BAC Information

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BAC

Clone NameB6Ng01-121N05
Chromosome3 (Build37)
Map Location 10,527,381 - 10,659,880
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N05.bB6Ng01-121N05.g
ACCDH925410DH925411
length1,0161,093
definitionDH925410|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N05, 5' end.DH925411|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,659,306 - 10,659,880)(10,527,381 - 10,528,446)
sequence
gaattctaagacaaaaagtgaaaaatctgaccagtggacattttaagaac
tcctgctcataattacataaattgctaatcttgaagctccagagagctgc
ccaatcttaagtactttcagtagcatttgaaggtctgtttggttgaagtc
acagataatatgtcaaattaaatgtcctattctagcgcattaatcagcct
taagactgaaaaaaaaaaaatgtctccacacggcaggtgcctagcacgcc
caggatcttaggatcactggtaagtggaactcaacttctgttccaaacca
atcctgtcaggcctgtgacatcaggagcaaggacacaggaacctagtggc
tagggttccttttggtcagtgctggtataccttagtttcgaatacatcag
acagccccatgtttgccagaggagacaccacttctaggcgctgacaacac
gcccaggatcttaggatttcaggataccagaataccaggagcttgatcac
acccgggtctcaggggtgcagaggaagttcaactgccaaaaattctgaca
cacccagaatctcaggttcacaggatcccagaatcaacaggatcacagag
aaagctggactctgaggagtcctgaatcaaccgggattacaggaaagaca
ggctacaatcagatatattgaaggcagaaagcacgtgagataatcagatg
gcaataaaaagacatagattaacagactggttatgtaaacaagatccgac
tttttgctgcatacaagaaacctacctcagggacaaagacagacactacc
ttagaataaaaggctggaaaacaattttctaagcaaatggtctcaaaaaa
caagctggagtggccattctaaaataaaatcgactttcacctaaagttct
caaagaaagattaggagaggcattacttacacatcaaagataaaatttac
agatgaactctcattctgacatctatgctcaaatgcaaggcatcacattc
ataagaacttgctaaa
gaattctctgtttagttctgtactccatttttaaattgtgttatttgggc
tgttggtatctaaattcttgagttctttgtttgttttggatattaaccct
ctgttagatgtagcattagtgaaggtcctttcccaatctttaggctgcta
ttttgtcttgttgatggtgttctatgccttacagaagtttttcagtttca
tgaggttccatttattaactgttgatcttagtgcctgagctattggagtc
caaagctattctccatgttctcttttattagatttaatgtatctggtttt
atgttgaggtctttgatgcacttggacttgagttttgtgtagggtgacag
atatacatttatttgcattattctaaatgcaggcgtgtgggtttatttct
gagtcttcaattcaattccattgatcaccctgtctgtttctataccaata
caatacagcttttattactattgctctgtagtacagcttgaggtcaaata
tggtgagtattttaataaaaatattattcaataactgcacatagcttaag
atgagtcaaattaaaatcctacgataagctgctttcccacacctctccac
cacaaatcctcccacatgagtttctttacacttttgtgttacattcctgt
ggcaaccaagcaaaccaattataaactcactgaattaaataaaagaaata
taatattttaaaattctgaaggttataagtataaaattattatcacaaag
ttgaaatggaggtgctggtagaggaaaacaccttttggaggataattcct
acttcatccagacccaaaagcattacaaacatttctttctgtgcttagta
gcttttgtgataggtaagcaattgagattacacgttgtttgtctagatga
tgatggttccagacttcctgtgttatggctgcattgctagactttgagtc
tgtggtcatgaggtctctctgtctctgcattgatattaaccactgccttc
ttcttaaatctaaccttttttgagaatgtaatgcatgagtatggtatttt
atgctaatttcattgtctttacccttcgactccccccattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10659306_10659880
seq2: B6Ng01-121N05.b_47_621 (reverse)

seq1  TCCTGTGAACCTGAGATTCTGGGTGTGTCAGAATTTTTGGCAGTTGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAACCTGAGATTCTGGGTGTGTCAGAATTTTTGGCAGTTGAACT  50

seq1  TCCTCTGCACCCCTGAGACCCGGGTGTGATCAAGCTCCTGGTATTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCACCCCTGAGACCCGGGTGTGATCAAGCTCCTGGTATTCTGGT  100

seq1  ATCCTGAAATCCTAAGATCCTGGGCGTGTTGTCAGCGCCTAGAAGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAATCCTAAGATCCTGGGCGTGTTGTCAGCGCCTAGAAGTGGTG  150

seq1  TCTCCTCTGGCAAACATGGGGCTGTCTGATGTATTCGAAACTAAGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGGCAAACATGGGGCTGTCTGATGTATTCGAAACTAAGGTATA  200

seq1  CCAGCACTGACCAAAAGGAACCCTAGCCACTAGGTTCCTGTGTCCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGACCAAAAGGAACCCTAGCCACTAGGTTCCTGTGTCCTTGCT  250

seq1  CCTGATGTCACAGGCCTGACAGGATTGGTTTGGAACAGAAGTTGAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTCACAGGCCTGACAGGATTGGTTTGGAACAGAAGTTGAGTTCC  300

seq1  ACTTACCAGTGATCCTAAGATCCTGGGCGTGCTAGGCACCTGCCGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAGTGATCCTAAGATCCTGGGCGTGCTAGGCACCTGCCGTGTGG  350

seq1  AGACATTTTTTTTTTTTCAGTCTTAAGGCTGATTAATGCGCTAGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTTTTTTTTCAGTCTTAAGGCTGATTAATGCGCTAGAATAGG  400

seq1  ACATTTAATTTGACATATTATCTGTGACTTCAACCAAACAGACCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATTTGACATATTATCTGTGACTTCAACCAAACAGACCTTCAAA  450

seq1  TGCTACTGAAAGTACTTAAGATTGGGCAGCTCTCTGGAGCTTCAAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGAAAGTACTTAAGATTGGGCAGCTCTCTGGAGCTTCAAGATTA  500

seq1  GCAATTTATGTAATTATGAGCAGGAGTTCTTAAAATGTCCACTGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTATGTAATTATGAGCAGGAGTTCTTAAAATGTCCACTGGTCAGA  550

seq1  TTTTTCACTTTTTGTCTTAGAATTC  575
      |||||||||||||||||||||||||
seq2  TTTTTCACTTTTTGTCTTAGAATTC  575

seq1: chr3_10527381_10528446
seq2: B6Ng01-121N05.g_99_1160

seq1  TAAATTGTGTTATTTGGGCTGTTGGTATCTAAATTCTTGAGTTCTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTGTTATTTGGGCTGTTGGTATCTAAATTCTTGAGTTCTTTGTT  50

seq1  TGTTTTGGATATTAACCCTCTGTTAGATGTAGCATTAGTGAAGGTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGATATTAACCCTCTGTTAGATGTAGCATTAGTGAAGGTCCTTT  100

seq1  CCCAATCTTTAGGCTGCTATTTTGTCTTGTTGATGGTGTTCTATGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTTTAGGCTGCTATTTTGTCTTGTTGATGGTGTTCTATGCCTTA  150

seq1  CAGAAGTTTTTCAGTTTCATGAGGTTCCATTTATTAACTGTTGATCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTTTCAGTTTCATGAGGTTCCATTTATTAACTGTTGATCTTAG  200

seq1  TGCCTGAGCTATTGGAGTCCAAAGCTATTCTCCATGTTCTCTTTTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCTATTGGAGTCCAAAGCTATTCTCCATGTTCTCTTTTATTAG  250

seq1  ATTTAATGTATCTGGTTTTATGTTGAGGTCTTTGATGCACTTGGACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGTATCTGGTTTTATGTTGAGGTCTTTGATGCACTTGGACTTGA  300

seq1  GTTTTGTGTAGGGTGACAGATATACATTTATTTGCATTATTCTAAATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTAGGGTGACAGATATACATTTATTTGCATTATTCTAAATGCA  350

seq1  GGCGTGTGGGTTTATTTCTGAGTCTTCAATTCAATTCCATTGATCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGGGTTTATTTCTGAGTCTTCAATTCAATTCCATTGATCACCCT  400

seq1  GTCTGTTTCTATACCAATACAATACAGCTTTTATTACTATTGCTCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTCTATACCAATACAATACAGCTTTTATTACTATTGCTCTGTAG  450

seq1  TACAGCTTGAGGTCAAATATGGTGAGTATTTTAATAAAAATATTATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTGAGGTCAAATATGGTGAGTATTTTAATAAAAATATTATTCAA  500

seq1  TAACTGCACATAGCTTAAGATGAGTCAAATTAAAATCCTACGATAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCACATAGCTTAAGATGAGTCAAATTAAAATCCTACGATAAGCTG  550

seq1  CTTTCCCACACCTCTCCACCACAAATCCTCCCACATGAGTTTCTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACACCTCTCCACCACAAATCCTCCCACATGAGTTTCTTTACAC  600

seq1  TTTTGTGTTACATTCCTGTGGCAACCAAGCAAACCAATTATAAACTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTACATTCCTGTGGCAACCAAGCAAACCAATTATAAACTCACT  650

seq1  GAATTAAATAAAAGAAATATAATATTTTAAAATTCTGAAGGTTATAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATAAAAGAAATATAATATTTTAAAATTCTGAAGGTTATAAGTA  700

seq1  TAAAATTATTATCACAAAGTTGAAATGGAGGTGCTGGTAGAGGAAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTATCACAAAGTTGAAATGGAGGTGCTGGTAGAGGAAAACAC  750

seq1  C-TTTGGAGGATAATTCCTACTTCATCCAGACCCAAAAGCATTACAAACA  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAGGATAATTCCTACTTCATCCAGACCCAAAAGCATTACAAACA  800

seq1  TTTCTTTCTGTGCTTAGTAGCTTTTGTGAATAGGTAAGCAATTGAGAATA  849
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  TTTCTTTCTGTGCTTAGTAGCTTTTGTG-ATAGGTAAGCAATTGAGATTA  849

seq1  CACGTTG-TTGTCTAGATGATGATGGTTCCAGACTTCCTGTGTTATGGCT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGTTTGTCTAGATGATGATGGTTCCAGACTTCCTGTGTTATGGCT  899

seq1  GCATTGCTAGACTTTGAGTCTGTGGTCATGAGGTCTTCTCTGTCTCTGCA  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCATTGCTAGACTTTGAGTCTGTGGTCATGAGGTC-TCTCTGTCTCTGCA  948

seq1  -TGATATTAACCAACTGCCTTCTTCTTAAATCTAAACCTTTTTTTGAGAA  997
       ||||||||||| ||||||||||||||||||||||  | |||||||||||
seq2  TTGATATTAACC-ACTGCCTTCTTCTTAAATCTAA--CCTTTTTTGAGAA  995

seq1  TGTAATGCATGAGTATTGTATTTTATGCATAATTTTCATTGTCTTCACCC  1047
      |||||||||||||||| ||||||||||| ||| |||||||||||| ||||
seq2  TGTAATGCATGAGTATGGTATTTTATGC-TAA-TTTCATTGTCTTTACCC  1043

seq1  TTCAACTCCCCTCATTCTC  1066
      ||| ||||||| |||||||
seq2  TTCGACTCCCCCCATTCTC  1062