BAC Information

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BAC

Clone NameB6Ng01-123I20
Chromosome3 (Build37)
Map Location 35,204,719 - 35,349,473
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I20.bB6Ng01-123I20.g
ACCDH926688DH926689
length1,1091,123
definitionDH926688|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I20, 5' end.DH926689|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,204,719 - 35,205,837)(35,348,333 - 35,349,473)
sequence
gaattctgcctctaaaactccaagcagaatcctgcactcagtagagacta
tggatctttacccgatgaaatggcggtaaataggtgaaaagatgacattt
gcgaaatccgtgaagtaaggaacaagtgatcaccaacctcaagcagtttt
aaacaaacaccaaacaaacaaaaagacaaaggaggaagttagcaaattgt
cgttttaccttatgtgtgccagtgctcatggagtcttcagtgtgtatgcc
agtgagcatcctaatgaagatttaagccattgaacccaccttgccagttg
gtgcttagtggaaattaagctgtggattataaggatagcttctcgcaagg
ctttgaagtctactgttttagtctgcatgatcacagaactgtctcgccca
cttccctttctcctttctttcttaatcttttgtgtggttgcagtgggggg
agctgcaaaccaacctgtgttgcggtaatggttttcttagtgaatgcttt
agttaacatatagacttttatcataatttatcccaccttgtcgtcaagtg
ttttgtttttcactttgttctgcacagttcttcagacaaaaaccttccag
gctttgttttcttgttcagatacactttcaatttatatctcttgtcttca
gaagcagctgaacacatgaaatgtaaagtttgagaagggattgtcatcca
gggtgtcctagttggggttacctttgctgtgatgaaacaccatgatcaaa
ggcaagtttatttgacttacacttccacactatagttcatcgtcaatgga
agttatgacaggagctcaagcagggtagaacctggaggcaggagctgatg
ccatgtagggatgctgccgactggcttgctcctcatggcttgctcagcct
gctttctttatagaacccaggaccaccagcccagggatggcaccacccat
aacagcagggccctcatcatcaatcactaataagatatcctctgtagact
tgcctgcagcctgatctatgaagcattcctctaggatgaaggttccttcc
tcccaatattgtagctatatagttaataaaactatcctgaacccagggat
attgaaaga
gaattctgagtgctgtaagaaaactctaagaacaaaaggcttctgaactc
aatttcttcaaaatgtggagttgttcttggggtatgttccatggccctcc
cagatgtaacagataggagtgactttactaaagaatactcattacaactg
gctattgctatttgtttctacgcctgtatggaaaagcatgtccaccatgt
gtagcttgtctaccaatggggcttattcttactgcttgtacactttaccc
atgtgaccccttgtagccctcagagtataaattgtctgatgctctgaata
aagttggctactgcctgaaactttagtgtgacttgtttattggctctatt
ctcccaggccccattgcctctatcatggtaaacaagtggtacctggaaca
gggatctgaaatcggctatgagataagagagtgaggaccctcacagaagg
cggtgagtgagaaaaatggggcagaaaccaaggaaggcttcatcctatgt
tgagcatgtgcataatttttgagaaaaagaagaacacaagtatgaaaagc
acactattaaattgcttgcaagctgtctaagattagaatccctggtctcc
agggggaactttaaatgaagatgtatggggcacagtctgaaagaatattg
aaaaggtatataagcgaggggaaagatccccattcagttttgggtcactt
gggcattggtttgaactgttattaaaacaggaagataaggaggatagtaa
tcgtgataaagagatgactaattccttgaatgaaataaattaggcgataa
accttaaaattgataaaagaggcaaaagaagttttttttccccattcagt
aaaatcaaagtaagaacagcagccagtgtagtatgccagtaataactccc
tttacttctctggagccttctttaagtaagtccctccagtcctgaaatgg
ccttgaagcatgggatgagaatttgatgaacagtctatcttataatctct
gcatccctgatggaatataggagagccagtggaaaggctaatttatacct
tagcaagcttgaacatgaccgggagaagtggaccttgtgttcccaatccc
cctcggccagccccccggacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35204719_35205837
seq2: B6Ng01-123I20.b_49_1157

seq1  GAATTCTGCCTCTAAAACTCCAAGCAGAATCCTGCACTCAGTAGAGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCTAAAACTCCAAGCAGAATCCTGCACTCAGTAGAGACTA  50

seq1  TGGATCTTTACCCGATGAAATGGCGGTAAATAGGTGAAAAGATGACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTACCCGATGAAATGGCGGTAAATAGGTGAAAAGATGACATTT  100

seq1  GCGAAATCCGTGAAGTAAGGAACAAGTGATCACCAACCTCAAGCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAATCCGTGAAGTAAGGAACAAGTGATCACCAACCTCAAGCAGTTTT  150

seq1  AAACAAACACCAAACAAACAAAAAGACAAAGGAGGAAGTTAGCAAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACCAAACAAACAAAAAGACAAAGGAGGAAGTTAGCAAATTGT  200

seq1  CGTTTTACCTTATGTGTGCCAGTGCTCATGGAGTCTTCAGTGTGTATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTACCTTATGTGTGCCAGTGCTCATGGAGTCTTCAGTGTGTATGCC  250

seq1  AGTGAGCATCCTAATGAAGATTTAAGCCATTGAACCCACCTTGCCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCATCCTAATGAAGATTTAAGCCATTGAACCCACCTTGCCAGTTG  300

seq1  GTGCTTAGTGGAAATTAAGCTGTGGATTATAAGGATAGCTTCTCGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGTGGAAATTAAGCTGTGGATTATAAGGATAGCTTCTCGCAAGG  350

seq1  CTTTGAAGTCTACTGTTTTAGTCTGCATGATCACAGAACTGTCTCGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGTCTACTGTTTTAGTCTGCATGATCACAGAACTGTCTCGCCCA  400

seq1  CTTCCCTTTCTCCTTTCTTTCTTAATCTTTTGTGTGGTTGCAGTGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTCTCCTTTCTTTCTTAATCTTTTGTGTGGTTGCAGTGGGGGG  450

seq1  AGCTGCAAACCAACCTGTGTTGCGGTAATGGTTTTCTTAGTGAATGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAACCAACCTGTGTTGCGGTAATGGTTTTCTTAGTGAATGCTTT  500

seq1  AGTTAACATATAGACTTTTATCATAATTTATCCCACCTTGTCGTCAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATATAGACTTTTATCATAATTTATCCCACCTTGTCGTCAAGTG  550

seq1  TTTTGTTTTTCACTTTGTTCTGCACAGTTCTTCAGACAAAAACCTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCACTTTGTTCTGCACAGTTCTTCAGACAAAAACCTTCCAG  600

seq1  GCTTTGTTTTCTTGTTCAGATACACTTTCAATTTATATCTCTTGTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTCTTGTTCAGATACACTTTCAATTTATATCTCTTGTCTTCA  650

seq1  GAAGCAGCTGAACACATGAAATGTAAAGTTTGAGAAGGGATTGTCATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCTGAACACATGAAATGTAAAGTTTGAGAAGGGATTGTCATCCA  700

seq1  GGGTGTCCTAGTTGGGGTTACCTTTGCTGTGATGAAACACCATGATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCTAGTTGGGGTTACCTTTGCTGTGATGAAACACCATGATCAAA  750

seq1  GGCAAGTTTATTTGACTTACACTTCCACACTATAGTTCATCGTCAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTTATTTGACTTACACTTCCACACTATAGTTCATCGTCAATGGA  800

seq1  AGTTATGACAGGAGCTCAAGCAGGGTAGAACCTGGAGGCAGGAGCTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGACAGGAGCTCAAGCAGGGTAGAACCTGGAGGCAGGAGCTGATG  850

seq1  CCATGTAGGGATGCTGCCGACTGGCTTGCTCCTCATGGCTTGCTCAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGGGATGCTGCCGACTGGCTTGCTCCTCATGGCTTGCTCAGCCT  900

seq1  GCTTTCTTTATAGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTATAGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCAT  950

seq1  AACAGGCAGGGCCCTCATCATCAATCACTAATTAAGAATATCCTCTGTAG  1000
      |||| |||||||||||||||||||||||||| |||| |||||||||||||
seq2  AACA-GCAGGGCCCTCATCATCAATCACTAA-TAAG-ATATCCTCTGTAG  997

seq1  ACTTGCCTGCAGCCTGATCTTATGAAGGCATT-CTCTCAGATG-AGGTTC  1048
      ||||||||||||||||||| |||||| ||||| ||||  |||| ||||||
seq2  ACTTGCCTGCAGCCTGATC-TATGAA-GCATTCCTCTAGGATGAAGGTTC  1045

seq1  CTTCCTCCCAAATAATGGTAGCTTATATTAAGTAACATAAAACTATCCTG  1098
      |||||||||||   || ||||| |||||  ||| | ||||||||||||||
seq2  CTTCCTCCCAA--TATTGTAGC-TATAT--AGTTA-ATAAAACTATCCTG  1089

seq1  AACACAGGGGATTATGAAAGA  1119
      ||| || |||||  |||||||
seq2  AACCCA-GGGATATTGAAAGA  1109

seq1: chr3_35348333_35349473
seq2: B6Ng01-123I20.g_66_1188 (reverse)

seq1  GAGGT-CGGGGGGCTGGGGCGGGAAGGGGGGATTGGGAA-ACAAAGTCCA  48
      ||||| |||||||||  ||| |    ||||||||||||| |||| |||||
seq2  GAGGTCCGGGGGGCT--GGCCG---AGGGGGATTGGGAACACAAGGTCCA  45

seq1  CTTCTTCCCTGTCATGTTCCAGCTTGCCTAGGTTATAAATTTAGCCTTTT  98
      |||| |||| ||||||||| |||||| ||| | |||||| ||||||||| 
seq2  CTTC-TCCCGGTCATGTTCAAGCTTG-CTAAGGTATAAA-TTAGCCTTTC  92

seq1  CACTGGCTCTCCTATATTCCCATCAGGGAATGCAGAGAATATAAGATTAG  148
      |||||||||||||||||| ||||||||| ||||||||| ||||||| |||
seq2  CACTGGCTCTCCTATATT-CCATCAGGG-ATGCAGAGATTATAAGA-TAG  139

seq1  ACTGTTCATCAAATTCCTCATCCCATGCTTCAGGGCCATTTTCAGGACTT  198
      ||||||||||||||| |||||||||||||||| ||||| |||||||||| 
seq2  ACTGTTCATCAAATT-CTCATCCCATGCTTCAAGGCCA-TTTCAGGACT-  186

seq1  GGAAGAGACTTACTTAAAGAAGGCTCCAGAGAAGTAAAGGGAGTTATTAC  248
       | || ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGAGGGACTTACTTAAAGAAGGCTCCAGAGAAGTAAAGGGAGTTATTAC  235

seq1  TGGCATACTTACACTGGCTGCTGTTCTTACTTTTGATTTTACCTGAATGG  298
      |||||||| ||||||||||||||||||||| |||||||||| ||||||||
seq2  TGGCATAC-TACACTGGCTGCTGTTCTTAC-TTTGATTTTA-CTGAATGG  282

seq1  GGAAAAAAAACTTCTTTTTGCCTCTTTTATCAATTTTAAGGTTTATCGCC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAACTTC-TTTTGCCTCTTTTATCAATTTTAAGGTTTATCGCC  331

seq1  TAATTTATTTTCATTCAAGGAATTAGTCATCTCTTTATCACGATTACTAT  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTA-TTTCATTCAAGGAATTAGTCATCTCTTTATCACGATTACTAT  380

seq1  CCTCCTTATCTTCCTGTTTTAATAACAGTTCAAACCAATGCCCAAGTGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTATCTTCCTGTTTTAATAACAGTTCAAACCAATGCCCAAGTGAC  430

seq1  CCAAAACTGAATGGGGATCTTTCCCCTCGCTTATATACCTTTTCAATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGAATGGGGATCTTTCCCCTCGCTTATATACCTTTTCAATATT  480

seq1  CTTTCAGACTGTGCCCCATACATCTTCATTTAAAGTTCCCCCTGGAGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGACTGTGCCCCATACATCTTCATTTAAAGTTCCCCCTGGAGACC  530

seq1  AGGGATTCTAATCTTAGACAGCTTGCAAGCAATTTAATAGTGTGCTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCTAATCTTAGACAGCTTGCAAGCAATTTAATAGTGTGCTTTTC  580

seq1  ATACTTGTGTTCTTCTTTTTCTCAAAAATTATGCACATGCTCAACATAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGTTCTTCTTTTTCTCAAAAATTATGCACATGCTCAACATAGG  630

seq1  ATGAAGCCTTCCTTGGTTTCTGCCCCATTTTTCTCACTCACCGCCTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCTTCCTTGGTTTCTGCCCCATTTTTCTCACTCACCGCCTTCTG  680

seq1  TGAGGGTCCTCACTCTCTTATCTCATAGCCGATTTCAGATCCCTGTTCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCCTCACTCTCTTATCTCATAGCCGATTTCAGATCCCTGTTCCA  730

seq1  GGTACCACTTGTTTACCATGATAGAGGCAATGGGGCCTGGGAGAATAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACTTGTTTACCATGATAGAGGCAATGGGGCCTGGGAGAATAGAG  780

seq1  CCAATAAACAAGTCACACTAAAGTTTCAGGCAGTAGCCAACTTTATTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAACAAGTCACACTAAAGTTTCAGGCAGTAGCCAACTTTATTCAG  830

seq1  AGCATCAGACAATTTATACTCTGAGGGCTACAAGGGGTCACATGGGTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGACAATTTATACTCTGAGGGCTACAAGGGGTCACATGGGTAAA  880

seq1  GTGTACAAGCAGTAAGAATAAGCCCCATTGGTAGACAAGCTACACATGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAAGCAGTAAGAATAAGCCCCATTGGTAGACAAGCTACACATGGT  930

seq1  GGACATGCTTTTCCATACAGGCGTAGAAACAAATAGCAATAGCCAGTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCTTTTCCATACAGGCGTAGAAACAAATAGCAATAGCCAGTTGT  980

seq1  AATGAGTATTCTTTAGTAAAGTCACTCCTATCTGTTACATCTGGGAGGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTATTCTTTAGTAAAGTCACTCCTATCTGTTACATCTGGGAGGGC  1030

seq1  CATGGAACATACCCCAAGAACAACTCCACATTTTGAAGAAATTGAGTTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACATACCCCAAGAACAACTCCACATTTTGAAGAAATTGAGTTCA  1080

seq1  GAAGCCTTTTGTTCTTAGAGTTTTCTTACAGCACTCAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTTTGTTCTTAGAGTTTTCTTACAGCACTCAGAATTC  1123