BAC Information

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BAC

Clone NameB6Ng01-129G15
Chromosome3 (Build37)
Map Location 17,540,061 - 17,730,933
singlet/doubletdoublet
Overlap geneENSMUSG00000074674, LOC100040120
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G15.bB6Ng01-129G15.g
ACCDH931002DH931003
length1,0821,048
definitionDH931002|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G15, 5' end.DH931003|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,540,061 - 17,541,148)(17,729,889 - 17,730,933)
sequence
gaattctgacatatctagacccataactcaagcatcacagcatccatttt
ttatgtgtagggcatcataaatcaatcagctgagcttaaccagaaatagg
ctttcaaaagcttaatatcatactcagaaatcaggattaatctttctcta
ttgtattgttgtttgattacagtcagccatctggtatttttgaattgtag
tcaatcataacattggtggaagagacagagctcatattaaaacctgccct
ttcaaaacactacattctcgaattcaaggtgatatacacaggaacaatac
aaatggcagaactaagaacaattaaatgggatttttttgttagctttatt
tgaaagctaatgtttcaaggctgtaggtcaagcaatgaactaaatataca
attctctatccattgttattcagtactttaaagctcatctataatcattt
tattaaaaactacaaggaagatatgaaatgaactggtagggcacatatta
gaagacatttattaatacagcttgttatcaagatagttgaaaatatatta
actcagactctcaaatgcctaagcactagaagaaaatgtgacactttctg
ctacattaactctttcctgacaagatttactgaatttcttccaaagtcat
gtatcagtgaatatgcttcgtacaactgatttcattccccaaatctgaat
cttctcactcaatattagattctattattttgaaaatgggttgtgagttc
tagaaaacagctaacttgtcttttgaaaattcagtatttgttcccataac
caaacatctaattttgattaaaaatgaattgtataaagttatgcaaaaat
gtattcataatcatcaacatcagaatactctcaattcttttaacagtggc
aaatatttaatcaactttctggaaattttcaggtaatactattttctatt
agatataataatacagaataaagtagagctacatacctagcatgtactgt
aaaagaatttcagaaataggatctgaaacatcacacaatcaatagatatt
tgtggtccagcaaatcatttcctaatttctca
gaattccttttgatgggtttttggtacactctcaaagaatattgaaatta
cctatagtgtctgttacaacatactgttgtttctaatgtacagtggggta
aggttggattttcttcatatacttccacccaaactacatctcaaaacaga
tcaatgagggagacagacatgagcattctgctgtcttctattaatccaga
caccaaaagacatttgttaaagtatataataatgccaaacttgtcacaaa
atgcagatatttttagaaaaccttgatatttgttttaatatgttgtggtt
ttatgatacattttaatgatatacagtttcaatttcttctgtgatagact
ttgatagatataatttatattcataaacagtgtttgacatattcaattgt
taagggtttacaggaatgctgaaagcaaaagtgatatatctatctattca
tttgtctatcaaaaccccgaatattaagcaggcatgaaatccattcagct
cttttaattttaatgagtctgttttagcatcttaaatactgagtgcagaa
aaacatacaagtgactagaaagcaacaaagatattcgttgtaaaaataaa
aatatcaagagaagaagcatcgtagcttttattcaaaaatcctttgtgtg
aatgagttcaaagttcaaagttaaagtacagttttgcagcatgcagtttt
aaaaaacaaaccaagctaaaccagctaagcacaagcaactgaggtcttgt
ctgcccccatagttccgttggctagtttgctggcaagcctctcacatttc
ccaggccatttagcccctgaggctagcctgcacctgataaaatgatagca
ctagagacttgtaataaccagtcggatccataacagtaaatctccaaccc
caaatgcctccacaaagaacacaaaactcaagctgcacacctagactggg
caaatgtaccttacagtgcttaatgcccaatctatgaaatgcctagctac
ttgtggcttcttccagaaccacgtgggaaagcctctatcttcccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17540061_17541148
seq2: B6Ng01-129G15.b_46_1127

seq1  GAATTCTGACATATCTAGACCCATAACTCAAGCATCACAGCATCCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACATATCTAGACCCATAACTCAAGCATCACAGCATCCATTTT  50

seq1  TTATGTGTAGGGCATCATAAATCAATCAGCTGAGCTTAACCAGAAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTAGGGCATCATAAATCAATCAGCTGAGCTTAACCAGAAATAGG  100

seq1  CTTTCAAAAGCTTAATATCATACTCAGAAATCAGGATTAATCTTTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAAAGCTTAATATCATACTCAGAAATCAGGATTAATCTTTCTCTA  150

seq1  TTGTATTGTTGTTTGATTACAGTCAGCCATCTGGTATTTTTGAATTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGTTGTTTGATTACAGTCAGCCATCTGGTATTTTTGAATTGTAG  200

seq1  TCAATCATAACATTGGTGGAAGAGACAGAGCTCATATTAAAACCTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATAACATTGGTGGAAGAGACAGAGCTCATATTAAAACCTGCCCT  250

seq1  TTCAAAACACTACATTCTCGAATTCAAGGTGATATACACAGGAACAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACACTACATTCTCGAATTCAAGGTGATATACACAGGAACAATAC  300

seq1  AAATGGCAGAACTAAGAACAATTAAATGGGATTTTTTTGTTAGCTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAGAACTAAGAACAATTAAATGGGATTTTTTTGTTAGCTTTATT  350

seq1  TGAAAGCTAATGTTTCAAGGCTGTAGGTCAAGCAATGAACTAAATATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTAATGTTTCAAGGCTGTAGGTCAAGCAATGAACTAAATATACA  400

seq1  ATTCTCTATCCATTGTTATTCAGTACTTTAAAGCTCATCTATAATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATCCATTGTTATTCAGTACTTTAAAGCTCATCTATAATCATTT  450

seq1  TATTAAAAACTACAAGGAAGATATGAAATGAACTGGTAGGGCACATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAACTACAAGGAAGATATGAAATGAACTGGTAGGGCACATATTA  500

seq1  GAAGACATTTATTAATACAGCTTGTTATCAAGATAGTTGAAAATATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATTTATTAATACAGCTTGTTATCAAGATAGTTGAAAATATATTA  550

seq1  ACTCAGACTCTCAAATGCCTAAGCACTAGAAGAAAATGTGACACTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACTCTCAAATGCCTAAGCACTAGAAGAAAATGTGACACTTTCTG  600

seq1  CTACATTAACTCTTTCCTGACAAGATTTACTGAATTTCTTCCAAAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTAACTCTTTCCTGACAAGATTTACTGAATTTCTTCCAAAGTCAT  650

seq1  GTATCAGTGAATATGCTTCGTACAACTGATTTCATTCCCCAAATCTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTGAATATGCTTCGTACAACTGATTTCATTCCCCAAATCTGAAT  700

seq1  CTTCTCACTCAATATTAGATTCTATTATTTTGAAAATGGGTTGTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTCAATATTAGATTCTATTATTTTGAAAATGGGTTGTGAGTTC  750

seq1  TAGAAAACAGCTAACTTGTCTTTTGAAAAATTCAGTATTTGTTCCCATAA  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGAAAACAGCTAACTTGTCTTTTG-AAAATTCAGTATTTGTTCCCATAA  799

seq1  CCAAACATCTAATTTTGATTAAAAATGAATTGTATAAAGTTATGCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCTAATTTTGATTAAAAATGAATTGTATAAAGTTATGCAAAAA  849

seq1  TGTATTCATAATCATCAACATCAGAATACTCTCAATTCTTTTAACAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATAATCATCAACATCAGAATACTCTCAATTCTTTTAACAGTGG  899

seq1  CAAATATTTAATCAACTTTCTGGAAATTTTCAGGTAATACTATTTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAATCAACTTTCTGGAAATTTTCAGGTAATACTATTTTCTAT  949

seq1  TAGATATAATAATACAGAATAAAGTAGAGCTACATACCTAGCATGTACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAATAATACAGAATAAAGTAGAGCTACATACCTAGCATGTACTG  999

seq1  TAATAGAATTTCAGAAATAAGAATCTGAAACCATCAACCACAATCAAATA  1050
      ||| |||||||||||||| || |||||||| |||||  ||||||| ||||
seq2  TAAAAGAATTTCAGAAAT-AGGATCTGAAA-CATCA--CACAATC-AATA  1044

seq1  GATATTTGT-GTCCAGCATATCCATTTCCCTATTTCTCA  1088
      ||||||||| |||||||| || |||||||  ||||||||
seq2  GATATTTGTGGTCCAGCAAAT-CATTTCCTAATTTCTCA  1082

seq1: chr3_17729889_17730933
seq2: B6Ng01-129G15.g_68_1115 (reverse)

seq1  TCAGGAGAAGATAGA-GCTTCCCCACGTGG-TCTGGAAG-AGCCACAAGT  47
      ||||| ||||||||| |||| ||||||||| |||||||| ||||||||||
seq2  TCAGGGGAAGATAGAGGCTTTCCCACGTGGTTCTGGAAGAAGCCACAAGT  50

seq1  AGCTAGGCATTTCATAGA-TGGGCAATAAGCACTGTAAGGTACATTTGCC  96
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  AGCTAGGCATTTCATAGATTGGGCATTAAGCACTGTAAGGTACATTTGCC  100

seq1  CAGTCTAGGTGTGCAGCTTGAGTTTTGTGTTCTTTGTGGAGGCATTTTGG  146
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGTCTAGGTGTGCAGCTTGAGTTTTGTGTTCTTTGTGGAGGCA-TTTGG  149

seq1  GGTTGGAGATTTACTGTTATGGATCCGACTGGTTATTACAAGTCTCTAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGATTTACTGTTATGGATCCGACTGGTTATTACAAGTCTCTAGT  199

seq1  GCTATCATTTTATCAGGTGCAGGCTAGCCTCAGGGGCTAAATGGCCTGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATTTTATCAGGTGCAGGCTAGCCTCAGGGGCTAAATGGCCTGGG  249

seq1  AAATGTGAGAGGCTTGCCAGCAAACTAGCCAACGGAACTATGGGGGCAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAGAGGCTTGCCAGCAAACTAGCCAACGGAACTATGGGGGCAGA  299

seq1  CAAGACCTCAGTTGCTTGTGCTTAGCTGGTTTAGCTTGGTTTGTTTTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTCAGTTGCTTGTGCTTAGCTGGTTTAGCTTGGTTTGTTTTTTA  349

seq1  AAACTGCATGCTGCAAAACTGTACTTTAACTTTGAACTTTGAACTCATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATGCTGCAAAACTGTACTTTAACTTTGAACTTTGAACTCATTC  399

seq1  ACACAAAGGATTTTTGAATAAAAGCTACGATGCTTCTTCTCTTGATATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGATTTTTGAATAAAAGCTACGATGCTTCTTCTCTTGATATTT  449

seq1  TTATTTTTACAACGAATATCTTTGTTGCTTTCTAGTCACTTGTATGTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTACAACGAATATCTTTGTTGCTTTCTAGTCACTTGTATGTTTT  499

seq1  TCTGCACTCAGTATTTAAGATGCTAAAACAGACTCATTAAAATTAAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTCAGTATTTAAGATGCTAAAACAGACTCATTAAAATTAAAAGA  549

seq1  GCTGAATGGATTTCATGCCTGCTTAATATTCGGGGTTTTGATAGACAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGGATTTCATGCCTGCTTAATATTCGGGGTTTTGATAGACAAAT  599

seq1  GAATAGATAGATATATCACTTTTGCTTTCAGCATTCCTGTAAACCCTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAGATATATCACTTTTGCTTTCAGCATTCCTGTAAACCCTTAA  649

seq1  CAATTGAATATGTCAAACACTGTTTATGAATATAAATTATATCTATCAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAATATGTCAAACACTGTTTATGAATATAAATTATATCTATCAAA  699

seq1  GTCTATCACAGAAGAAATTGAAACTGTATATCATTAAAATGTATCATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCACAGAAGAAATTGAAACTGTATATCATTAAAATGTATCATAAA  749

seq1  ACCACAACATATTAAAACAAATATCAAGGTTTTCTAAAAATATCTGCATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACATATTAAAACAAATATCAAGGTTTTCTAAAAATATCTGCATT  799

seq1  TTGTGACAAGTTTGGCATTATTATATACTTTAACAAATGTCTTTTGGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAAGTTTGGCATTATTATATACTTTAACAAATGTCTTTTGGTGT  849

seq1  CTGGATTAATAGAAGACAGCAGAATGCTCATGTCTGTCTCCCTCATTGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTAATAGAAGACAGCAGAATGCTCATGTCTGTCTCCCTCATTGAT  899

seq1  CTGTTTTGAGATGTAGTTTGGGTGGAAGTATATGAAGAAAATCCAACCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGAGATGTAGTTTGGGTGGAAGTATATGAAGAAAATCCAACCTT  949

seq1  ACCCCACTGTACATTAGAAACAACAGTATGTTGTAACAGACACTATAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTGTACATTAGAAACAACAGTATGTTGTAACAGACACTATAGGT  999

seq1  AATTTCAATATTCTTTGAGAGTGTACCAAAAACCCATCAAAAGGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAATATTCTTTGAGAGTGTACCAAAAACCCATCAAAAGGAATTC  1048