BAC Information

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BAC

Clone NameB6Ng01-122C10
Chromosome3 (Build37)
Map Location 6,380,961 - 6,382,145
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
Downstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122C10.bB6Ng01-122C10.g
ACCDH925654DH925655
length1,1501,137
definitionDH925654|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C10, 5' end.DH925655|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaactgagaaatcctgaatggctgagaagcacctaaaacaatg
ttcaatatccttaatcaccagggaaatgcaaatcaaaaacaatcctgaga
ttccaccttacaccaatcaaaatggctaagataaaaaactcaggtgaccc
cagatgctacaaggatcaaaacctcaggtgacaacatatgttggagagga
tatggagaaagaggaacagtcctccattgctggtggggttgcaagctggt
acaaccactctggttatctatttggcagttcgtctgtaaattcttaaata
gttcttaagtcctcaccagcttctttaattaacaaaatacatggcacaac
aatatgccaaaaatctccattcccaaaaatataaaacttgaattaaacaa
ctatacaaaccttgtctcaattcaattccacaagtcactaagcactggca
acttacattaattaaaaattatcatttctatgatttaaaaaaacaaagaa
acaaaaagaaccagccaagaacaagaaaacaaaacagatgtacaataaat
cagaatgcatattctttttttgtgatctcctgaagatattaaatagtgga
ttagttccatagatattagaaaaaaactttaatacttgcaacaagctttt
gtccaagcaactgttgaccatcaaaaatattctgcagccccaaatctctc
actgcctttaataatcacagtctgacaactatcattttttttcaccctgt
ttgactcacttacggaaacccatgtttgaacgtttgcatttttcttattg
cttcatgtgaagctgctctctccacacaactaaaggtaaagcaagtctcg
tttctatatctctgaatacctgatattgtatatctttgtttagagctatg
gcttctattaaatttaattacttacccctgtggctttaaattgagggtgg
ctataaaacaaggacagcatctattaaatttattactttccctgcgctgc
actggacggtggcttctattaaaactgcatggtatagtgtgtgcagagca
ggtgcttcgaatcagatctacatcgagtatatatcaggagagaatagtcg
gatatcacatgatatccatcctgaaattataaatctgaattctaggaaat

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctccatg
aggagctagagaagtacccaagagctaagggatctcaccctatagtgaca
acattatgactacagtaccctgagctctgactctagctgcatatgtatcc
aagatgctagtcgcatcacttgtaaagaaagtcaatgaccgcaaacttgc
gtgccgtaaggaacgccagccaacggagatggcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6380961_6382145
seq2: B6Ng01-122C10.b_47_1196

seq1  GAATTCTCAACTGAGAAATCCTGAATGGCTGAGAAGCACCTAAAACAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGAAATCCTGAATGGCTGAGAAGCACCTAAAACAATG  50

seq1  TTCAATATCCTTAATCACCAGGGAAATGCAAATCAAAAACAATCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATCCTTAATCACCAGGGAAATGCAAATCAAAAACAATCCTGAGA  100

seq1  TTCCACCTTACACCAATCAAAATGGCTAAGATAAAAAACTCAGGTGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTTACACCAATCAAAATGGCTAAGATAAAAAACTCAGGTGACCC  150

seq1  CAGATGCTACAAGGATCAAAACCTCAGGTGACAACATATGTTGGAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTACAAGGATCAAAACCTCAGGTGACAACATATGTTGGAGAGGA  200

seq1  TATGGAGAAAGAGGAACAGTCCTCCATTGCTGGTGGGGTTGCAAGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAAAGAGGAACAGTCCTCCATTGCTGGTGGGGTTGCAAGCTGGT  250

seq1  ACAACCACTCTGGTTATCTATTTGGCAGTTCGTCTGTAAATTCTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACTCTGGTTATCTATTTGGCAGTTCGTCTGTAAATTCTTAAATA  300

seq1  GTTCTTAAGTCCTCACCAGCTTCTTTAATTAACAAAATACATGGCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAGTCCTCACCAGCTTCTTTAATTAACAAAATACATGGCACAAC  350

seq1  AATATGCCAAAAATCTCCATTCCCAAAAATATAAAACTTGAATTAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCAAAAATCTCCATTCCCAAAAATATAAAACTTGAATTAAACAA  400

seq1  CTATACAAACCTTGTCTCAATTCAATTCCACAAGTCACTAAGCACTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAACCTTGTCTCAATTCAATTCCACAAGTCACTAAGCACTGGCA  450

seq1  ACTTACATTAATTAAAAATTATCATTTCTATGATTTAAAAAAACAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTAATTAAAAATTATCATTTCTATGATTTAAAAAAACAAAGAA  500

seq1  ACAAAAAGAACCAGCCAAGAACAAGAAAACAAAACAGATGTACAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAACCAGCCAAGAACAAGAAAACAAAACAGATGTACAATAAAT  550

seq1  CAGAATGCATATTCTTTTTTTGTGATCTCCTGAAGATATTAAATAGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCATATTCTTTTTTTGTGATCTCCTGAAGATATTAAATAGTGGA  600

seq1  TTAGTTCCATAGATATTAGAAAAAAACTTTAATACTTGCAACAAGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCCATAGATATTAGAAAAAAACTTTAATACTTGCAACAAGCTTTT  650

seq1  GTCCAAGCAACTGTTGACCATCAAAAATATTCTGCAGCCCCAAATCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCAACTGTTGACCATCAAAAATATTCTGCAGCCCCAAATCTCTC  700

seq1  ACTGCCTTTAATAATCACAGTCTGACAACTATCATTTTTTTTCACCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTTAATAATCACAGTCTGACAACTATCATTTTTTTTCACCCTGT  750

seq1  TTGACTCACTTACGGAAACCCATGTTTGAACGTTTGCATTTTTCTTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCACTTACGGAAACCCATGTTTGAACGTTTGCATTTTTCTTATTG  800

seq1  CTTCATGTGAAGCTGCTCTCTCCACACAACT-AAGGTAAAGCAAGTCTCG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCATGTGAAGCTGCTCTCTCCACACAACTAAAGGTAAAGCAAGTCTCG  850

seq1  TTTCTATATCTCTGAATACCTGATATTGTATATCTTTGTTTAGAAGCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTATATCTCTGAATACCTGATATTGTATATCTTTGTTTAG-AGCTAT  899

seq1  GGCTTCTATTAAATTTAATTACTTACCCCTGTGGCTTTAAATTGAGGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTATTAAATTTAATTACTTACCCCTGTGGCTTTAAATTGAGGGTG  949

seq1  GCTATAAAACAAGGACAGCATCTATTAAATTTAATTACTTTCCCCTGCGG  999
      |||||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  GCTATAAAACAAGGACAGCATCTATTAAATTT-ATTACTTT-CCCTGCG-  996

seq1  CCTGCACTGGACGGGTGGCTTCTATTAAAAACTGCATGGTATAGGTGTGG  1049
       ||||||||||| ||||||||||||| |||||||||||||||| ||||| 
seq2  -CTGCACTGGAC-GGTGGCTTCTATT-AAAACTGCATGGTATA-GTGTG-  1041

seq1  TTGCAGAGCAAGGGTGCTTCGAAATCAAGATCTACCATCAGAGGTAATAA  1099
       |||||||||  ||||||||| |||| ||||||| |||| |||      |
seq2  -TGCAGAGCA--GGTGCTTCG-AATC-AGATCTA-CATC-GAG-----TA  1079

seq1  TTAATCAAGGAGAGAATTTAGGTACAGAAATAATCACATGATAATTCCAT  1149
      |  ||| |||||||||  |||   | ||    |||||||||||  |||||
seq2  TATATC-AGGAGAGAA--TAG--TCGGA---TATCACATGATA--TCCAT  1119

seq1  CTCTAAAATTTATTAAAATCTGAATTCTAAGGAAAT  1185
      | || ||| ||||  ||||||||||||| |||||||
seq2  C-CTGAAA-TTAT--AAATCTGAATTCT-AGGAAAT  1150