BAC Information

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BAC

Clone NameB6Ng01-128D01
Chromosome3 (Build37)
Map Location 45,012,333 - 45,188,750
singlet/doubletdoublet
Overlap geneLOC100039296, Pcdh10
Upstream geneLOC676484
Downstream geneLOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D01.bB6Ng01-128D01.g
ACCDH930109DH930110
length1,1901,075
definitionDH930109|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D01, 5' end.DH930110|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,187,556 - 45,188,750)(45,012,333 - 45,013,425)
sequence
gaattcagcaaacatctttcatgggtgaaatccaaatgggagtagaaaaa
aaatcaaataattttatttcatcttaaggtacatagtttatttcttatag
gttcttttagtattggtaattagtattagatcttacacacacttaaagaa
caaactcatatttgaaatttgaagtaaaatgtaatataaaagttccattg
tactataactgccacctttggccattagttagcacacataaaccaatgct
tgagctcagattttgattcttttcaaaataggaggagatcaaagatgcct
agacaacactaattatcaaatgtctattactaatgttatgaagcccacag
acacctggactgcaaactaaaacccatttgtgacttttaacatcatcccc
ttctccagtgatactttgtatgcaaaatacctttctctagaatgcatggt
gtttagattctagagtacagttctaacctcaacacttcaaaagatgtaac
aatttttacaaccttctttggagcacagtgaccaatggaagacagaccat
cacctaactcatcatccattggagaggtatttaaataaacagctatataa
tgggtattagattaacacttaccagctgactggccacggttggtgacatc
atgatcactgtctccctgttcactgtctccatgaccactgtccttagagc
ttactatgtcagcttcctggaatgcagaactagaaacataaaaaggagaa
tgttagaattaaaggaaaaaaaaaaaaggtgaacaaacacagaaaacatt
cttctgccaccacatggtcactaatgtgtgctgcagactcttggatttcc
atatgaagctcatttttaccacttaataacttccctaaaaacggagcctt
cacagtcaattgcaacattgaaacatgtgaagtttacacattattctatg
actggagattagaacatgcctatgtctttttaaaaattaggttatatatg
aacatcagtgttgatagtcatagagctgggaagtattttatatttttaca
taaatgaacacattgttagctatcttaatagaggataatgaattatttta
gaagtagtgtgcctgcctcagtttaatgctttatgcattgcatctttcaa
tgggaacaacacacatctacttctctcctatactttgtag
gaattctagatgatcaggagccaccgtgaggctttgagaaaataaaccta
ggtcctctccaagaggaacaagtactcttaaccagtgatccagctcacaa
gtccatgtttttccttacttagcatactatttgttagcaattttacagtg
agaaatccatacttctattctctctaactggtatgagttatttttctatc
taaactttcagaacaagtttatgctgatgtctccatgtaggataaattaa
tggtctctaagtatgttaatatcagtacactatgaacttttttaaactga
cctcttcagagattcccaaattaatgtacatgtgaccaattgaatacaaa
atataatcatattgtgttattcacattcatatcaagaattactaaaaaat
gcttagtttattcattcacttatacatacataatgaccacctgtgaaaag
ctaggtttgttggatgtattatctggggtgctgtgtgttgacctgatgct
gtatagaataaaaaatgttacctaaattatagagaaaattgaatatgtaa
atgaaaatatttacaaagtgtaaagggaaggttgagaatgattttggaaa
tgatttcaattgaaatatatgaaacaaaagaactcttgtgtttcaaaaaa
acttaatatgtgcatatgtacatatattacatatacaaatatgtacatat
agttctcagaggcaaatgagaaatatataaataaaacttccaaagggtga
gtccattaaaatccttagaccatatgggtctaaaacaggaaaatttaata
ggcatctaaaaaattcaggagtagagctcacgcatcatgatccaaagcag
tctctccatggaaacccactgacccacacagccagaaaattagctgagtg
attttcactctctttccatcctctgatttcaattcccagactatttcact
ttggtagcagaccatattctagagtcactccttcctctgtgctcattcaa
gagactacacaagtttcctagactttcttctcacctaatcctttctctcc
aggccacattgaacacctctgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45187556_45188750
seq2: B6Ng01-128D01.b_48_1237 (reverse)

seq1  CTACCAAGTATAAGGAG-GAAGTAGATGTGTGTTGTTTCATATGAAAAGA  49
      |||| |||||| ||||| ||||||||||||||||| |||  ||  |||||
seq2  CTACAAAGTAT-AGGAGAGAAGTAGATGTGTGTTG-TTCCCATTGAAAGA  48

seq1  TGCAATGCATAAAGCATTTTAAACTGAGGCAGGCACAACTAC-TCT-ACA  97
      ||||||||||||||||  |||||||||||||||||| ||||| ||| | |
seq2  TGCAATGCATAAAGCA--TTAAACTGAGGCAGGCAC-ACTACTTCTAAAA  95

seq1  TAATTCATTTATCTCTA-TAAGATTAGCTATACAATGTTGTTCATTTATG  146
      |||||||||   ||||| ||||| |||||| |||||| ||||||||||||
seq2  TAATTCATTATCCTCTATTAAGA-TAGCTA-ACAATG-TGTTCATTTATG  142

seq1  TAAAAATTATAAAATACTTTTCCAGCTTCTATGACTTATTCACACTGATG  196
      |||||| |||||||||| || ||||| |||||||| |||  |||||||||
seq2  TAAAAA-TATAAAATAC-TTCCCAGC-TCTATGAC-TATCAACACTGATG  188

seq1  TTCATATAT-ATCTTATTTTTAAAAAGACATAGGCATGTTCTTATCTCCA  245
      ||||||||| | || ||||||||||||||||||||||||||| |||||||
seq2  TTCATATATAACCTAATTTTTAAAAAGACATAGGCATGTTCTAATCTCCA  238

seq1  GTCATAGAATAATGTGTAAACTTCACATGTTTC-ATGTTGCAATTGACTG  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCATAGAATAATGTGTAAACTTCACATGTTTCAATGTTGCAATTGACTG  288

seq1  TGAAGGCTCCGTTTTTAGGG-AGTTATTAAGTGGTAAAAATGAGCTTCAT  343
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAGGCTCCGTTTTTAGGGAAGTTATTAAGTGGTAAAAATGAGCTTCAT  338

seq1  ATGGAAATCCAAGAGTCTGCAGCACACATTAGTGACCATGTGGTGGCAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCCAAGAGTCTGCAGCACACATTAGTGACCATGTGGTGGCAGA  388

seq1  AGAATGTTTTCTGTGTTTGTTCACCTTTTTTTTTTTTCCTTTAATTCTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTTCTGTGTTTGTTCACCTTTTTTTTTTTTCCTTTAATTCTAA  438

seq1  CATTCTCCTTTTTATGTTTCTAGTTCTGCATTCCAGGAAGCTGACATAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTTTTTATGTTTCTAGTTCTGCATTCCAGGAAGCTGACATAGT  488

seq1  AAGCTCTAAGGACAGTGGTCATGGAGACAGTGAACAGGGAGACAGTGATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAAGGACAGTGGTCATGGAGACAGTGAACAGGGAGACAGTGATC  538

seq1  ATGATGTCACCAACCGTGGCCAGTCAGCTGGTAAGTGTTAATCTAATACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCACCAACCGTGGCCAGTCAGCTGGTAAGTGTTAATCTAATACC  588

seq1  CATTATATAGCTGTTTATTTAAATACCTCTCCAATGGATGATGAGTTAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATAGCTGTTTATTTAAATACCTCTCCAATGGATGATGAGTTAGG  638

seq1  TGATGGTCTGTCTTCCATTGGTCACTGTGCTCCAAAGAAGGTTGTAAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCTGTCTTCCATTGGTCACTGTGCTCCAAAGAAGGTTGTAAAAA  688

seq1  TTGTTACATCTTTTGAAGTGTTGAGGTTAGAACTGTACTCTAGAATCTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACATCTTTTGAAGTGTTGAGGTTAGAACTGTACTCTAGAATCTAA  738

seq1  ACACCATGCATTCTAGAGAAAGGTATTTTGCATACAAAGTATCACTGGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCATTCTAGAGAAAGGTATTTTGCATACAAAGTATCACTGGAG  788

seq1  AAGGGGATGATGTTAAAAGTCACAAATGGGTTTTAGTTTGCAGTCCAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGATGATGTTAAAAGTCACAAATGGGTTTTAGTTTGCAGTCCAGGT  838

seq1  GTCTGTGGGCTTCATAACATTAGTAATAGACATTTGATAATTAGTGTTGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGCTTCATAACATTAGTAATAGACATTTGATAATTAGTGTTGT  888

seq1  CTAGGCATCTTTGATCTCCTCCTATTTTGAAAAGAATCAAAATCTGAGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATCTTTGATCTCCTCCTATTTTGAAAAGAATCAAAATCTGAGCT  938

seq1  CAAGCATTGGTTTATGTGTGCTAACTAATGGCCAAAGGTGGCAGTTATAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTGGTTTATGTGTGCTAACTAATGGCCAAAGGTGGCAGTTATAG  988

seq1  TACAATGGAACTTTTATATTACATTTTACTTCAAATTTCAAATATGAGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGAACTTTTATATTACATTTTACTTCAAATTTCAAATATGAGTT  1038

seq1  TGTTCTTTAAGTGTGTGTAAGATCTAATACTAATTACCAATACTAAAAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAAGTGTGTGTAAGATCTAATACTAATTACCAATACTAAAAGA  1088

seq1  ACCTATAAGAAATAAACTATGTACCTTAAGATGAAATAAAATTATTTGAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAAGAAATAAACTATGTACCTTAAGATGAAATAAAATTATTTGAT  1138

seq1  TTTTTTTCTACTCCCATTTGGATTTCACCCATGAAAGATGTTTGCTGAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTACTCCCATTTGGATTTCACCCATGAAAGATGTTTGCTGAAT  1188

seq1  TC  1195
      ||
seq2  TC  1190

seq1: chr3_45012333_45013425
seq2: B6Ng01-128D01.g_67_1141

seq1  GAATTCTAGATGATCAGGAGCCACCGTGAGGCTTTGAGAAAATAAACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGATCAGGAGCCACCGTGAGGCTTTGAGAAAATAAACCTA  50

seq1  GGTCCTCTCCAAGAGGAACAAGTACTCTTAACCAGTGATCCAGCTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTCCAAGAGGAACAAGTACTCTTAACCAGTGATCCAGCTCACAA  100

seq1  GTCCATGTTTTTCCTTACTTAGCATACTATTTGTTAGCAATTTTACAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTTTTTCCTTACTTAGCATACTATTTGTTAGCAATTTTACAGTG  150

seq1  AGAAATCCATACTTCTATTCTCTCTAACTGGTATGAGTTATTTTTCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCATACTTCTATTCTCTCTAACTGGTATGAGTTATTTTTCTATC  200

seq1  TAAACTTTCAGAACAAGTTTATGCTGATGTCTCCATGTAGGATAAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCAGAACAAGTTTATGCTGATGTCTCCATGTAGGATAAATTAA  250

seq1  TGGTCTCTAAGTATGTTAATATCAGTACACTATGAACTTTTTTAAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTAAGTATGTTAATATCAGTACACTATGAACTTTTTTAAACTGA  300

seq1  CCTCTTCAGAGATTCCCAAATTAATGTACATGTGACCAATTGAATACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAGAGATTCCCAAATTAATGTACATGTGACCAATTGAATACAAA  350

seq1  ATATAATCATATTGTGTTATTCACATTCATATCAAGAATTACTAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCATATTGTGTTATTCACATTCATATCAAGAATTACTAAAAAAT  400

seq1  GCTTAGTTTATTCATTCACTTATACATACATAATGACCACCTGTGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTTATTCATTCACTTATACATACATAATGACCACCTGTGAAAAG  450

seq1  CTAGGTTTGTTGGATGTATTATCTGGGGTGCTGTGTGTTGACCTGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTGTTGGATGTATTATCTGGGGTGCTGTGTGTTGACCTGATGCT  500

seq1  GTATAGAATAAAAAATGTTACCTAAATTATAGAGAAAATTGAATATGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAATAAAAAATGTTACCTAAATTATAGAGAAAATTGAATATGTAA  550

seq1  ATGAAAATATTTACAAAGTGTAAAGGGAAGGTTGAGAATGATTTTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATATTTACAAAGTGTAAAGGGAAGGTTGAGAATGATTTTGGAAA  600

seq1  TGATTTCAATTGAAATATATGAAACAAAAGAACTCTTGTGTTTCAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAATTGAAATATATGAAACAAAAGAACTCTTGTGTTTCAAAAAA  650

seq1  ACTTAATATGTGCATATGTACATATATTACATATACAAATATGTACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATGTGCATATGTACATATATTACATATACAAATATGTACATAT  700

seq1  AGTTCTCAGAGGCAAATGAGAAATATATAAATAAAACTTCCAAAGGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGAGGCAAATGAGAAATATATAAATAAAACTTCCAAAGGGTGA  750

seq1  GTCCATTAAAATCCTTAGACCATATGGGTCTAAAACAGGAAAATTTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTAAAATCCTTAGACCATATGGGTCTAAAACAGGAAAATTTAATA  800

seq1  GGCATCTAAAAAATTCAGGAGTAGAGCTCACGCATCATGATCCAAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTAAAAAATTCAGGAGTAGAGCTCACGCATCATGATCCAAAGCAG  850

seq1  TCTCTCCATGGAAACCCACTGACCCACACAGCCAGAAAATTAGCTGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATGGAAACCCACTGACCCACACAGCCAGAAAATTAGCTGAGTG  900

seq1  ATTTTCACTCCTCTTTCCATCCTCTGATTTCAATTCCCCAGACTTATTTT  950
      ||||||||| ||||||||||||||||||||||||| ||||||||   |||
seq2  ATTTTCACT-CTCTTTCCATCCTCTGATTTCAATT-CCCAGACT--ATTT  946

seq1  CACTTTGGTAGCAGACCATATTCTAGAGTCACTCCTTCCTCTGTGCCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  CACTTTGGTAGCAGACCATATTCTAGAGTCACTCCTTCCTCTGTG-CTC-  994

seq1  AATTCAAAGAGACTACACAAAGGTTTCCTAGACCTTTCCTTTCTCACCTA  1050
       |||| ||||||||||||||  |||||||||| |||||  ||||||||||
seq2  -ATTC-AAGAGACTACACAA--GTTTCCTAGA-CTTTC--TTCTCACCTA  1037

seq1  ATCCCTTTCTCTCCCAGCCAACATTTGAAACACACTCTGCATG  1093
      || ||||||||| |||| | |||||   ||||| |||||||||
seq2  AT-CCTTTCTCT-CCAGGCCACATT--GAACAC-CTCTGCATG  1075