BAC Information

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BAC

Clone NameB6Ng01-124G08
Chromosome3 (Build37)
Map Location 44,619,809 - 44,775,032
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124G08.bB6Ng01-124G08.g
ACCDH927314DH927315
length1,08190
definitionDH927314|Mus musculus domesticus DNA, BAC clone: B6Ng01-124G08, 5' end.DH927315|Mus musculus domesticus DNA, BAC clone: B6Ng01-124G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,773,949 - 44,775,032)(44,619,809 - 44,619,898)
sequence
gaattcttcaagatacaccaatataaatgcatttgatgctgtttgttttt
gccatgttggaatatgtcttgcataaataacatagtcttcttaaattggc
atgattcccacagtaattcactggagaagtagaaagatacagactaagtt
tttcagacacccaggtcataacttacatatttcatctcctcacatagact
attgttcaaaactgtcaagcatttttaacattgtccctgtagtttaagtt
gtatttcagctatcatggttcttatgagccatcatggtgattgactcagc
agcaacatttaactttgttttatcatgattaccaatgaaaaagaaagaac
aataacaacaacagcaatctcaaaaaatgttaaacaaacaaacaaaaaaa
acccttatatcattaacatgaaggcaaaatggcatgcattgtggtaaaat
gcaagtaatttcaaagcaaatgaacaatgcaacttaagctttagaagtga
ttatgtgacttttctttagaataattcactggcagtgtttctcagggtaa
acatgagaatgttcagaagtgatttagtctattttcatcttagaaatgac
ctgaagtcaaatgtagtaatataggcctcttatcttggcattggggtggc
taggactggaaattacaagctggaagctagcctgggatataggctaaaat
taaaacattagtatttgtaaattgtaaaatgtatattttatagctttata
gtttaaattgcaccctaggtcctaatattataattaccagacacaatagt
aaacagactaacccttcatacatcattctaaggattttggccagcaatac
ctagaacaaggtgttgcagttaggctgtacttactgatattacaggagtg
attcacatgaaaaaaatcacatgaaaagaaatatttatgtgaattcaaac
acatggtcaaaatgcatattatctcctagtcatctgactgactctctaaa
actaggtcatgtgtttactgactggtatgaatcaaatgataagaaaagtg
tggggtgttccatactgggaaggagaatatt
ttactttgttgttgtttttggtggtggtggtggtttgttttttgtttttt
gtttttttgtttttttttttttgtgtgtgtgtgtgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44773949_44775032
seq2: B6Ng01-124G08.b_45_1125 (reverse)

seq1  AATATTCCTCTCTCCAGTATGGAACA-CACACACTATTCTTATCATTTTG  49
      |||||||  ||  ||||||||||||| | |||||| ||||||||||||  
seq2  AATATTCTCCTTCCCAGTATGGAACACCCCACACTTTTCTTATCATTT--  48

seq1  AATTCATAACCAGTCAGTAAACACATGACCTAGTTTTAGAGAGTCAGTCA  99
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAT-ACCAGTCAGTAAACACATGACCTAGTTTTAGAGAGTCAGTCA  97

seq1  GATGAACTAGGAGATAATATGCATTTTGACCATGTGTTTGAATTCACATA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATG-ACTAGGAGATAATATGCATTTTGACCATGTGTTTGAATTCACATA  146

seq1  AATATTTCTTTTCATGTGATTTTTTTCATGTGAATCACTCCTGTAATATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTTTCATGTGATTTTTTTCATGTGAATCACTCCTGTAATATC  196

seq1  AGTAAGTACAGCCTAACTGCAACACCTTGTTCTAGGTATTGCTGGCCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTACAGCCTAACTGCAACACCTTGTTCTAGGTATTGCTGGCCAAA  246

seq1  ATCCTTAGAATGATGTATGAAGGGTTAGTCTGTTTACTATTGTGTCTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGAATGATGTATGAAGGGTTAGTCTGTTTACTATTGTGTCTGGT  296

seq1  AATTATAATATTAGGACCTAGGGTGCAATTTAAACTATAAAGCTATAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATATTAGGACCTAGGGTGCAATTTAAACTATAAAGCTATAAAA  346

seq1  TATACATTTTACAATTTACAAATACTAATGTTTTAATTTTAGCCTATATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTACAATTTACAAATACTAATGTTTTAATTTTAGCCTATATC  396

seq1  CCAGGCTAGCTTCCAGCTTGTAATTTCCAGTCCTAGCCACCCCAATGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGCTTCCAGCTTGTAATTTCCAGTCCTAGCCACCCCAATGCCA  446

seq1  AGATAAGAGGCCTATATTACTACATTTGACTTCAGGTCATTTCTAAGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAGGCCTATATTACTACATTTGACTTCAGGTCATTTCTAAGATG  496

seq1  AAAATAGACTAAATCACTTCTGAACATTCTCATGTTTACCCTGAGAAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGACTAAATCACTTCTGAACATTCTCATGTTTACCCTGAGAAACA  546

seq1  CTGCCAGTGAATTATTCTAAAGAAAAGTCACATAATCACTTCTAAAGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGAATTATTCTAAAGAAAAGTCACATAATCACTTCTAAAGCTT  596

seq1  AAGTTGCATTGTTCATTTGCTTTGAAATTACTTGCATTTTACCACAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCATTGTTCATTTGCTTTGAAATTACTTGCATTTTACCACAATGC  646

seq1  ATGCCATTTTGCCTTCATGTTAATGATATAAGGGTTTTTTTTGTTTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTTGCCTTCATGTTAATGATATAAGGGTTTTTTTTGTTTGTTT  696

seq1  GTTTAACATTTTTTGAGATTGCTGTTGTTGTTATTGTTCTTTCTTTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATTTTTTGAGATTGCTGTTGTTGTTATTGTTCTTTCTTTTTCA  746

seq1  TTGGTAATCATGATAAAACAAAGTTAAATGTTGCTGCTGAGTCAATCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATCATGATAAAACAAAGTTAAATGTTGCTGCTGAGTCAATCACC  796

seq1  ATGATGGCTCATAAGAACCATGATAGCTGAAATACAACTTAAACTACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTCATAAGAACCATGATAGCTGAAATACAACTTAAACTACAGG  846

seq1  GACAATGTTAAAAATGCTTGACAGTTTTGAACAATAGTCTATGTGAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTAAAAATGCTTGACAGTTTTGAACAATAGTCTATGTGAGGAG  896

seq1  ATGAAATATGTAAGTTATGACCTGGGTGTCTGAAAAACTTAGTCTGTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATGTAAGTTATGACCTGGGTGTCTGAAAAACTTAGTCTGTATC  946

seq1  TTTCTACTTCTCCAGTGAATTACTGTGGGAATCATGCCAATTTAAGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTTCTCCAGTGAATTACTGTGGGAATCATGCCAATTTAAGAAGA  996

seq1  CTATGTTATTTATGCAAGACATATTCCAACATGGCAAAAACAAACAGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTATTTATGCAAGACATATTCCAACATGGCAAAAACAAACAGCAT  1046

seq1  CAAATGCATTTATATTGGTGTATCTTGAAGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  CAAATGCATTTATATTGGTGTATCTTGAAGAATTC  1081

seq1: chr3_44619809_44619898
seq2: B6Ng01-124G08.g_75_164

seq1  TTACTTTGTTGTTGTTTTTGGTGGTGGTGGTGGTTTGTTTTTTGTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGTTGTTGTTTTTGGTGGTGGTGGTGGTTTGTTTTTTGTTTTTT  50

seq1  GTTTTTTTGTTTTTTTTTTTTTGTGTGTGTGTGTGTATGT  90
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGTTTTTTTTTTTTTGTGTGTGTGTGTGTATGT  90