BAC Information

Click to search

BAC

Clone NameB6Ng01-129N07
Chromosome3 (Build37)
Map Location 28,842,478 - 28,962,976
singlet/doubletdoublet
Overlap genenone
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream gene6130401L20Rik, LOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129N07.bB6Ng01-129N07.g
ACCDH931312DH931313
length1,144926
definitionDH931312|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N07, 5' end.DH931313|Mus musculus domesticus DNA, BAC clone: B6Ng01-129N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,961,833 - 28,962,976)(28,842,478 - 28,843,386)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
tctggagtccaccttcttgagttctttaaatatattggatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatctgcctcccaacta
aatttattttgagctttttgagagaagacacagaagctggatatggtggt
ttatacctaaaatcttagcatttggaaaaggcactgagacaggagagttg
caagttccaggccaatctgacctgaacccactatgtagtataaacacaac
cttttatattagtttatatctttccaagcacctgagcgtgtttggtgagg
tactattgaataagtaaaatattttaattaaaattaaattttctaacaac
caacttagaaaactaaatgaccaatcaatcagtttcatgtgctgtggtta
atactttggttaatacacacacacacacacacacacacacacacacacac
atatacatgaacacatataatggttctttctttggttaaaatataaacac
catccttcttaagaaataaatcctttgaaggcaaaaagacatatgaaggt
ttttctgtaattaggcagcctctcctgccaatagtatagagaaagtagga
attacgctacattaaagcttgtcttggctcaattatagaacgagaatgag
gtgcccatggaatgctttccaggataaagtttcaaatcgttgtgaatcca
gctatttggtcctttattagggcttcgggggacagccaagaattacattt
taattcattatcttgttctggaaatgctactgaggcttctgcacaaattg
aaagcagcatttacacaacctaatacctatggtatcttttccaatttatc
ttgcgggcattatcacctcccacttgttccctccttggatgtttgacaat
gtagtctgatttctccttttataggatgataagctacttcaccctgaaga
agagcagtggaaaaatggccctacattaagagctagaatgggaacctgaa
tacatgttaaaagattggaaatagcctttaccactgtgcaagaatgagtc
tgtattactcagacaccccttctcctcttgctgagctgcaatac
gaattcattctttgttgagtctttgtgtggctttggtgttactgtgactg
tgacctcatagaatgagggtggtaatcttccttctatttgtatttttgtg
gaatattttgaggggtattgatattagttcttctttgaaagtattttgga
attctgcactaataccactggcactgtgtcttttgttttgttttgttttg
gttttggtttttggtttttccattgcaatatgtttaatgactgcttctct
ttccttgggggttacagaactattcagattgttaaactccttttatatat
tatttgcttatactttaggaaacttttcactagtagaatgttatatgaac
atataaaacattttatatgaacatatacatgtcttgtgtgttagttatcc
cctgtgctttgtcctctactttatcctcccacccctcaccccatctagcc
tttcattccattgttccccttctttcttttatcacagctttctatcttcc
ctcaactcaagccccaaatatagcccttttctaagtttctgatctctatg
ggtattccaaatgaaacacacacatctaacaattgaaagctaacatcaac
aaattaaaaaaaatatatatgacatttgtcttccaggatctatgtgagct
cactaagaatgttagcttccagtgttatccatttacctgtaaattcataa
ttttatttttctgaatatctgaatatcattgcattgtatatatgtcccac
attttttcatgtttaacagttaatggacatttagacagtttccatttctt
agctattgtgaataaagcagctataaacatggatgagacacctgctccta
tcttaggtgtgaatggttcccacagtttgtaccttagaatactggtcctc
agctggtggaactattgggaagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28961833_28962976
seq2: B6Ng01-129N07.b_52_1195 (reverse)

seq1  GTATTGCAGCTTCAGCAGAGGGAGAGAGGAGTGTCTGGAAGTAAAATCAT  50
      |||||||||| ||||||   ||||| ||| |||||||  ||||| |    
seq2  GTATTGCAGC-TCAGCAAGAGGAGA-AGGGGTGTCTG--AGTAATA----  42

seq1  GACACTATTTCTGCCACAGTGGTAAA-GCTATTTTCAAATCTTTTAACAT  99
       | |||  ||||  |||||||||||| |||| |||| |||||||||||||
seq2  CAGACTCATTCTTGCACAGTGGTAAAGGCTA-TTTCCAATCTTTTAACAT  91

seq1  GTATTTCAGGTACCATTTCTAGCTCTTTAATGTAGGGCCATTTTCTCCAC  149
      ||| ||||||| ||  ||||||||| |||||||||||||||||| |||||
seq2  GTA-TTCAGGTTCCCATTCTAGCTC-TTAATGTAGGGCCATTTT-TCCAC  138

seq1  TGCTC-TCTTCAGGGTG-AGTAGC-TATCATCCTATAAAAGGAGAATTCA  196
      ||||| ||||||||||| |||||| ||||||||||||||||||||| |||
seq2  TGCTCTTCTTCAGGGTGAAGTAGCTTATCATCCTATAAAAGGAGAAATCA  188

seq1  GACTACA-TGTCAAACATTCAAGGAGGCA--CAGTGGGAGGTGATAATGC  243
      ||||||| |||||||||| |||||||| |   ||||||||||||||||||
seq2  GACTACATTGTCAAACATCCAAGGAGGGAACAAGTGGGAGGTGATAATGC  238

seq1  CCGCAAGATAAATTGG-AAAGATACCATAGGTATTAGGTTGTGTAAATGC  292
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCGCAAGATAAATTGGAAAAGATACCATAGGTATTAGGTTGTGTAAATGC  288

seq1  TGCTTTCAATTTGTGCAGAAGCCTCAGTAGCATTTCCAGAACAAGATAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAATTTGTGCAGAAGCCTCAGTAGCATTTCCAGAACAAGATAAT  338

seq1  GAATT-AAATGTAATTCTTGGCTGTCCCCCGAAGCCCTAAT-AAGGACCA  390
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTAAAATGTAATTCTTGGCTGTCCCCCGAAGCCCTAATAAAGGACCA  388

seq1  AATAGCTGGATTCACAACGATTTGAAAC-TTATCCTGG-AAGCATTCCAT  438
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AATAGCTGGATTCACAACGATTTGAAACTTTATCCTGGAAAGCATTCCAT  438

seq1  GGGCACCTCATTCTCGTTCTATAATTGAGCCAAGACAAGCTTTAATGTAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTCATTCTCGTTCTATAATTGAGCCAAGACAAGCTTTAATGTAG  488

seq1  CGTAATTCCTACTTTCTCTATACTATTGGCAGGAGAGGCTGCCTAATTAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATTCCTACTTTCTCTATACTATTGGCAGGAGAGGCTGCCTAATTAC  538

seq1  AGAAAAACCTTCATATGTCTTTTTGCCTTCAAAGGATTTATTTCTTAAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCTTCATATGTCTTTTTGCCTTCAAAGGATTTATTTCTTAAGA  588

seq1  AGGATGGTGTTTATATTTTAACCAAAGAAAGAACCATTATATGTGTTCAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGTTTATATTTTAACCAAAGAAAGAACCATTATATGTGTTCAT  638

seq1  GTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAACCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTAACCA  688

seq1  AAGTATTAACCACAGCACATGAAACTGATTGATTGGTCATTTAGTTTTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAACCACAGCACATGAAACTGATTGATTGGTCATTTAGTTTTCT  738

seq1  AAGTTGGTTGTTAGAAAATTTAATTTTAATTAAAATATTTTACTTATTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGTTGTTAGAAAATTTAATTTTAATTAAAATATTTTACTTATTCA  788

seq1  ATAGTACCTCACCAAACACGCTCAGGTGCTTGGAAAGATATAAACTAATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCTCACCAAACACGCTCAGGTGCTTGGAAAGATATAAACTAATA  838

seq1  TAAAAGGTTGTGTTTATACTACATAGTGGGTTCAGGTCAGATTGGCCTGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTGTGTTTATACTACATAGTGGGTTCAGGTCAGATTGGCCTGG  888

seq1  AACTTGCAACTCTCCTGTCTCAGTGCCTTTTCCAAATGCTAAGATTTTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAACTCTCCTGTCTCAGTGCCTTTTCCAAATGCTAAGATTTTAG  938

seq1  GTATAAACCACCATATCCAGCTTCTGTGTCTTCTCTCAAAAAGCTCAAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACCACCATATCCAGCTTCTGTGTCTTCTCTCAAAAAGCTCAAAA  988

seq1  TAAATTTAGTTGGGAGGCAGATTGGGAAAGGATCTTTACCTATCCCAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGTTGGGAGGCAGATTGGGAAAGGATCTTTACCTATCCCAAAT  1038

seq1  CAGATAGGGGACTAATATCCAATATATTTAAAGAACTCAAGAAGGTGGAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGGGACTAATATCCAATATATTTAAAGAACTCAAGAAGGTGGAC  1088

seq1  TCCAGAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAA  1138

seq1  GAATTC  1144
      ||||||
seq2  GAATTC  1144

seq1: chr3_28842478_28843386
seq2: B6Ng01-129N07.g_69_974

seq1  GAATTCATTCTTTGTTGAGTCTTTGTGTGGCTTTGGTGTTACTGTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTGTTGAGTCTTTGTGTGGCTTTGGTGTTACTGTGACTG  50

seq1  TGACCTCATAGAATGAGGGTGGTAATCTTCCTTCTATTTGTATTTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATAGAATGAGGGTGGTAATCTTCCTTCTATTTGTATTTTTGTG  100

seq1  GAATATTTTGAGGGGTATTGATATTAGTTCTTCTTTGAAAGTATTTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTGAGGGGTATTGATATTAGTTCTTCTTTGAAAGTATTTTGGA  150

seq1  ATTCTGCACTAATACCACTGGCACTGTGTCTTTTGTTTTGTTTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACTAATACCACTGGCACTGTGTCTTTTGTTTTGTTTTGTTTTG  200

seq1  GTTTTGGTTTTTGGTTTTTCCATTGCAATATGTTTAATGACTGCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTTGGTTTTTCCATTGCAATATGTTTAATGACTGCTTCTCT  250

seq1  TTCCTTGGGGGTTACAGAACTATTCAGATTGTTAAACTCCTTTTATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGGGTTACAGAACTATTCAGATTGTTAAACTCCTTTTATATAT  300

seq1  TATTTGCTTATACTTTAGGAAACTTTTCACTAGTAGAATGTTATATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTATACTTTAGGAAACTTTTCACTAGTAGAATGTTATATGAAC  350

seq1  ATATAAAACATTTTATATGAACATATACATGTCTTGTGTGTTAGTTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACATTTTATATGAACATATACATGTCTTGTGTGTTAGTTATCC  400

seq1  CCTGTGCTTTGTCCTCTACTTTATCCTCCCACCCCTCACCCCATCTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTTTGTCCTCTACTTTATCCTCCCACCCCTCACCCCATCTAGCC  450

seq1  TTTCATTCCATTGTTCCCCTTCTTTCTTTTATCACAGCTTTCTATCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCATTGTTCCCCTTCTTTCTTTTATCACAGCTTTCTATCTTCC  500

seq1  CTCAACTCAAGCCCCAAATATAGCCCTTTTCTAAGTTTCTGATCTCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCAAGCCCCAAATATAGCCCTTTTCTAAGTTTCTGATCTCTATG  550

seq1  GGTATTCCAAATGAAACACACACATCTAACAATTGAAAGCTAACATCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCAAATGAAACACACACATCTAACAATTGAAAGCTAACATCAAC  600

seq1  AAATTAAAAAAAATATATATGACATTTGTCTTCCAGGATCTATGTGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAATATATATGACATTTGTCTTCCAGGATCTATGTGAGCT  650

seq1  CACTAAGAATGTTAGCTTCCAGTGTTATCCATTTACCTGTAAATTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGAATGTTAGCTTCCAGTGTTATCCATTTACCTGTAAATTCATAA  700

seq1  TTTCATTTTTCTGAATATCTGAATATCATTGCATTGTATATATGTCCCAC  750
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTCTGAATATCTGAATATCATTGCATTGTATATATGTCCCAC  750

seq1  ATTTTATACATGTTTAACAGTTAATGGACATTTAGACAGTTTCCATTTCT  800
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTT-TTCATGTTTAACAGTTAATGGACATTTAGACAGTTTCCATTTCT  799

seq1  TAGCTATTGTGAATAAAGCAGCTATAAACATGGATGAGACACCTGCT-CT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGCTATTGTGAATAAAGCAGCTATAAACATGGATGAGACACCTGCTCCT  849

seq1  ATCTTAGGGTGTGAATGGTTCCCACAGGTTTGTACCTTAGAATAACTGGT  899
      |||||| ||||||||||||||||||| |||||||||||||||| ||||||
seq2  ATCTTA-GGTGTGAATGGTTCCCACA-GTTTGTACCTTAGAAT-ACTGGT  896

seq1  CCTCAGCTGG  909
      ||||||||||
seq2  CCTCAGCTGG  906