BAC Information

Click to search

BAC

Clone NameB6Ng01-129O03
Chromosome3 (Build37)
Map Location 8,913,549 - 9,015,561
singlet/doubletdoublet
Overlap geneMrps28, Tpd52
Upstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504
Downstream geneLOC100041389, LOC667886, Zbtb10, Zfp704, Pag1, LOC621504, Fabp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O03.bB6Ng01-129O03.g
ACCDH931352DH931353
length1,1191,080
definitionDH931352|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O03, 5' end.DH931353|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,014,422 - 9,015,561)(8,913,549 - 8,914,648)
sequence
gaattctcagagatcctcctgcctctgcctcctgagtgctgggataaaag
gtgtgtgccaccatgcctgacctaaaattgctttataaaaatgagcaaac
tccatgttttcagttgtgttactttgtgtgtgtgtgtgtacatacacaca
catgtaaattgtataaaataatggctgcgttgtgacattttcattcaccc
acgtgatgaatcttggtcatatccattggccatcactctttcatttcctc
tctccctttcccgtagtccacttatttccatgtggtttccttctactttg
atgttcttttatagcttctgacaaggagactgccttgctggcaccctctt
gtgatgctgaaggtgcccatcgcttcactgtgagtgaggaaaactcaccc
ttgatctatctgttcaccactatgacatttcactcaccctgactctctct
cacaaaggagtgagacaggctgactccatggcaggcttcaaactagcaat
tcaggatcctaggcctaaatctctttcccaagaactgggcatgtctaggc
aaacctaggcaagtcagttacttaaaaaagaaaaaaatgctcagacttcg
ggcagctagtcagaaactgccctaccatcaaaagctgctcttccgcctgg
cttgaggcaagggcaatgggtcatcaacagtttccagagttccccagcaa
cagtttctagccccccataccccagtaatgtttctggaaggtccctagag
atggagtcaacagattaagaaaggggtcacctactcctgaattcccctaa
ttgctttaaatcagcctgtgaacttatttggtggtcttcattttagactg
agagacccccacatgttggacttctgcagaataaaatgctcttggctttc
acatgctagttgagtctggggtatcgttttttggtgactgtgaactctta
cagaggacacatggagacacttttctgtagtgtatgaagctaagcttctt
gttaagtctagattattgtattcagattttttttggtcttttctggtgtt
tgagaatgttgtctgctaatagccagtgggcctgaactggagggcgattc
ttgacctaagatctctctc
gaattcacatgcacactcctggatgtcagaggaggaagttgtctttctct
ctcactcttccattatgtttccttgagaaaaagtctgttgctaaacctag
aattcatagtctttcagctggactagctgaccagcaagctccagctgacc
tcccagctttgcccacctcagcactgaggcacacgcatgccctgctcaga
tcctcatgcttgcacaaccagagcacttaaccaatgcccctaagccccta
tattttagtgggaaggaggttatgtaggaattcaggaataatgacttcta
tttgtctatggagacatggttacagtccctcctaaatgatgaagcaatca
accaagagcagagagcaacattaagttaccaatacagtacctatgcctgc
cacctgctggaaggctgacacaaggcaccattctgtacattaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaggacattagcagtgtatagctgggaatgac
acttggaatatggacttgctaggcagtattctgtggtaaaaatataccat
ggtaactctttaatcattaactagttcttaaaaataaatatataggttgt
ctccaatgttaaaaataaagctgggctggagagctacatcttccaaaagc
tttgggttcaattccagaatccacaaccatctgtaacggcaggagaagtc
agctgtatctgtttgagtagtcagagctcacgcagtaggacatgtcagca
gagattcactgcccacactaccaacagtcaggctcaccatcctcaaaaag
aaggcaaaacccacactgactcagtccccaaagcctataaatcaggttct
gctcaatctgattagtttcttttatttctgttacttaacgctaatttttt
aaaagtgagaaggctataatcacagcctgaaaccatatgaacaaaatgaa
atttaatgtacacttagaggaaaaaacccaggacataaagaggtagcatt
atttctgagcaaacatgggtgctaataaagacttacaatccagaaactag
tccagctgaagtcgaatgggagctaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_9014422_9015561
seq2: B6Ng01-129O03.b_48_1166 (reverse)

seq1  GAGAGAGAAACTGAGGTCAAAGAATCG-CCTCAAGTTCAAGGCCAACCTG  49
      ||||||| | || ||||| |||||||| |||| ||||| ||||| ||   
seq2  GAGAGAG-ATCTTAGGTC-AAGAATCGCCCTCCAGTTC-AGGCCCAC--T  45

seq1  GGCTATATAGCAAGACCACA-TCTCAAAACACCAGAAAAAGACCAAAAAA  98
      |||||| |||| |||| ||| |||| ||||||||| ||||||||||||||
seq2  GGCTAT-TAGC-AGACAACATTCTC-AAACACCAG-AAAAGACCAAAAAA  91

seq1  AAATCCTGAATAACAATAATTCTAGACTTTTAAACAAGAAGCTTAGCTTC  148
      ||   |||||| ||||||| |||||||||   ||||||||||||||||||
seq2  AA--TCTGAAT-ACAATAA-TCTAGACTT---AACAAGAAGCTTAGCTTC  134

seq1  AATACACTACAGAAAAGTGGTTCTCCATGTGTCCTCTTGTAAGAGTTCAC  198
       ||||||||||||||||||  ||||||||||||||| |||||||||||||
seq2  -ATACACTACAGAAAAGTG--TCTCCATGTGTCCTC-TGTAAGAGTTCAC  180

seq1  AGTTCACCAAAAAACGATACCCCAGACTCAACTAGCATGTGAAAGCCAAG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TCACCAAAAAACGATACCCCAGACTCAACTAGCATGTGAAAGCCAAG  229

seq1  AGCATTTTATTCTGCAGAAGTCCAACATGTGGGGGGTCTCTCAGTCTAAA  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCATTTTATTCTGCAGAAGTCCAACATGT-GGGGGTCTCTCAGTCTAAA  278

seq1  ATGAAGACCACCAAATAAGTTCACAGGCCTGATTTAAAGCAATTAGGGGA  348
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGAAGACCACCAAATAAGTTCACAGG-CTGATTTAAAGCAATTAGGGGA  327

seq1  ATTCAGGAGTAGGTGACCCCTTTCTTAATCTGTTGACTCCATCTCTAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAGTAGGTGACCCCTTTCTTAATCTGTTGACTCCATCTCTAGGG  377

seq1  ACCTTCCAGAAACATTACTGGGGTATGGGGGGCTAGAAACTGTTGCTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAGAAACATTACTGGGGTATGGGGGGCTAGAAACTGTTGCTGGG  427

seq1  GAACTCTGGAAACTGTTGATGACCCATTGCCCTTGCCTCAAGCCAGGCGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGAAACTGTTGATGACCCATTGCCCTTGCCTCAAGCCAGGCGG  477

seq1  AAGAGCAGCTTTTGATGGTAGGGCAGTTTCTGACTAGCTGCCCGAAGTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCTTTTGATGGTAGGGCAGTTTCTGACTAGCTGCCCGAAGTCT  527

seq1  GAGCATTTTTTTCTTTTTTAAGTAACTGACTTGCCTAGGTTTGCCTAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTTTTCTTTTTTAAGTAACTGACTTGCCTAGGTTTGCCTAGAC  577

seq1  ATGCCCAGTTCTTGGGAAAGAGATTTAGGCCTAGGATCCTGAATTGCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGTTCTTGGGAAAGAGATTTAGGCCTAGGATCCTGAATTGCTAG  627

seq1  TTTGAAGCCTGCCATGGAGTCAGCCTGTCTCACTCCTTTGTGAGAGAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCCTGCCATGGAGTCAGCCTGTCTCACTCCTTTGTGAGAGAGAG  677

seq1  TCAGGGTGAGTGAAATGTCATAGTGGTGAACAGATAGATCAAGGGTGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGAGTGAAATGTCATAGTGGTGAACAGATAGATCAAGGGTGAGT  727

seq1  TTTCCTCACTCACAGTGAAGCGATGGGCACCTTCAGCATCACAAGAGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCACTCACAGTGAAGCGATGGGCACCTTCAGCATCACAAGAGGGT  777

seq1  GCCAGCAAGGCAGTCTCCTTGTCAGAAGCTATAAAAGAACATCAAAGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAAGGCAGTCTCCTTGTCAGAAGCTATAAAAGAACATCAAAGTAG  827

seq1  AAGGAAACCACATGGAAATAAGTGGACTACGGGAAAGGGAGAGAGGAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCACATGGAAATAAGTGGACTACGGGAAAGGGAGAGAGGAAAT  877

seq1  GAAAGAGTGATGGCCAATGGATATGACCAAGATTCATCACGTGGGTGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTGATGGCCAATGGATATGACCAAGATTCATCACGTGGGTGAAT  927

seq1  GAAAATGTCACAACGCAGCCATTATTTTATACAATTTACATGTGTGTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCACAACGCAGCCATTATTTTATACAATTTACATGTGTGTGTA  977

seq1  TGTACACACACACACACAAAGTAACACAACTGAAAACATGGAGTTTGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACACACACACAAAGTAACACAACTGAAAACATGGAGTTTGCTC  1027

seq1  ATTTTTATAAAGCAATTTTAGGTCAGGCATGGTGGCACACACCTTTTATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATAAAGCAATTTTAGGTCAGGCATGGTGGCACACACCTTTTATC  1077

seq1  CCAGCACTCAGGAGGCAGAGGCAGGAGGATCTCTGAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCAGGAGGCAGAGGCAGGAGGATCTCTGAGAATTC  1119

seq1: chr3_8913549_8914648
seq2: B6Ng01-129O03.g_70_1149

seq1  GAATTCACATGCACACTCCTGGATGTCAGAGGAGGAAGTTGTCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCACACTCCTGGATGTCAGAGGAGGAAGTTGTCTTTCTCT  50

seq1  CTCACTCTTCCATTATGTTTCCTTGAGAAAAAGTCTGTTGCTAAACCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTCCATTATGTTTCCTTGAGAAAAAGTCTGTTGCTAAACCTAG  100

seq1  AATTCATAGTCTTTCAGCTGGACTAGCTGACCAGCAAGCTCCAGCTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAGTCTTTCAGCTGGACTAGCTGACCAGCAAGCTCCAGCTGACC  150

seq1  TCCCAGCTTTGCCCACCTCAGCACTGAGGCACACGCATGCCCTGCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTTTGCCCACCTCAGCACTGAGGCACACGCATGCCCTGCTCAGA  200

seq1  TCCTCATGCTTGCACAACCAGAGCACTTAACCAATGCCCCTAAGCCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGCTTGCACAACCAGAGCACTTAACCAATGCCCCTAAGCCCCTA  250

seq1  TATTTTAGTGGGAAGGAGGTTATGTAGGAATTCAGGAATAATGACTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTGGGAAGGAGGTTATGTAGGAATTCAGGAATAATGACTTCTA  300

seq1  TTTGTCTATGGAGACATGGTTACAGTCCCTCCTAAATGATGAAGCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTATGGAGACATGGTTACAGTCCCTCCTAAATGATGAAGCAATCA  350

seq1  ACCAAGAGCAGAGAGCAACATTAAGTTACCAATACAGTACCTATGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCAGAGAGCAACATTAAGTTACCAATACAGTACCTATGCCTGC  400

seq1  CACCTGCTGGAAGGCTGACACAAGGCACCATTCTGTACATTAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGGAAGGCTGACACAAGGCACCATTCTGTACATTAAAAAAAAA  450

seq1  AAAAAAAAAAAAAAAAAAAAGGACATTAGCAGTGTATAGCTGGGAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAGGACATTAGCAGTGTATAGCTGGGAATGAC  500

seq1  ACTTGGAATATGGACTTGCTAGGCAGTATTCTGTGGTAAAAATATACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATATGGACTTGCTAGGCAGTATTCTGTGGTAAAAATATACCAT  550

seq1  GGTAACTCTTTAATCATTAACTAGTTCTTAAAAATAAATATATAGGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTCTTTAATCATTAACTAGTTCTTAAAAATAAATATATAGGTTGT  600

seq1  CTCCAATGTTAAAAATAAAGCTGGGCTGGAGAGCTACATCTTCCAAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGTTAAAAATAAAGCTGGGCTGGAGAGCTACATCTTCCAAAAGC  650

seq1  TTTGGGTTCAATTCCAGAATCCACAACCATCTGTAACGGCAGGAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCAATTCCAGAATCCACAACCATCTGTAACGGCAGGAGAAGTC  700

seq1  AGCTGTATCTGTTTGAGTAGTCAGAGCTCAGGCAGTAGGACATGTCAGCA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTGTATCTGTTTGAGTAGTCAGAGCTCACGCAGTAGGACATGTCAGCA  750

seq1  GAGACTCACTGCCCACACTACCAACAGTCAGGCTCACCATCCTCAAAAAG  800
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCACTGCCCACACTACCAACAGTCAGGCTCACCATCCTCAAAAAG  800

seq1  AAGGCAAAACCCACACTGACTCAGTCCCCAAAGCCTATAAATCAGGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAACCCACACTGACTCAGTCCCCAAAGCCTATAAATCAGGTTCT  850

seq1  GCTCAAATCTGATTAGTTTCTTTTATTTCCTGTTACTTAACGCTAATTTT  900
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTC-AATCTGATTAGTTTCTTTTATTT-CTGTTACTTAACGCTAATTTT  898

seq1  TTAAAAAGTGAGAAGGCTATAATCACAGCCTGAAAACAATATGAACAAAA  950
      || ||||||||||||||||||||||||||||| |||| ||||||||  ||
seq2  TT-AAAAGTGAGAAGGCTATAATCACAGCCTG-AAACCATATGAAC--AA  944

seq1  AATGAAATTTTAATGTAACACTTAGAAGGAAAAAAACCCAAAGACATTAA  1000
      ||||||| |||||||| |||||||| |||||||||  || | |||||  |
seq2  AATGAAA-TTTAATGT-ACACTTAG-AGGAAAAAA--CCCAGGACAT--A  987

seq1  AAGAAGGTAGCAATTATTTCTGAGCAAAACATGGGTGCTAATAAAGACCT  1050
      ||| ||||||| ||||||||||||| |||||||||||||||||||||| |
seq2  AAG-AGGTAGC-ATTATTTCTGAGC-AAACATGGGTGCTAATAAAGACTT  1034

seq1  ACAATCAGAGAAACTAAGTCCAAGCTGAAAGTCGAAATGGAGCTAAATGG  1100
      ||||||  ||||||| ||||| ||||| ||||||||  ||||||||||||
seq2  ACAATC-CAGAAACT-AGTCC-AGCTG-AAGTCGAATGGGAGCTAAATGG  1080