BAC Information

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BAC

Clone NameB6Ng01-127E09
Chromosome3 (Build37)
Map Location 144,289,987 - 144,426,885
singlet/doubletdoublet
Overlap geneSh3glb1, LOC668890, Clca1
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127E09.bB6Ng01-127E09.g
ACCDH929432DH929433
length1,1661,022
definitionDH929432|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E09, 5' end.DH929433|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,289,987 - 144,291,162)(144,425,824 - 144,426,885)
sequence
gaattcctgtctgacttctttcgataatgaacagcaatgtggaagtgtaa
gctgaatgacgttctccaagttgccgtttgactgtggtattttattgcag
caatagaaatcctaataaaggcaaggggttcatttcttcttttaagcttt
gaaaggcttttgaaacaaggtgagcctcccgggtgccttcacaggagaac
accattgcgtgtgggtggctcatgctcgctagaatctgcttccccaattc
ttagaacccttcacatcacaaggatcgcctggcgtgggtaggtctctgtt
ttccatcaataggctcccctgttagctctcaaacctgggacaaatggctg
cggtgtctacttaaaccatcaaggcagacctgtccaccaggttcccccag
catcccctggttcctacctgttacagaatatggctggcacaccccaacgc
taccctaaactactcgagctcaggggctggtctgccctttccccagtggc
tcttccctgtataatcagccattctgatgacctagcccctttgactttac
cctttacccttctggcctctccctcttccttcttctccccttcctttctc
ctctcccttctccctctccttcttcccctctcccctctctcttctattcc
cctctcccctctattcctctctgacccctcccctctctcctctcctcccc
ttctctcttccctctgttccccagtcccctctcccctggtggctaggcac
agggtcatgtcttctctggcctcccccaaatgtgtctgcctctggccatg
ctcttccttttatctataataaaccttctcctccaccatacctaggagca
gtctttgtccctttctttatcttttctttttttattcatccccttttttc
ctgaaaggagttgggtgctatcacaagttgactgcccttcctcacacact
tccatccaggcggaccgccaggaagaggcaaagctttggaaacatttgcg
gttacaatttgcttggctgggttctcttgcccttcttctttcaagccttg
ttgtggttacactggctttcttgcagcatggatttctggcactttagttg
cagcacacagcaggaaatatgttgacgaaggagagagagcttaatttatc
ccaacaccgttgctat
gaattcccagaagaaagagacaaagagttagactttgaacatgagagaga
gaataggtttcagaaaagcagttctcccctgttcaggaccttttaacaaa
agagaaggaaaatggaaataagctatttcagagctctcctagagaaagga
ggaaatcgggagctgtcctgcttcctctctggctcctatggagatagtct
tagttttgattagaatatctgggtctctttgagacatcaagttatagtcc
ctctttgtctgttgtctgaccttcgtacaccaatttgtccatatgtctgt
caatttatgttttgttttgttttgttgtttgaatgattgttgttctgcgt
ttcatttatatatttaccattcctacttctgggaattaagaacaacataa
atgtacttgagctaaaaagttttctaatatctgttattttgtttttgtag
ttttgttttttactcttttgattttattttattttaaaccctattcctcc
cacctggagcagctcttggctgtgaacaaattttcttaagccgtgttcct
cctgtcttgagggattccttgagattcctttaaaaacaatttatatttac
ttattgtttgtcccatagtctagccactcttcctcccattctcggatcat
tctcacagtgcgagccttcactcacttcttggtgaagcagcagcccattg
tagtccttcactcactttttgacaaagcagaggcgcagtgcaggtcttca
ctcacctcttgacggagtggcgacccaatgcggatctacactcacttcct
tttttttatatttttttttattttggtttttgggtttccgagacagggtt
ctctgtattcctggctgtcggagctctttttgaggcagctggcctgaatc
aaaatctgtctgctctgcctcaagtgctggattaagggggggcaccacac
gggcttgcttattctatgaagtggcggtcatggtgttacctacccttgac
aatgaaaccaatgcaaagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144289987_144291162
seq2: B6Ng01-127E09.b_46_1211

seq1  GAATTCCTGTCTGACTTCTTTCGATAATGAACAGCAATGTGGAAGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGACTTCTTTCGATAATGAACAGCAATGTGGAAGTGTAA  50

seq1  GCTGAATGACGTTCTCCAAGTTGCCGTTTGACTGTGGTATTTTATTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGACGTTCTCCAAGTTGCCGTTTGACTGTGGTATTTTATTGCAG  100

seq1  CAATAGAAATCCTAATAAAGGCAAGGGGTTCATTTCTTCTTTTAAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAATCCTAATAAAGGCAAGGGGTTCATTTCTTCTTTTAAGCTTT  150

seq1  GAAAGGCTTTTGAAACAAGGTGAGCCTCCCGGGTGCCTTCACAGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTTTGAAACAAGGTGAGCCTCCCGGGTGCCTTCACAGGAGAAC  200

seq1  ACCATTGCGTGTGGGTGGCTCATGCTCGCTAGAATCTGCTTCCCCAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCGTGTGGGTGGCTCATGCTCGCTAGAATCTGCTTCCCCAATTC  250

seq1  TTAGAACCCTTCACATCACAAGGATCGCCTGGCGTGGGTAGGTCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCCTTCACATCACAAGGATCGCCTGGCGTGGGTAGGTCTCTGTT  300

seq1  TTCCATCAATAGGCTCCCCTGTTAGCTCTCAAACCTGGGACAAATGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAATAGGCTCCCCTGTTAGCTCTCAAACCTGGGACAAATGGCTG  350

seq1  CGGTGTCTACTTAAACCATCAAGGCAGACCTGTCCACCAGGTTCCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTCTACTTAAACCATCAAGGCAGACCTGTCCACCAGGTTCCCCCAG  400

seq1  CATCCCCTGGTTCCTACCTGTTACAGAATATGGCTGGCACACCCCAACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGGTTCCTACCTGTTACAGAATATGGCTGGCACACCCCAACGC  450

seq1  TACCCTAAACTACTCGAGCTCAGGGGCTGGTCTGCCCTTTCCCCAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAAACTACTCGAGCTCAGGGGCTGGTCTGCCCTTTCCCCAGTGGC  500

seq1  TCTTCCCTGTATAATCAGCCATTCTGATGACCTAGCCCCTTTGACTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTGTATAATCAGCCATTCTGATGACCTAGCCCCTTTGACTTTAC  550

seq1  CCTTTACCCTTCTGGCCTCTCCCTCTTCCTTCTTCTCCCCTTCCTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCCTTCTGGCCTCTCCCTCTTCCTTCTTCTCCCCTTCCTTTCTC  600

seq1  CTCTCCCTTCTCCCTCTCCTTCTTCCCCTCTCCCCTCTCTCTTCTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCTCCCTCTCCTTCTTCCCCTCTCCCCTCTCTCTTCTATTCC  650

seq1  CCTCTCCCCTCTATTCCTCTCTGACCCCTCCCCTCTCTCCTCTCCT-CCC  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTCTCCCCTCTATTCCTCTCTGACCCCTCCCCTCTCTCCTCTCCTCCCC  700

seq1  TTCTCTCTTCCCTCTGTTCCCCAGTCCCCTCTCCCCTGGTGGCTAGGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCCTCTGTTCCCCAGTCCCCTCTCCCCTGGTGGCTAGGCAC  750

seq1  AGGGTCATGTCTTCTCTGGCCTCCCCCAAATGTGTCTGCCTCTGGCCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATGTCTTCTCTGGCCTCCCCCAAATGTGTCTGCCTCTGGCCATG  800

seq1  CTCTTCCTTTTATCTATAATAAACCTTCTCCTCCACCATACCTAGGAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTTATCTATAATAAACCTTCTCCTCCACCATACCTAGGAGCA  850

seq1  GTC-TTGT-CCTTTCTTTATCTTTTCTTTTTTCATTCATCCCCTTTTTTT  897
      ||| |||| ||||||||||||||||||||||| |||||||||| ||||||
seq2  GTCTTTGTCCCTTTCTTTATCTTTTCTTTTTTTATTCATCCCC-TTTTTT  899

seq1  CCTGAAAGGAGTTTGGGTGCTATCACCAAGTGACTGCCCTTCCTCACACA  947
      ||||||||||| |||||||||||||| |  ||||||||||||||||||| 
seq2  CCTGAAAGGAG-TTGGGTGCTATCACAAGTTGACTGCCCTTCCTCACAC-  947

seq1  ACTTCCATCCAGGCGGACCCGCCCAGGGAAGAGGCAAAGCTTTGGAAACA  997
      ||||||||||||||||| |||||   ||||||||||||||||||||||||
seq2  ACTTCCATCCAGGCGGA-CCGCC--AGGAAGAGGCAAAGCTTTGGAAACA  994

seq1  TTTGCGGTTACAATTTTGCTGGGCTGGTTCCTC-TGCCCCTCTCCTTCAC  1046
      ||||||||||||| |||||| |||||| | ||| ||||| ||| |||   
seq2  TTTGCGGTTACAA-TTTGCTTGGCTGGGTTCTCTTGCCCTTCTTCTTTCA  1043

seq1  AGCCCTG-TGTGG-TACACTGGCTTCCTTGCAGCAT-GAATTCTGGCGAA  1093
      |||| || ||||| ||||||||||| |||||||||| || |||||||  |
seq2  AGCCTTGTTGTGGTTACACTGGCTTTCTTGCAGCATGGATTTCTGGC--A  1091

seq1  CTTTAGCTAGCAGCACACCAGCAGGAAATATGTGGTCAGGAGGAGAGAGG  1143
      |||||| | |||||||| ||||||||||||||| | | | |||||||| |
seq2  CTTTAG-TTGCAGCACA-CAGCAGGAAATATGTTGAC-GAAGGAGAGA-G  1137

seq1  AGCTGAAACTTATTCCAACACCCAGTCTGCTAT  1176
      ||||  || |||| ||||||||  || ||||||
seq2  AGCT-TAATTTATCCCAACACC--GT-TGCTAT  1166

seq1: chr3_144425824_144426885
seq2: B6Ng01-127E09.g_70_1091 (reverse)

seq1  CACTCTTTGCATTGGGTCTACGATTCGTCAAGAGGTGAGTGAAAACCCAC  50
      ||||||||||||||| |  |    | |||||| |||  || |     |||
seq2  CACTCTTTGCATTGGTTTCA----TTGTCAAG-GGTAGGTAA-----CAC  40

seq1  ACTGAACCGCCACTTCATTAGGAAGTAAGCGAAGGCCCGGTGTGGTGGCC  100
        || |||||||||||| |||  | ||||| |||  || |||||||| ||
seq2  CATG-ACCGCCACTTCA-TAG--AATAAGC-AAG--CCCGTGTGGTGCCC  83

seq1  CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGCAGGCAGATTTCTGAGT  150
      |   || ||||| |||||||||  |||||||||||| ||||||| ||| |
seq2  C---CCCTTAAT-CCAGCACTT--GAGGCAGAGCAGACAGATTT-TGA-T  125

seq1  TCGAGGCCAGCCTGGCCTACAAAGAGGGCTCCCGGACAGCCAGGGATATA  200
      || ||||||||   |||| |||| || |||||  ||||||||||   |||
seq2  TC-AGGCCAGC--TGCCT-CAAAAAGAGCTCC--GACAGCCAGG--AATA  167

seq1  CAGAGAAACCCTGTCTCGAAAAACCAAAAAACCAAAAAAAAAAAAAAAAA  250
      ||||| |||||||||||| ||| ||||||| |      |||| |||||||
seq2  CAGAG-AACCCTGTCTCGGAAACCCAAAAACC------AAAATAAAAAAA  210

seq1  AAAAAAAAAAAAAGGAAGTGAGTGTAGATCCGCATTGGGTCGCCACTCCG  300
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAAAAAGGAAGTGAGTGTAGATCCGCATTGGGTCGCCACTCCG  260

seq1  TCAAGAGGTGAGTGAAGACCTGCACTGCGCCTCTGCTTTGTCAAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGTGAGTGAAGACCTGCACTGCGCCTCTGCTTTGTCAAAAAGTG  310

seq1  AGTGAAGGACTACAATGGGCTGCTGCTTCACCAAGAAGTGAGTGAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGACTACAATGGGCTGCTGCTTCACCAAGAAGTGAGTGAAGGCT  360

seq1  CGCACTGTGAGAATGATCCGAGAATGGGAGGAAGAGTGGCTAGACTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGTGAGAATGATCCGAGAATGGGAGGAAGAGTGGCTAGACTATGG  410

seq1  GACAAACAATAAGTAAATATAAATTGTTTTTAAAGGAATCTCAAGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAATAAGTAAATATAAATTGTTTTTAAAGGAATCTCAAGGAATC  460

seq1  CCTCAAGACAGGAGGAACACGGCTTAAGAAAATTTGTTCACAGCCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGACAGGAGGAACACGGCTTAAGAAAATTTGTTCACAGCCAAGAG  510

seq1  CTGCTCCAGGTGGGAGGAATAGGGTTTAAAATAAAATAAAATCAAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGTGGGAGGAATAGGGTTTAAAATAAAATAAAATCAAAAGAG  560

seq1  TAAAAAACAAAACTACAAAAACAAAATAACAGATATTAGAAAACTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAAACTACAAAAACAAAATAACAGATATTAGAAAACTTTTTA  610

seq1  GCTCAAGTACATTTATGTTGTTCTTAATTCCCAGAAGTAGGAATGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTACATTTATGTTGTTCTTAATTCCCAGAAGTAGGAATGGTAAA  660

seq1  TATATAAATGAAACGCAGAACAACAATCATTCAAACAACAAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATGAAACGCAGAACAACAATCATTCAAACAACAAAACAAAACA  710

seq1  AAACATAAATTGACAGACATATGGACAAATTGGTGTACGAAGGTCAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAATTGACAGACATATGGACAAATTGGTGTACGAAGGTCAGACA  760

seq1  ACAGACAAAGAGGGACTATAACTTGATGTCTCAAAGAGACCCAGATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAAGAGGGACTATAACTTGATGTCTCAAAGAGACCCAGATATTC  810

seq1  TAATCAAAACTAAGACTATCTCCATAGGAGCCAGAGAGGAAGCAGGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAACTAAGACTATCTCCATAGGAGCCAGAGAGGAAGCAGGACAG  860

seq1  CTCCCGATTTCCTCCTTTCTCTAGGAGAGCTCTGAAATAGCTTATTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGATTTCCTCCTTTCTCTAGGAGAGCTCTGAAATAGCTTATTTCCA  910

seq1  TTTTCCTTCTCTTTTGTTAAAAGGTCCTGAACAGGGGAGAACTGCTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTCTCTTTTGTTAAAAGGTCCTGAACAGGGGAGAACTGCTTTTC  960

seq1  TGAAACCTATTCTCTCTCTCATGTTCAAAGTCTAACTCTTTGTCTCTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTATTCTCTCTCTCATGTTCAAAGTCTAACTCTTTGTCTCTTTC  1010

seq1  TTCTGGGAATTC  1062
      ||||||||||||
seq2  TTCTGGGAATTC  1022