BAC Information

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BAC

Clone NameB6Ng01-128B21
Chromosome3 (Build37)
Map Location 104,872,216 - 105,063,071
singlet/doubletdoublet
Overlap gene4930564D02Rik
Upstream geneMagi3, EG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128B21.bB6Ng01-128B21.g
ACCDH930055DH930056
length1,1711,096
definitionDH930055|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B21, 5' end.DH930056|Mus musculus domesticus DNA, BAC clone: B6Ng01-128B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,872,216 - 104,873,078)(105,061,980 - 105,063,071)
sequence
gaattcttgtgtcttagtcactgttccattgctgtgaaaaggcaccatga
ccaaggcatcttatgaaggaaagcatttaacagggcatttccttgtagtt
tcaggagactagtccaatatctttactgcagggagcatggtggcacaaag
gcaggcctggctctgagcagtagctgagagcttatgtcttgatctgcagt
taggaggcagaaagagagactctgggtctggtgtgggccattgaaacccg
tctccagggacacaccttctccaatgactccatgcctctgaatcctttct
aaatagtctaccagctgggaaacagactttcaaatagatgagcctacaag
agccatcctccttgaaaccacatcttgggtgaattccaaatactgtgtat
ttttgtcttgtgtcagatattttgtatttttttttttaaagatttattta
tttattatatgtaagtacactgtagctgtcttcagacactccagaagagg
gcgttacggatggttgtgagccaccatgtggttgctgggatttgaactcc
ggaccttcggaagagcagtcgggtgctcttacccactgagccatctcacc
agcccatattttgtatttttataaatgctctataaatgggctttgatctg
tgatataattaggcttctggaaactacttgatcttttggatttccttttc
ttaagtataactagagtaatttttggactctggctaccattgctccacca
ctaaggtgatcccagctaaggaaaaacaattacttgtgggttatgaggtt
ttccaccaaggccagtaggctgctagctcaccctggggacttcctcctct
attccttttcgaatataattttatttctaacttcgagtgcttttgaaaca
aatcaaagactctcccctaggaatttggctaggagttataaatattgtta
aagtgttgtgatagatcttttattgtaagcactttaatttgtttcattaa
aatattattatttcacttttctcttccttttctcctcccagccccctccc
atgtcttccttccaacctcttccttaatccttctcaatttataaggcctc
tttttctttcattgctcgttgttacacggcaccaacacccatgccatctg
ttattctgctgcatctttatt
gaattcatgttctaggatgagttaagggtctcttggagaagacagagact
gcatatgaggaaaagtaatctatcagggaagttatgagctatcaggtgca
tgagaggcaaatgagaatggctgagatacaacacgctgaataaaggaagt
aggtcaggccaaggagaaaccataaagaccaaaaaaagcagtagatggtg
ggaattgtactatttggggaaaggaaaataacaaccaggtctatgaactg
gccaaggggttcacagcatgaaggactaactagacagacacatctgcaaa
tgaaggttggggtgcacattcaaagctgtggcccaagattagtctacctt
gagctgtaaaccctgggccacatcctcagagagcagcagggactcccaga
ctggcttaaggatgctaagcaggaatattggtaaatagatggttgagaca
atatggatccaggcctggtctagcctttgacagacacggaaactttgctt
caatgtacttgtctgggtgagcccttttccttattctgtagttgagaggt
ttaaattggaagctctctaatggtcccttcaattttaacagagtaggatt
tggccatacctctgtttcattgtgatagcagctgcctggaaatagaactt
cctataccaactcccctccccctcacccctgcttgtgtttgtttttgcac
tgtctagatgtctcttaaaatgcccatggcaattgtagatctgctgtttc
tctttccatatctgagactacaaatgccaaaactaaggagatcacacctt
acagattaacttttaaacatattttattttaattttcaataatgtgtaca
tgtgcacatcttgtatggggtgtgttggcatgttaatacagatgtctgtt
ggaggctagaagccagttttggatcttttggacaggagttacatgtggtt
tttttgagcagccctatgtgggttctgggaacaaacttggatcctcttgc
aaaagcgatataatgttcttaactgctcagctacatggccaatccccgaa
tttattttttgtctcacttctttggtcactgaaagttatgagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104872216_104873078
seq2: B6Ng01-128B21.b_353_1218

seq1  GTCTACCAGCTGGGAAACAGACTTTCAAATAGATGAGCCTACAAGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAGCTGGGAAACAGACTTTCAAATAGATGAGCCTACAAGAGCCA  50

seq1  TCCTCCTTGAAACCACATCTTGGGTGAATTCCAAATACTGTGTATTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTGAAACCACATCTTGGGTGAATTCCAAATACTGTGTATTTTTG  100

seq1  TCTTGTGTCAGATATTTTGTATTTTTTTTTTTAAAGATTTATTTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCAGATATTTTGTATTTTTTTTTTTAAAGATTTATTTATTTAT  150

seq1  TATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTT  200

seq1  ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACC  250

seq1  TTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCC  300

seq1  ATATTTTGTATTTTTATAAATGCTCTATAAATGGGCTTTGATCTGTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTATTTTTATAAATGCTCTATAAATGGGCTTTGATCTGTGATA  350

seq1  TAATTAGGCTTCTGGAAACTACTTGATCTTTTGGATTTCCTTTTCTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGCTTCTGGAAACTACTTGATCTTTTGGATTTCCTTTTCTTAAG  400

seq1  TATAACTAGAGTAATTTTTGGACTCTGGCTACCATTGCTCCACCACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTAGAGTAATTTTTGGACTCTGGCTACCATTGCTCCACCACTAAG  450

seq1  GTGATCCCAGCTAAGGAAAAACAATTACTTGTGGGTTATGAGGTTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCCAGCTAAGGAAAAACAATTACTTGTGGGTTATGAGGTTTTCCA  500

seq1  CCAAGGCCAGTAGGCTGCTAGGCTCACCCTGGGGACTTCCTCCTCTATTC  550
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAAGGCCAGTAGGCTGCTA-GCTCACCCTGGGGACTTCCTCCTCTATTC  549

seq1  C-TTTCGAATATAATTTTA-TTCTAACTTCGAGTGCTTTTGAAACAAATC  598
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTTCGAATATAATTTTATTTCTAACTTCGAGTGCTTTTGAAACAAATC  599

seq1  AAAAGACTCTCCCCTAGGAATTTGGCTAGGAGTTATAAATATTGTTAAAA  648
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AAAGACTCTCCCCTAGGAATTTGGCTAGGAGTTATAAATATTGTT-AAA  647

seq1  GTGTTGTGATAGATC-TTTATTGTAAGCACTTTAATTTTGTTTCAATTAA  697
      ||||||||||||||| ||||||||||||||||||| |||||||| |||||
seq2  GTGTTGTGATAGATCTTTTATTGTAAGCACTTTAA-TTTGTTTC-ATTAA  695

seq1  AATATTATTATATCACTTTTCTCTTCCTTTTCTCCTCCCAG-CCCCTCCC  746
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AATATTATTATTTCACTTTTCTCTTCCTTTTCTCCTCCCAGCCCCCTCCC  745

seq1  ATGTCTTCCTTCCTA-CTCTTCCTTAATCCTTCTCAAATTTATA--GCCT  793
      ||||||||||||| | ||||||||||||||||||| ||||||||  ||||
seq2  ATGTCTTCCTTCCAACCTCTTCCTTAATCCTTCTC-AATTTATAAGGCCT  794

seq1  CTTTTTCTTTAATTGCT-GTTGTTACA-TGCACACACACACATG-CATCT  840
      |||||||||| |||||| |||||||||  ||||  |||| |||| |||||
seq2  CTTTTTCTTTCATTGCTCGTTGTTACACGGCACCAACACCCATGCCATCT  844

seq1  GTATATCCTGCTGCATCTTTATT  863
      || ||| ||||||||||||||||
seq2  GT-TATTCTGCTGCATCTTTATT  866

seq1: chr3_105061980_105063071
seq2: B6Ng01-128B21.g_67_1162 (reverse)

seq1  TCTACTCATAAACATTCAGTGACACAAGAAGTAGAGACAAAAAAATAAAT  50
      ||||||||| ||| |||||||||  ||||||| ||||| |||||||||||
seq2  TCTACTCAT-AACTTTCAGTGACCAAAGAAGT-GAGAC-AAAAAATAAAT  47

seq1  CTGGGGATTGGCAATGTAGCTGGGCAGTTAAGAACA-TATATCGCTTTTG  99
        |||||||||| ||||||||| ||||||||||||| |||||||||||||
seq2  TCGGGGATTGGCCATGTAGCTGAGCAGTTAAGAACATTATATCGCTTTTG  97

seq1  C-AGAGGATCCAAGTTTTGTTCCCAGGACCCACATAGGGCTGCTC-AAAA  147
      | |||||||||||| ||||||||||| |||||||||||||||||| ||||
seq2  CAAGAGGATCCAAG-TTTGTTCCCAGAACCCACATAGGGCTGCTCAAAAA  146

seq1  AACCACATGTAACTCTTGTTCCAAAAGATCCAAAACTGGCTTCTAGCCTC  197
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  AACCACATGTAACTCCTG-TCCAAAAGATCCAAAACTGGCTTCTAGCCTC  195

seq1  C-ACAGACATCTGTATTAACATGC--ACACACCCCATAC-AGATGTGCAC  243
      | ||||||||||||||||||||||  ||||||||||||| ||||||||||
seq2  CAACAGACATCTGTATTAACATGCCAACACACCCCATACAAGATGTGCAC  245

seq1  ATGTACACATTATTGAAAATTAAAAT-AAATATGTTTAAAAGTTAATCTG  292
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTACACATTATTGAAAATTAAAATAAAATATGTTTAAAAGTTAATCTG  295

seq1  TAAGGTGTGATCTCCTTAGTTTTGGCATTTGTAGTCTCAGATATGGAAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTGATCTCCTTAGTTTTGGCATTTGTAGTCTCAGATATGGAAAG  345

seq1  AGAAACAGCAGATCTACAATTGCCATGGGCA-TTTAAGAGACATCTAGAC  391
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAAACAGCAGATCTACAATTGCCATGGGCATTTTAAGAGACATCTAGAC  395

seq1  AGTGCAAAAACAAACACAAGCAGGGGTGAGGGGGAGGGGAGTTGGTATAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAAACAAACACAAGCAGGGGTGAGGGGGAGGGGAGTTGGTATAG  445

seq1  GAAGTTCTATTTCCAGGCAGCTGCTATCACAATGAAACAGAGGTATGGCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTATTTCCAGGCAGCTGCTATCACAATGAAACAGAGGTATGGCC  495

seq1  AAATCCTACTCTGTTAAAATTGAAGGGACCATTAGAGAGCTTCCAATTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTACTCTGTTAAAATTGAAGGGACCATTAGAGAGCTTCCAATTTA  545

seq1  AACCTCTCAACTACAGAATAAGGAAAAGGGCTCACCCAGACAAGTACATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCAACTACAGAATAAGGAAAAGGGCTCACCCAGACAAGTACATT  595

seq1  GAAGCAAAGTTTCCGTGTCTGTCAAAGGCTAGACCAGGCCTGGATCCATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGTTTCCGTGTCTGTCAAAGGCTAGACCAGGCCTGGATCCATA  645

seq1  TTGTCTCAACCATCTATTTACCAATATTCCTGCTTAGCATCCTTAAGCCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAACCATCTATTTACCAATATTCCTGCTTAGCATCCTTAAGCCA  695

seq1  GTCTGGGAGTCCCTGCTGCTCTCTGAGGATGTGGCCCAGGGTTTACAGCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAGTCCCTGCTGCTCTCTGAGGATGTGGCCCAGGGTTTACAGCT  745

seq1  CAAGGTAGACTAATCTTGGGCCACAGCTTTGAATGTGCACCCCAACCTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGACTAATCTTGGGCCACAGCTTTGAATGTGCACCCCAACCTTC  795

seq1  ATTTGCAGATGTGTCTGTCTAGTTAGTCCTTCATGCTGTGAACCCCTTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGATGTGTCTGTCTAGTTAGTCCTTCATGCTGTGAACCCCTTGG  845

seq1  CCAGTTCATAGACCTGGTTGTTATTTTCCTTTCCCCAAATAGTACAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCATAGACCTGGTTGTTATTTTCCTTTCCCCAAATAGTACAATTC  895

seq1  CCACCATCTACTGCTTTTTTTGGTCTTTATGGTTTCTCCTTGGCCTGACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCTACTGCTTTTTTTGGTCTTTATGGTTTCTCCTTGGCCTGACC  945

seq1  TACTTCCTTTATTCAGCGTGTTGTATCTCAGCCATTCTCATTTGCCTCTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTTATTCAGCGTGTTGTATCTCAGCCATTCTCATTTGCCTCTC  995

seq1  ATGCACCTGATAGCTCATAACTTCCCTGATAGATTACTTTTCCTCATATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTGATAGCTCATAACTTCCCTGATAGATTACTTTTCCTCATATG  1045

seq1  CAGTCTCTGTCTTCTCCAAGAGACCCTTAACTCATCCTAGAACATGAATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGTCTTCTCCAAGAGACCCTTAACTCATCCTAGAACATGAATT  1095

seq1  C  1092
      |
seq2  C  1096