BAC Information

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BAC

Clone NameB6Ng01-122J01
Chromosome3 (Build37)
Map Location 12,857,614 - 12,858,754
singlet/doubletsinglet
Overlap geneEG668033
Upstream geneEG621965, LOC100039798
Downstream geneLOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122J01.bB6Ng01-122J01.g
ACCDH925956DH925957
length1,1271,198
definitionDH925956|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J01, 5' end.DH925957|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgaaaaatgc
tttaatgaaaaaaacattctgaaaattcatcagagaattcatacaggaga
gagaccttacaaatgtagtgaatgtgacaaatgcttttcccgaaaattcc
atcttggtatttatcagagaattcatacaggaaagaaaccttacaaatgt
agtgaatgtgacaaatgctttacccagaaatcccatcttagtattcatca
gaaaattcatacaggagagaaaccttacaaatagaatgtatgtgacaaat
acaatactcacaatgtcagtcttagaaatcatcagttatttcatacagta
gagaatctttataaatgaagtgaacgagacaattctttaccaagatatat
catctcaaaattcattagagaatacttagagaagacaaacttttcaaata
tattgtaggtatgaatcctttccttttggcctatttcctagactgtaaca
gtgaatacttacaggctagaaacttaactcatgcattatatgaagaaata
tctttgacttcatttcaggtcagagagaacatctaagaactttttagggt
aaagtatttctgttggggaaaatgttgtattcttgacaacacttgaggct
ccacactagagaattagtatgattatgaaaatcttgtgaaaatattcatg
caatgttcaaatcttagataatgtcaactatttatgttgggagaaactct
gaaaatgtgaaaatgtagaaagcttttcatgacacctttttacttgttca
ccctcaaacgttataagatgaagataagttaggaagtcagaagatagtat
tgtataacactttcattgagacagaaataatccatttcaaaaggaaacta
tttaaggtctttaatacaaccctcaaataggtaataaaactggtaggcat
ttgtatatttttattgtcctgtaactaactccaataaaactgaaaaattc
acaataaataaaaaaaaagaaatagtaggataacataaattaacacttca
tggctgttgaggtaatagaaatcttgtacagtcgttcatacaaaagattg
aaaggttcttaaaaaattaaaaccaat
gaattctttagcagtttaacctcctttctatccaccacccatcagaggca
gtggaaaggaaaggttaataaggtaaaggacaatgtggaactatttagaa
atagttttttttttggggggggatgccaatctttgttgtcagaatatcag
cagttcaattgatataaatcagcagcaatgctagcttcatttgctttcaa
acaccattcacttattagtaacagcagttttatccagaagaaactgcaag
gctctcttcaaccaagtcagaaaaagtggcaagaagccataccaagacca
gcaccaagagtggcgaggagaatcaagaagaactcataattctgaacatc
tatgccccagatgcaagggaaaccacattcataaaagtaactttactaaa
gctcaaaacacacattgcatctaatacagtaagagtgagagatttcaaca
ccacactctgatcaatggacagataatggaaatagaaactaaaaagagac
acagtgaaactaatagaagttacaaagcaaaaggatttaacagatatcta
tagaacatttcatcctaaaacaaaagaatatactttcttctcagcacctc
atgataccttctccaacattgaccatataatctatcaaacaacaggcctc
aacagatacaagaacattgccataattccatgcaacctatcagatcacca
tatactaagattggacttcaataactacaaaatcaacaaaaaacccaaac
acacatggaagctgaaaaaaaaatctactcaatgataactaggtcaaaaa
agaaataaagaaagaaattaaagatttttagaatgtaatgaaaatgaagg
caccccatacccaaatttgtaggaatcagtgtagacagtgctagggagaa
aactgaaaacactgagtgtcctccaacaagaaaactggaaaaagcataca
ctagcagcttaacagcgtacctggaaagctataagacaaaggaagcatac
acccacaaaggagtagagtagaaaatatcaaactcagggctgaataaaca
tagaaacaaaagactaacaagatcacaatcagggctggtcatgagaaatc
aacaggatagattaacccttagcaggccttaaccgatgtcaagaacggta
tctattaccaatgatacgtaaagaagaacttgatgcacatgtatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12857614_12858754
seq2: B6Ng01-122J01.b_46_1172

seq1  GAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGC  50

seq1  TTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGA  100

seq1  GAGACCTTACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCC  150

seq1  ATCTTGGTATTTATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTATTTATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGT  200

seq1  AGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCA  250

seq1  GAAAATTCATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAAT  300

seq1  ACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTA  350

seq1  GAGAATCTTTATAAATGAAGTGAACGAGACAATTCTTTACCAAGATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTTTATAAATGAAGTGAACGAGACAATTCTTTACCAAGATATAT  400

seq1  CATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATA  450

seq1  TATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACA  500

seq1  GTGAATACTTACAGGCTAGAAACTTAACTCATGCATTATATGAAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACTTACAGGCTAGAAACTTAACTCATGCATTATATGAAGAAATA  550

seq1  TCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGT  600

seq1  AAAGTATTTCTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTCTGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCT  650

seq1  CCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATG  700

seq1  CAATGTTCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCT  750

seq1  GAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  800

seq1  CCCTCAAACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTAT  850

seq1  TGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTA  900

seq1  TTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCAT  950
      |||||||||||||||||||||||| ||||||||||||||||||||||   
seq2  TTTAAGGTCTTTAATACAACCCTC-AAATAGGTAATAAAACTGGTAGGCA  949

seq1  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAAATT  999

seq1  CAACAAAAAAAAAAAAAAAAAAAAAAAGAAAAATAGTAAGGATAAACATA  1050
      | |||| ||| ||||||||         | ||||||| ||||| ||||||
seq2  C-ACAATAAATAAAAAAAA---------AGAAATAGT-AGGAT-AACATA  1037

seq1  AATTTAACACTTTCAT-GCTGTTTGAGGTAATAGAAATC-TGTACAGTCG  1098
      || ||||||| ||||| |||| ||||||||||||||||| ||||||||||
seq2  AA-TTAACAC-TTCATGGCTG-TTGAGGTAATAGAAATCTTGTACAGTCG  1084

seq1  -TCATACAAAAAGATGAAAGTTTCTTAAAATATTAAAAACCAAT  1141
       ||||||||||   |||||| ||||||||| ||| |||||||||
seq2  TTCATACAAAAGATTGAAAGGTTCTTAAAAAATT-AAAACCAAT  1127