BAC Information

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BAC

Clone NameB6Ng01-126B15
Chromosome3 (Build37)15 (Build37)
Map Location 41,059,187 - 41,059,73727,251,689 - 27,252,774
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126B15.bB6Ng01-126B15.g
ACCDH928559DH928560
length9881,055
definitionDH928559|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B15, 5' end.DH928560|Mus musculus domesticus DNA, BAC clone: B6Ng01-126B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(27,251,689 - 27,252,774)
sequence
gaattctttgtttagctctgagccctatttttaaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctcttggtgacct
ttttgtcttattgatggtgtcttttgcctggcagaagctttgcaatttta
tgaggtcccatttgttgattcccgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccttatcttccaggcttttccctat
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcac
attcttctacatgataacagccagttgtgccagcaccatttgttgaaaat
actgtcttttttccactggatggtttttgctcccttgtcaaaaataaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctatcgctataccagtaccatgcaggttttttttttttttt
taatcacaattgctctgtagtacagctttaggtcaggcatggtgattcca
tcagaggttcttttatgattgagaagagtttttgctatcctaggtttttt
gttattccagatgaatttgcagattgccatttctagttcgttgaagaact
gagttggaattttgatggggattgcattgaatctgtagattgcttttggc
aagatagctatttttactatattgatcctgccaatctatgagcatgggag
atctttccatcttctgagatcttctttaatttctttctcagagacttgaa
gttcttatcatatagatctttcacttcctagtagagtcactccagatatt
ttatattatttgtgactatgagaatgtgtgtttcccta
gaattccaccctcccctccagccctcatcaaatcctttttgattattatg
tggagagcctagccctccttttaccagaatatcctaccccacctcgtgat
agggcaggctagcctaaccacttcccgcgacttggacacttttaagctgt
gtcttcctcagaaaaccagatgctctgagcttagtgccaagacagctttc
cacctagaggcacagaaaaccaggatagtgtttgagcatcattgctaagt
gataatgtttctctgttctcagtgaataaggacaggtttgccaaagcagt
atttttcttttaaagggaagggaagagaagagagccttaaggaacacagt
ctcttattgttgaaaaattactttgagttcttcatctctcctccctgcct
gcccacatcactgcagcaactacaagaatccaacagagccaaaacacact
ggccgagtggaaccacagtccttcctgatgtgccccacgctcagcctctg
ggtgacggaagggagttagtcatgcacaaacaagagcatccctgagctag
cttcatttgcttggaatccaagaatcaccacccacacagtggcaagccta
gagtgctggtgactcttctctttcctttcttcatttaatcagtcaacacg
gagacaggccctccaggaagaggctcgagtggaggagtgtccacggtggt
ccagaatgccaaatcaactcagaaaaataatacgggaactcaggatgggt
aggaggtatcaaagataaacttctaatccaaaggacaggaggcgggctac
tcgaaaagcatcctgaaagagaaacgactccttttcttcctggaatcaat
ggatacttgaatcttatggatctagagtcaaatatttcaaagtaggcatg
ttgcacatacatgcctgaatcttcagcacacaggagctgggtgaatggtt
cacagtcaagctagccaggtacttagttaaatactagtaaatactacttt
caaaacatataaccagagctaagagtggcttgatcgaaagtgcatctata
agtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-126B15.b_50_601 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| ||| |||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||| || || ||||||||||| ||||||||||||||||||||||||
seq2  GTCACTTTATTTTTGACAAGGGAGCAAAAACCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTATTTTCAACAAATGGTGCTGGCACAACTGGCTGTTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGTGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||| | ||||||||||| ||||||| ||  ||||||| |||||||||| |
seq2  AAAATAGGGAAAAGCCTGGAAGATAAGGGTACAGGGGGAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      ||||||||||||||||||||||||||||| | ||||  ||||||||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCGGGAATCAACAAATGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||| |||||||||||||| |||||||||||||| |||||||||||
seq2  TCATAAAATTGCAAAGCTTCTGCCAGGCAAAAGACACCATCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCACCAAGAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GAAAATCAAATAACCCCATTTAAAAATAGGGCTCAGAGCTAAACAAAGAA  550

seq1  TT  551
      ||
seq2  TT  552

seq1: chr15_27251689_27252774
seq2: B6Ng01-126B15.g_69_1123

seq1  GAATTCCACCCTCCCCTCCAGCCCTCATCAAATCCTTTTTGATTATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCTCCCCTCCAGCCCTCATCAAATCCTTTTTGATTATTATG  50

seq1  TGGAGAGCCTAGCCCTCCTTTTACCAGAATATCCTACCCCACCTCGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCCTAGCCCTCCTTTTACCAGAATATCCTACCCCACCTCGTGAT  100

seq1  AGGGCAGGCTAGCCTAACCACTTCCCGCGACTTGGACACTTTTAAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCTAGCCTAACCACTTCCCGCGACTTGGACACTTTTAAGCTGT  150

seq1  GTCTTCCTCAGAAAACCAGATGCTCTGAGCTTAGTGCCAAGACAGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCAGAAAACCAGATGCTCTGAGCTTAGTGCCAAGACAGCTTTC  200

seq1  CACCTAGAGGCACAGAAAACCAGGATAGTGTTTGAGCATCATTGCTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAGGCACAGAAAACCAGGATAGTGTTTGAGCATCATTGCTAAGT  250

seq1  GATAATGTTTCTCTGTTCTCAGTGAATAAGGACAGGTTTGCCAAAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTTTCTCTGTTCTCAGTGAATAAGGACAGGTTTGCCAAAGCAGT  300

seq1  ATTTTTCTTTTAAAGGGAAGGGAAGAGAAGAGAGCCTTAAGGAACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTAAAGGGAAGGGAAGAGAAGAGAGCCTTAAGGAACACAGT  350

seq1  CTCTTATTGTTGAAAAATTACTTTGAGTTCTTCATCTCTCCTCCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTGTTGAAAAATTACTTTGAGTTCTTCATCTCTCCTCCCTGCCT  400

seq1  GCCCACATCACTGCAGCAACTACAAGAATCCAACAGAGCCAAAACACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATCACTGCAGCAACTACAAGAATCCAACAGAGCCAAAACACACT  450

seq1  GGCCGAGTGGAACCACAGTCCTTCCTGATGTGCCCCACGCTCAGCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGTGGAACCACAGTCCTTCCTGATGTGCCCCACGCTCAGCCTCTG  500

seq1  GGTGACGGAAGGGAGTTAGTCATGCACAAACAAGAGCATCCCTGAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACGGAAGGGAGTTAGTCATGCACAAACAAGAGCATCCCTGAGCTAG  550

seq1  CTTCATTTGCTTGGAATCCAAGAATCACCACCCACACAGTGGCAAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCTTGGAATCCAAGAATCACCACCCACACAGTGGCAAGCCTA  600

seq1  GAGTGCTGGTGACTCTTCTCTTTCCTTTCTTCATTTAATCAGTCAACACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGTGACTCTTCTCTTTCCTTTCTTCATTTAATCAGTCAACACG  650

seq1  GAGACAGGCCCTCCAGGAAGAGGCTCGAGTGGAGGAGTGTCCACGGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCCCTCCAGGAAGAGGCTCGAGTGGAGGAGTGTCCACGGTGGT  700

seq1  CCAGAATGCCAAATCAACTCAGAAAAATAATACGGGAACTCAGGGATGGG  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGAATGCCAAATCAACTCAGAAAAATAATACGGGAACTCA-GGATGGG  749

seq1  TAGGAGGTATCAAAGATAAACTTCTAATCCAAAGGACAGGAGGCGGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTATCAAAGATAAACTTCTAATCCAAAGGACAGGAGGCGGGCTA  799

seq1  CTCGAAAAGGCATCCTGGAAAGAGAAACGGACTCCTTTTCTTTCCTGGAA  850
      |||||||| ||||||| ||||||||||| ||||||||||| |||||||||
seq2  CTCGAAAA-GCATCCT-GAAAGAGAAAC-GACTCCTTTTC-TTCCTGGAA  845

seq1  TCAATGGGATACTTGAAATCTATGGATCTAGAGGTCAAAATATTTTCAAA  900
      ||||| |||||||||||   |||||||||||| ||| ||||| |||||||
seq2  TCAAT-GGATACTTGAATCTTATGGATCTAGA-GTC-AAATA-TTTCAAA  891

seq1  GGTAGGCATGGTGCCACATACATGCCTGAAATCTCAGCACACAGGAGGCT  950
       ||||||||| || ||||||||||||||||   ||||||||||||| |||
seq2  -GTAGGCATGTTG-CACATACATGCCTGAATCTTCAGCACACAGGA-GCT  938

seq1  GGGGTGAATGGTTCACAGGTTCAAAGCTAGCCAGGGTACTTAGTAAAATA  1000
       |||||||||||||||||  || |||||||||| |||||||||| |||||
seq2  -GGGTGAATGGTTCACAG--TC-AAGCTAGCCA-GGTACTTAGTTAAATA  983

seq1  CTTAGTAAAATACTACATTCAAAAAACATATAAACACAGGAGCTAAGGAG  1050
      | |||| ||||||||| |||  ||||||||||| ||   ||||||||   
seq2  C-TAGT-AAATACTACTTTC--AAAACATATAACCA---GAGCTAAG--A  1024

seq1  GTGGCTGAGTCAGAAAAGTGCATACTATATAAGTAA  1086
      ||||||   ||   ||||||||   | |||||||||
seq2  GTGGCTTGATC--GAAAGTGCA---TCTATAAGTAA  1055