTCCTCAGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTTTTTCAGGTGCTTCTCTGCCATTCAGTATTCCTCAGGTGAG  50

seq1  AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT  100

seq1  TATGGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGA  150

seq1  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC  200

seq1  GTTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTAT  250

seq1  TGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGAAATTTT  300

seq1  TCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTTTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTTTATAAG  350

seq1  TTTCAGTGTCTCTGGTTTTAGAACACTTTCTAAATAGGTGTATTTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTCTCTGGTTTTAGAACACTTTCTAAATAGGTGTATTTTTCCA  400

seq1  TTTGCTTTCTTTTCCACTATTTCTGGTGGGTGGTGGGCTAAAAGAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTTTTCCACTATTTCTGGTGGGTGGTGGGCTAAAAGAGAGGT  450

seq1  TAAGGCATTAGAGAACAATCATTAAAAATAAGGTTTGAAAAAATTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTAGAGAACAATCATTAAAAATAAGGTTTGAAAAAATTAAAAG  500

seq1  TTACAGATGAGTTTCAGTGTTCATAAAATTCCTTTTAGTTTGTTTTTATA  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTACAGATGAGTTTCAGTGTTCATAAAATTCCTTTTAGTTTG-TTTTATA  549

seq1  CATTGCAGGCCAAAGTGATCATCTTCTGAGGCTTTTTATATTTGTTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGGCCAAAGTGATCATCTTCTGAGGCTTTTTATATTTGTTAAGA  599

seq1  CTTGTCTTCTGGCTGACTGTGATCTAGCTTGGACTATCTTCCCTGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCTGGCTGACTGTGATCTAGCTTGGACTATCTTCCCTGGTCTG  649

seq1  TGGAGACTTACATATATTCTGCGTCTACTACATCAATATGCTTTTGTTTT  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAGACTTACATATATTCTGCGTCTACTACATCAATATGTTTTTGTTTT  699

seq1  ATCCTCTGCCTCCCACGCATATGTTTGTGTGTATGTGTGTGT-GTTCATG  749
      |||||||||||||||||||||||||| |||||||||| |||| ||||| |
seq2  ATCCTCTGCCTCCCACGCATATGTTTTTGTGTATGTG-GTGTGGTTCA-G  747

seq1  TGTG  753
      ||||
seq2  TGTG  751

seq1: chr3_55882061_55883179
seq2: B6Ng01-120O05.g_66_1164 (reverse)

seq1  TTAGTGGTTTTATGGGATTCCTGAGTATGGAAGCAAGTCTTTCTCTGAGA  50
      ||||| ||||||| ||||| |||||||||| |||||||||||||||||||
seq2  TTAGT-GTTTTAT-GGATT-CTGAGTATGG-AGCAAGTCTTTCTCTGAGA  46

seq1  GTTAGGCCTTCTCTTGGGCTCTTTTCCTTGTTTGTCTTCTCCAAATCTGA  100
      | |||||    |||| ||||||||  | |||||| |||||||||||||||
seq2  G-TAGGC---TTCTTTGGCTCTTT--CATGTTTG-CTTCTCCAAATCTGA  89

seq1  TGTTAACTATTGTTTTATCTTATTTCATTTTATTAGTATCTCTTAGAAGC  150
       | |||||||||||||||||||||||||||   |||| |||| |||||| 
seq2  -GGTAACTATTGTTTTATCTTATTTCATTT--ATAGTTTCTC-TAGAAG-  134

seq1  CTGTTTTCTAGTGTGAGAAAGGGAGTGAATCCAGAAGGGAGGGGAGGTGG  200
      ||| ||||||||| | ||||||||||| ||||||||||||||||||||||
seq2  CTG-TTTCTAGTG-GGGAAAGGGAGTG-ATCCAGAAGGGAGGGGAGGTGG  181

seq1  GAGCAACTGGGAAGAGTAGAGGGACAGGAAGCAGTATTCAGGATATATTA  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGCAACTGGGAAGAGTAGA-GGACAGGAAGCAGTATTCAGGATATATTA  230

seq1  TGTGAGAAAGGAATTTATTTTCAATAAAAGGAAGGTGAATGGGGGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAAGGAATTTATTTTCAATAAAAGGAAGGTGAATGGGGGTGTGG  280

seq1  TATAAGGGGTAAAATGACTATACTAAAACCAGTTGTTACCTAGGCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGGTAAAATGACTATACTAAAACCAGTTGTTACCTAGGCCTAGT  330

seq1  GAAACAAATAAAACTAAATGGATACAAGATAGCAACATGTAATGTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATAAAACTAAATGGATACAAGATAGCAACATGTAATGTCACTG  380

seq1  TGACACAAAACAGAAAGACTGCTGTAAGTATTTTGGTTATTAAAATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAAAACAGAAAGACTGCTGTAAGTATTTTGGTTATTAAAATCACT  430

seq1  GGGAACACTAAGATCTTTTAAAGAATAATTTTGTTATTTCTATGTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACTAAGATCTTTTAAAGAATAATTTTGTTATTTCTATGTCTAAA  480

seq1  CTAAAATAATAAAACAGAAATATGAATATAAAAAGGTTTTAAAAGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAATAAAACAGAAATATGAATATAAAAAGGTTTTAAAAGTATAT  530

seq1  TTTAATATTTATTGTTACTCTTCCATAACAAACTTCCCATTAATTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTATTGTTACTCTTCCATAACAAACTTCCCATTAATTTAAAC  580

seq1  ATTAAACTTTTTAAAAAGCAGCAACACTTTAAATTATGGCATGTGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTTTTAAAAAGCAGCAACACTTTAAATTATGGCATGTGCTCCT  630

seq1  CAAACATTGTCAACTTTGATTTGTTTGATTGTTCCTTTGTTGTTTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGTCAACTTTGATTTGTTTGATTGTTCCTTTGTTGTTTTTTGA  680

seq1  GACAGAGTTTCTCTGTGTAGTAGTGGCTATACTGGAGCTCACTCTATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTTTCTCTGTGTAGTAGTGGCTATACTGGAGCTCACTCTATAGA  730

seq1  CCAGGCTTGCCTGGACCTCAGGGATCCACTTGTCTCTGCCTCACAAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTGCCTGGACCTCAGGGATCCACTTGTCTCTGCCTCACAAGCTC  780

seq1  AGAGATTAAAGGCGTGCGCCACCAATGCCCATCTCAGCTTGGATTTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAAGGCGTGCGCCACCAATGCCCATCTCAGCTTGGATTTATAC  830

seq1  TGTATAATATTGTCTCGCCTCCAAATAGTCTGAAACTGTACAACTCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATTGTCTCGCCTCCAAATAGTCTGAAACTGTACAACTCCAAA  880

seq1  TGTGATTTTAAAAAGTCTACCCGTACTTACCAAGTGTGTTCATTAAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTAAAAAGTCTACCCGTACTTACCAAGTGTGTTCATTAAAAAC  930

seq1  TAATTCATAGGAGTGAATGCTGTATCTTGCCTAAAATGTACCAATTTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATAGGAGTGAATGCTGTATCTTGCCTAAAATGTACCAATTTCAA  980

seq1  AGCAAAATAGAGATCAGAATCATCAGTCAGTGTCACTGGCTTTGTGACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAGAGATCAGAATCATCAGTCAGTGTCACTGGCTTTGTGACAT  1030

seq1  GAGCACCCTTATTACCCCATTCTTACCCACTGCAAGGGACAATTAAATGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCTTATTACCCCATTCTTACCCACTGCAAGGGACAATTAAATGC  1080

seq1  AAATGTATGAAATGAATTC  1119
      |||||||||||||||||||
seq2  AAATGTATGAAATGAATTC  1099