BAC Information

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BAC

Clone NameB6Ng01-125K08
Chromosome3 (Build37)
Map Location 145,555,627 - 145,688,050
singlet/doubletdoublet
Overlap geneBcl10, 2410004B18Rik, Syde2
Upstream geneEG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331
Downstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K08.bB6Ng01-125K08.g
ACCDH928223DH928224
length1,1471,121
definitionDH928223|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K08, 5' end.DH928224|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,555,627 - 145,556,801)(145,686,907 - 145,688,050)
sequence
gaattcaagtgaaacttcaaattacacaatgctcagctggcacaggtcgc
tcacagagagccatgcatgccacagcaaagaaggagagcattcctttttt
ttttttttttcttaaaagctgaaacagagcagggacatggtgctttacaa
tgcacagtgacccagccaggcatgtcatcaaagttctggtcacttctacc
tttgctgtacagtctgcagtttgtcattcagtatttaaagttcaggagac
aaagactaagtcagatctatctctcctttgtgatcagtgtttctcataat
gaagacaagagaggctggtctccattgcattccccccagtggatagaagt
gagacaatcagggcatccttcatcactcttctcatatttggcaatctctc
tgaagacatctccatctcttccttgcttctctaactttagactcatagca
catgcaaatatctaactctgtgcaccctgcgaatgaaccatatcctgatc
actgtcatatttcacaacatatcatgagtgaataattatgttttttccag
ggtaaatgaatgtgagccagttgcctaaattaataaagaaaacttgttct
cagcaattatggttgcctttgggggttaaatttgaccatatactagtaaa
aacaatttctccttgagagaggtgaccatctcaaaatccaccacaggaaa
aacagcccactgtatatgtaccagcatgcaactgtcactgacgtcctttc
tctcatcctgttacgtgcagtcagttacgagtgagtagattttccatggc
aacggtttcttctaccagaggtggttttccagttcccgtttcctttgcgc
tcctctttccttgttgtcctgagaaattgactagagttgctgcctcttcc
ccatcttactctgctcttcagaccccctgtgtgatttagagatgtgaaca
cgcaaaatacacgcagcattgcccttcgtgttctcatcacatacgttacc
tctaagggaaaatcatgccccagttccctctcgtcgtgtgtctcccaaga
tggagaccacaaaatgctctgattacacaatgggagagtacattaactaa
gtctataagctgttagaaggatcagtcagtatgagtggtttatgaag
gaattctttggatcaagctcaggtccttaggcttggcagcaagcaccctt
gcctgctgagccacctccagcctgtgacaaacaaaaatgtccctctccag
atgtttgaacacttcatccccagttgatggcgctgtttgggaaggcttag
gaggtgtggtcttactggagaaagtatgtcactgtgggcgggctttaagg
tttaaaggccatgcaccggtctcagtttgctctctgctcctgcagagagg
gatcaagatgcaaccttgcagttccaactgtcatgcctgccacgttcttg
tcatgatggatcttatccctctggaactgtaagaccaaatacacccttct
atgagccatcttggtcctggcgttttatcgcagcagtaaaaggagtaaca
aatgcttggagtgacatttcctcagcaacaggaatggcacaaaaggtact
acctaagtaacaggtgggtctctacgcctgcccaggcggaagggagaatg
gagaggtcctgaaacaagggaggtcccagagtggacaaggagcggtaccc
aggagatgatgtgttctatctttaccgatcactttagtctccacggatta
cagggacttcggacacagagggaccaggggcagcacagatgggatgggag
aaagcaacacagttctcagtctgggctctaccacacccagatctttgatg
ggcgagtatagagggatggtagaaaagattaatgtgggagcagcagggta
agacaaagaacagtgaagtgctgtgggcatttgacaggtctgcctgctca
gcatccggtcttccctcgaagccagaaaattcactaccataggctttagg
ctgcagtgtttcttgacctgtgggtcccaagctcgttgggagttgcatat
cctgaatatccaaatatgattatgagtagcaatgaaataatttttggttg
gggggtcaccacagatgagaactgtattaaatgttgagtgtcagatggta
gacttcatctagggaagatattggctatccctactctgagacttgcattc
actgggaccttggttggaatccatttcagaatgatagaggcagctgacct
gtggttccacgcctttatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145555627_145556801
seq2: B6Ng01-125K08.b_50_1196

seq1  GAATTCAAGTGAAACTTCAAATTACACAATGCTCAGCTGGCACAGGTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGAAACTTCAAATTACACAATGCTCAGCTGGCACAGGTCGC  50

seq1  TCACAGAGAGCCATGCATGCCACAGCAAAGAAGGAGAGCATTCCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAGCCATGCATGCCACAGCAAAGAAGGAGAGCATTCCTTTTTT  100

seq1  TTTTTTTTTTCTTAAAAGCTGAAACAGAGCAGGGACATGGTGCTTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTAAAAGCTGAAACAGAGCAGGGACATGGTGCTTTACAA  150

seq1  TGCACAGTGACCCAGCCAGGCATGTCATCAAAGTTCTGGTCACTTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGACCCAGCCAGGCATGTCATCAAAGTTCTGGTCACTTCTACC  200

seq1  TTTGCTGTACAGTCTGCAGTTTGTCATTCAGTATTTAAAGTTCAGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTACAGTCTGCAGTTTGTCATTCAGTATTTAAAGTTCAGGAGAC  250

seq1  AAAGACTAAGTCAGATCTATCTCTCCTTTGTGATCAGTGTTTCTCATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAAGTCAGATCTATCTCTCCTTTGTGATCAGTGTTTCTCATAAT  300

seq1  GAAGACAAGAGAGGCTGGTCTCCATTGCATTCCCCCCAGTGGATAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAGAGAGGCTGGTCTCCATTGCATTCCCCCCAGTGGATAGAAGT  350

seq1  GAGACAATCAGGGCATCCTTCATCACTCTTCTCATATTTGGCAATCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCAGGGCATCCTTCATCACTCTTCTCATATTTGGCAATCTCTC  400

seq1  TGAAGACATCTCCATCTCTTCCTTGCTTCTCTAACTTTAGACTCATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCTCCATCTCTTCCTTGCTTCTCTAACTTTAGACTCATAGCA  450

seq1  CATGCAAATATCTAACTCTGTGCACCCTGCGAATGAACCATATCCTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATATCTAACTCTGTGCACCCTGCGAATGAACCATATCCTGATC  500

seq1  ACTGTCATATTTCACAACATATCATGAGTGAATAATTATGTTTTTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATATTTCACAACATATCATGAGTGAATAATTATGTTTTTTCCAG  550

seq1  GGTAAATGAATGTGAGCCAGTTGCCTAAATTAATAAAGAAAACTTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGAATGTGAGCCAGTTGCCTAAATTAATAAAGAAAACTTGTTCT  600

seq1  CAGCAATTATGGTTGCCTTTGGGGGTTAAATTTGACCATATACTAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTATGGTTGCCTTTGGGGGTTAAATTTGACCATATACTAGTAAA  650

seq1  AACAATTTCTCCTTGAGAGAGGTGACCATCTCAAAATCCACCACAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTCTCCTTGAGAGAGGTGACCATCTCAAAATCCACCACAGGAAA  700

seq1  AACAGCCCACTGTATATGTACCAGCATGCAACTGTCACTGACGTCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCACTGTATATGTACCAGCATGCAACTGTCACTGACGTCCTTTC  750

seq1  TCTCATCCTGTTACGTGCAGTCAGTTACGAGTGAGTAGATTTTCCATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCTGTTACGTGCAGTCAGTTACGAGTGAGTAGATTTTCCATGGC  800

seq1  AACGGTTTCTTCTACCAGAGGTGGTTTTCCAGTTCCCGTTTCCTTTGCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTTTCTTCTACCAGAGGTGGTTTTCCAGTTCCCGTTTCCTTTGCGC  850

seq1  TCCTCTTTCCTTGTTTGTCCTGAGAAATTGACTAGAGTTGCTGCCTCTTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTTG-TTGTCCTGAGAAATTGACTAGAGTTGCTGCCTCTTC  899

seq1  CCCATCTTACTCTGCTCTTCAGACCCCCTGTGTGATTCAGAGATGTGAAC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCATCTTACTCTGCTCTTCAGACCCCCTGTGTGATTTAGAGATGTGAAC  949

seq1  ACGCAAAATACACGCAGCATTGCCCCTTCGATGTTCTCATCACATAACGT  1000
      |||||||||||||||||||||| ||||||| |||||||||||||| ||||
seq2  ACGCAAAATACACGCAGCATTG-CCCTTCG-TGTTCTCATCACAT-ACGT  996

seq1  TACCTCTAAAAGGGAAAATCATTGCCCCAGTTCCCCTCTCGTCCGTTGTG  1050
      |||||||  |||||||||||| |||||||||| ||||||||||   ||||
seq2  TACCTCT--AAGGGAAAATCA-TGCCCCAGTT-CCCTCTCGTC--GTGTG  1040

seq1  TCTCACAAAGATGGGAAGACCAACAAAAATGCTTCTTGATATTACAACAA  1100
      |||| | |||||||  ||||||   ||||||| |||    ||||| ||||
seq2  TCTC-CCAAGATGG--AGACCA--CAAAATGC-TCT---GATTAC-ACAA  1080

seq1  TGTGAGGAGTTACATTTAACTAAGTCTAT-AGCTTGGGTAAGAAGGATCA  1149
      || || ||| |||| |||||||||||||| ||||   || ||||||||||
seq2  TGGGA-GAG-TACA-TTAACTAAGTCTATAAGCT---GTTAGAAGGATCA  1124

seq1  GGTCAGTATGAGTTGGTTTAGTGAAG  1175
       ||||||||||| ||||||| |||||
seq2  -GTCAGTATGAG-TGGTTTA-TGAAG  1147

seq1: chr3_145686907_145688050
seq2: B6Ng01-125K08.g_70_1190 (reverse)

seq1  GGGATTAAAGGCGT-GAGCCACTAGGTCCGGCTGCATC-ATCATTTCTGA  48
      |||| ||||||||| || |||| |||| | ||||| || |||| ||||||
seq2  GGGA-TAAAGGCGTGGAACCAC-AGGT-CAGCTGCCTCTATCA-TTCTGA  46

seq1  TATGGATTTCCCAACAAAGGTACCAGTTGTATTGCAAGTCTCCAGGAGTT  98
       |||||||  ||||| ||||| |||||   | ||||||||||   |||| 
seq2  AATGGATT--CCAACCAAGGTCCCAGT--GAATGCAAGTCTC--AGAGTA  90

seq1  AGGAATTAGCC-ATATCTTTCCCCTAGATGAAGGTCTTACCCTTCTTGAC  147
       |||  ||||| |||||||  ||||||||||| ||| |||| |   ||||
seq2  GGGA--TAGCCAATATCTT--CCCTAGATGAA-GTC-TACCAT--CTGAC  132

seq1  ACTTCAACACTTTAATACAGTTCCTCATCTTGTGGTGACCCCCCCAACCA  197
      || |||||| |||||||||||| |||||| |||||||| |||||||||||
seq2  AC-TCAACA-TTTAATACAGTT-CTCATC-TGTGGTGA-CCCCCCAACCA  177

seq1  TAAAATTATTTCATTGCTACTTCATAATCATATTTTGGATATTCAGGATA  247
       ||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  -AAAATTATTTCATTGCTAC-TCATAATCATA-TTTGGATATTCAGGATA  224

seq1  TGCAACTCCCAACGAGCTTGGGACCCACAGGTCAAGAAACACTGCAGCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCCCAACGAGCTTGGGACCCACAGGTCAAGAAACACTGCAGCCT  274

seq1  AAAGCCTATGGTAGTGAATTTTCTGGCTTCGAGGGAAGACCGGATGCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATGGTAGTGAATTTTCTGGCTTCGAGGGAAGACCGGATGCTGA  324

seq1  GCAGGCAGACCTGTCAAATGCCCACAGCACTTCACTGTTCTTTGTCTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGACCTGTCAAATGCCCACAGCACTTCACTGTTCTTTGTCTTAC  374

seq1  CCTGCTGCTCCCACATTAATCTTTTCTACCATCCCTCTATACTCGCCCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTCCCACATTAATCTTTTCTACCATCCCTCTATACTCGCCCAT  424

seq1  CAAAGATCTGGGTGTGGTAGAGCCCAGACTGAGAACTGTGTTGCTTTCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCTGGGTGTGGTAGAGCCCAGACTGAGAACTGTGTTGCTTTCTC  474

seq1  CCATCCCATCTGTGCTGCCCCTGGTCCCTCTGTGTCCGAAGTCCCTGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCATCTGTGCTGCCCCTGGTCCCTCTGTGTCCGAAGTCCCTGTAA  524

seq1  TCCGTGGAGACTAAAGTGATCGGTAAAGATAGAACACATCATCTCCTGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGAGACTAAAGTGATCGGTAAAGATAGAACACATCATCTCCTGGG  574

seq1  TACCGCTCCTTGTCCACTCTGGGACCTCCCTTGTTTCAGGACCTCTCCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCTCCTTGTCCACTCTGGGACCTCCCTTGTTTCAGGACCTCTCCAT  624

seq1  TCTCCCTTCCGCCTGGGCAGGCGTAGAGACCCACCTGTTACTTAGGTAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCCGCCTGGGCAGGCGTAGAGACCCACCTGTTACTTAGGTAGT  674

seq1  ACCTTTTGTGCCATTCCTGTTGCTGAGGAAATGTCACTCCAAGCATTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGTGCCATTCCTGTTGCTGAGGAAATGTCACTCCAAGCATTTGT  724

seq1  TACTCCTTTTACTGCTGCGATAAAACGCCAGGACCAAGATGGCTCATAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTTTACTGCTGCGATAAAACGCCAGGACCAAGATGGCTCATAGA  774

seq1  AGGGTGTATTTGGTCTTACAGTTCCAGAGGGATAAGATCCATCATGACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTATTTGGTCTTACAGTTCCAGAGGGATAAGATCCATCATGACAA  824

seq1  GAACGTGGCAGGCATGACAGTTGGAACTGCAAGGTTGCATCTTGATCCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGGCAGGCATGACAGTTGGAACTGCAAGGTTGCATCTTGATCCCT  874

seq1  CTCTGCAGGAGCAGAGAGCAAACTGAGACCGGTGCATGGCCTTTAAACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGGAGCAGAGAGCAAACTGAGACCGGTGCATGGCCTTTAAACCT  924

seq1  TAAAGCCCGCCCACAGTGACATACTTTCTCCAGTAAGACCACACCTCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCCGCCCACAGTGACATACTTTCTCCAGTAAGACCACACCTCCTA  974

seq1  AGCCTTCCCAAACAGCGCCATCAACTGGGGATGAAGTGTTCAAACATCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCAAACAGCGCCATCAACTGGGGATGAAGTGTTCAAACATCTG  1024

seq1  GAGAGGGACATTTTTGTTTGTCACAGGCTGGAGGTGGCTCAGCAGGCAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGACATTTTTGTTTGTCACAGGCTGGAGGTGGCTCAGCAGGCAAG  1074

seq1  GGTGCTTGCTGCCAAGCCTAAGGACCTGAGCTTGATCCAAAGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGCTGCCAAGCCTAAGGACCTGAGCTTGATCCAAAGAATTC  1121