BAC Information

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BAC

Clone NameB6Ng01-123A03
Chromosome3 (Build37)
Map Location 52,758,349 - 52,846,766
singlet/doubletdoublet
Overlap geneCog6, Lhfp
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneLOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A03.bB6Ng01-123A03.g
ACCDH926290DH926291
length1,1361,108
definitionDH926290|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A03, 5' end.DH926291|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,845,620 - 52,846,766)(52,758,349 - 52,759,459)
sequence
gaattcatttcacatactcacattaaaagcaatgtagcattttttactag
caggagacataattccggatattaaaataaaatggaccatacagtagttt
gtttatttggcttgcaagttcacacttagtttctagccactcctcggcat
cacttgatgagtgtgccaaccaagcaacatgatagtgggaacttcataca
attacagaagtactgtaaatttaactaacagtattcaccactcaggtgta
tacattggatatatagttacacacccccagttactgtaaatttaactaac
agtattcaccactcgggtgtatatatcgggtgatatatagttacacaccc
ccagtactcgataacactaaaaacgccttctgtcttaattttccggggca
aatgtgttcacgcctcctattttgactccttggcttcagtgctttcacct
gctggccatttcagaccaagcactcactcttttccaatacctaatgtcaa
gtcagctattcaaaagggttcgatgaggtgggctggcttgcacacctggc
tacactctccacaaagaacacagaagaacacccccaccccgtcgggttcc
atctgcaaactgcttccaaactccagtctcctacactttgctcgccctct
gttctggattctacccaaaggggagctccctctggctacggtttttaaaa
tcgtgtcagctgtgagcagaggctgaagttgagttggtctgggggttacc
attaaaggtggggagtgggaagaaagggacctctttctcagctggagtga
gttaccctagtccagatgaacttaaacccaccatcctcccccaaaactgc
tagacgcacgcaccgcaccctggagcacacaggaacacacacaatgatct
ctggatgcaaagcggcacggggaagttcttgcagccggctctgagaaagg
gacggatacgatggaaaggaaggcagcacccccggagccgacaggacctc
agctgaactttgccactcgaaagacaggaggaacccgggcacggggctcg
gggcgcgctacttacccgtcggcggcggccgccgtccctccgcagtccgg
gccagcaaacttgctgtctttccctggcgggacagc
gaattccacgggaagcttacctacggactgccaatcccatctttaaatga
atatatgcccatggatgaataaccttaagtaaatatattttaaaatctaa
aggggggaactaagtcaggcatttgctataaatcttactatgtgtcttaa
tacctctgtgtcctaaagcaaaattgctgggaggtttctcttctgtaaaa
tgggctaacccttataagcttgttgtgagaatgactgcacgcgtagatgc
acaccacttgatagagaatccagttaaacactaaagcatttggttaaatg
atctgctagcgtcagttcctcccacatctgccaatccaattaaccgcatc
ctcttggcagagagagggagagtactgtgctgagatcaacctgaccacct
tgcctggaaggaggcccgtgtgcagtaatcacccacacacttttgctcgc
tccgctcccttcacctttgacccagtctactcactccggttcacagagtg
gtgagccaatatcacaaagaaaagggacatttcctacctttgaaaagaat
gggcagagacccagcagacttgtggtgcctgccatttcccatctgtaaat
ttctcaaaatactttccagtaaacgatctgttggggttcgcgcatcatga
tgaataacgttaaatgtcgcagtcattgtgtgccttctaaatacaatggt
ttcttcagaacatgcagttggtaaattatgaatgggagatggtttccacc
agtcttctgtttgccacagaggcattatagaaatgtatcaactcgtaaaa
gcgtctgcttgattccaacaacaagtggacagcatagtcatgagtgtcaa
gttcagtgtcacctccagaatgtggagtccttaagtcagcgggcagagag
ggcagagagtggatcttcctgagagcactttcagaaaccactctcacttt
cactgtttgaaatgtcactatcacaaagttgagctacagttcatcgtgac
gggtcatcgattccaccatcctatgtggggtggggtcatctaacccttga
acaacttcttactcccttgccaactcgaaaaaatgcttgcggggcgggga
agttcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52845620_52846766
seq2: B6Ng01-123A03.b_44_1179 (reverse)

seq1  GCTGTCCCCGCCAGGGAAAGACAGCAAGTTGTGCTGCGCCCGGGACTCGC  50
      ||||| |||||||||||||||||||||||| ||||| |||| |||||   
seq2  GCTGT-CCCGCCAGGGAAAGACAGCAAGTT-TGCTG-GCCC-GGACTGCG  46

seq1  GAGGGACCGCGGCCGCCGCCCGACCGGGTAAGTAGCGCGCCCCGGGGCCC  100
      ||||||| |||||||||| |||| ||||||||||||||||||| | ||||
seq2  GAGGGACGGCGGCCGCCG-CCGA-CGGGTAAGTAGCGCGCCCC-GAGCCC  93

seq1  CGTGCCCGGGTCCCTCCTGTCTTTCCGAGTGGCATAGTTCAGCTGAGGTC  150
      ||||||||||| |||||||||||| ||||||||| |||||||||||||||
seq2  CGTGCCCGGGTTCCTCCTGTCTTT-CGAGTGGCAAAGTTCAGCTGAGGTC  142

seq1  CTGTCGGCCTCCGGGGGGTGCTGCCTTCCTTTCCATCCTTATCCGTCCCT  200
      ||||||| |||| ||||||||||||||||||||||| | |||||||||||
seq2  CTGTCGG-CTCC-GGGGGTGCTGCCTTCCTTTCCAT-CGTATCCGTCCCT  189

seq1  TTCTCAGAGCCGGCTGCAAGAACTTCCCCGTGCCGCTTTGCATCCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAGCCGGCTGCAAGAACTTCCCCGTGCCGCTTTGCATCCAGAGA  239

seq1  TCATTGTGTGTGTTCCTGTGTGCTCCAGGGTGCGGTGCGTGCGTCTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTGTGTTCCTGTGTGCTCCAGGGTGCGGTGCGTGCGTCTAGCA  289

seq1  GTTTTGGGGGAGGATGGTGGGTTTAAGTTCATCTGGACTAGGGTAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGGGAGGATGGTGGGTTTAAGTTCATCTGGACTAGGGTAACTCA  339

seq1  CTCCAGCTGAGAAAGAGGTCCCTTTCTTCCCACTCCCCACCTTTAATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGAGAAAGAGGTCCCTTTCTTCCCACTCCCCACCTTTAATGGT  389

seq1  AACCCCCAGACCAACTCAACTTCAGCCTCTGCTCACAGCTGACACGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAGACCAACTCAACTTCAGCCTCTGCTCACAGCTGACACGATTT  439

seq1  TAAAAACCGTAGCCAGAGGGAGCTCCCCTTTGGGTAGAATCCAGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCGTAGCCAGAGGGAGCTCCCCTTTGGGTAGAATCCAGAACAGA  489

seq1  GGGCGAGCAAAGTGTAGGAGACTGGAGTTTGGAAGCAGTTTGCAGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGCAAAGTGTAGGAGACTGGAGTTTGGAAGCAGTTTGCAGATGGA  539

seq1  ACCCGACGGGGTGGGGGTGTTCTTCTGTGTTCTTTGTGGAGAGTGTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACGGGGTGGGGGTGTTCTTCTGTGTTCTTTGTGGAGAGTGTAGCC  589

seq1  AGGTGTGCAAGCCAGCCCACCTCATCGAACCCTTTTGAATAGCTGACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCAAGCCAGCCCACCTCATCGAACCCTTTTGAATAGCTGACTTG  639

seq1  ACATTAGGTATTGGAAAAGAGTGAGTGCTTGGTCTGAAATGGCCAGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGTATTGGAAAAGAGTGAGTGCTTGGTCTGAAATGGCCAGCAGG  689

seq1  TGAAAGCACTGAAGCCAAGGAGTCAAAATAGGAGGCGTGAACACATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACTGAAGCCAAGGAGTCAAAATAGGAGGCGTGAACACATTTGC  739

seq1  CCCGGAAAATTAAGACAGAAGGCGTTTTTAGTGTTATCGAGTACTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAAAATTAAGACAGAAGGCGTTTTTAGTGTTATCGAGTACTGGGGG  789

seq1  TGTGTAACTATATATCACCCGATATATACACCCGAGTGGTGAATACTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTATATATCACCCGATATATACACCCGAGTGGTGAATACTGTT  839

seq1  AGTTAAATTTACAGTAACTGGGGGTGTGTAACTATATATCCAATGTATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATTTACAGTAACTGGGGGTGTGTAACTATATATCCAATGTATAC  889

seq1  ACCTGAGTGGTGAATACTGTTAGTTAAATTTACAGTACTTCTGTAATTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTGGTGAATACTGTTAGTTAAATTTACAGTACTTCTGTAATTGT  939

seq1  ATGAAGTTCCCACTATCATGTTGCTTGGTTGGCACACTCATCAAGTGATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTCCCACTATCATGTTGCTTGGTTGGCACACTCATCAAGTGATG  989

seq1  CCGAGGAGTGGCTAGAAACTAAGTGTGAACTTGCAAGCCAAATAAACAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGAGTGGCTAGAAACTAAGTGTGAACTTGCAAGCCAAATAAACAAA  1039

seq1  CTACTGTATGGTCCATTTTATTTTAATATCCGGAATTATGTCTCCTGCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATGGTCCATTTTATTTTAATATCCGGAATTATGTCTCCTGCTA  1089

seq1  GTAAAAAATGCTACATTGCTTTTAATGTGAGTATGTGAAATGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAATGCTACATTGCTTTTAATGTGAGTATGTGAAATGAATTC  1136

seq1: chr3_52758349_52759459
seq2: B6Ng01-123A03.g_66_1173

seq1  GAATTCCACGGGAAGCTTACCTACGGACTGCCAATCCCATCTTTAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGAAGCTTACCTACGGACTGCCAATCCCATCTTTAAATGA  50

seq1  ATATATGCCCATGGATGAATAACCTTAAGTAAATATATTTTAAAATCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCATGGATGAATAACCTTAAGTAAATATATTTTAAAATCTAA  100

seq1  AGGGGGGAACTAAGTCAGGCATTTGCTATAAATCTTACTATGTGTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAACTAAGTCAGGCATTTGCTATAAATCTTACTATGTGTCTTAA  150

seq1  TACCTCTGTGTCCTAAAGCAAAATTGCTGGGAGGTTTCTCTTCTGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTGTCCTAAAGCAAAATTGCTGGGAGGTTTCTCTTCTGTAAAA  200

seq1  TGGGCTAACCCTTATAAGCTTGTTGTGAGAATGACTGCACGCGTAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAACCCTTATAAGCTTGTTGTGAGAATGACTGCACGCGTAGATGC  250

seq1  ACACCACTTGATAGAGAATCCAGTTAAACACTAAAGCATTTGGTTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTTGATAGAGAATCCAGTTAAACACTAAAGCATTTGGTTAAATG  300

seq1  ATCTGCTAGCGTCAGTTCCTCCCACATCTGCCAATCCAATTAACCGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAGCGTCAGTTCCTCCCACATCTGCCAATCCAATTAACCGCATC  350

seq1  CTCTTGGCAGAGAGAGGGAGAGTACTGTGCTGAGATCAACCTGACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCAGAGAGAGGGAGAGTACTGTGCTGAGATCAACCTGACCACCT  400

seq1  TGCCTGGAAGGAGGCCCGTGTGCAGTAATCACCCACACACTTTTGCTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAGGAGGCCCGTGTGCAGTAATCACCCACACACTTTTGCTCGC  450

seq1  TCCGCTCCCTTCACCTTTGACCCAGTCTACTCACTCCGGTTCACAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCCCTTCACCTTTGACCCAGTCTACTCACTCCGGTTCACAGAGTG  500

seq1  GTGAGCCAATATCACAAAGAAAAGGGACATTTCCTACCTTTGAAAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCAATATCACAAAGAAAAGGGACATTTCCTACCTTTGAAAAGAAT  550

seq1  GGGCAGAGACCCAGCAGACTTGTGGTGCCTGCCATTTCCCATCTGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGACCCAGCAGACTTGTGGTGCCTGCCATTTCCCATCTGTAAAT  600

seq1  TTCTCAAAATACTTTCCAGTAAACGATCTGTTGGGGTTCGCGCATCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAATACTTTCCAGTAAACGATCTGTTGGGGTTCGCGCATCATGA  650

seq1  TGAATAACGTTAAATGTCGCAGTCATTGTGTGCCTTCTAAATACAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACGTTAAATGTCGCAGTCATTGTGTGCCTTCTAAATACAATGGT  700

seq1  TTCTTCAGAACATGCAGTTGGTAAATTATGAATGGGAGATGGTTTCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAACATGCAGTTGGTAAATTATGAATGGGAGATGGTTTCCACC  750

seq1  AGTCTTCTGTTTGCCACAGAGGCATTATAGAAATGTATCAACTCGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGTTTGCCACAGAGGCATTATAGAAATGTATCAACTCGTAAAA  800

seq1  GCGTCTGCTTGATTCCAACAACAAGTGGACAGCATAGTCATGAGTGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGCTTGATTCCAACAACAAGTGGACAGCATAGTCATGAGTGTCAA  850

seq1  GTTCAGTGTCACCTCCAGAATGTGGAGTCCTTAAGTCAGCGGGCAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTCACCTCCAGAATGTGGAGTCCTTAAGTCAGCGGGCAGAGAG  900

seq1  GGCAGAGAGTGGATCTTCCTGAGAGCACTTTCAGAAACCACTCTCACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGTGGATCTTCCTGAGAGCACTTTCAGAAACCACTCTCACTTT  950

seq1  CACTGTTTGAAATGTCACTATCACAAAGTTGAAGGCTACAGGTTCATCGT  1000
      ||||||||||||||||||||||||||||||||  |||||| |||||||||
seq2  CACTGTTTGAAATGTCACTATCACAAAGTTGA--GCTACA-GTTCATCGT  997

seq1  GAACGGGTCATCCGATCCACCATCCTA-GTGGGGTGGGGTCATCTAACCC  1049
      | ||||||||||   |||||||||||| ||||||||||||||||||| ||
seq2  G-ACGGGTCATCGATTCCACCATCCTATGTGGGGTGGGGTCATCTAA-CC  1045

seq1  CTGGACCAACTCCTTACTCCC-TGCCCACTCAGAAAAAATGC-TGCGGGG  1097
      || || ||||| ||||||||| |||| |||| |||||||||| |||||||
seq2  CTTGAACAACTTCTTACTCCCTTGCCAACTC-GAAAAAATGCTTGCGGGG  1094

seq1  CGGGGAGGTTCGGA  1111
      |||||| ||||| |
seq2  CGGGGAAGTTCGTA  1108