BAC Information

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BAC

Clone NameB6Ng01-130O09
Chromosome3 (Build37)
Map Location 144,883,822 - 145,061,329
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O09.bB6Ng01-130O09.g
ACCDH932094DH932095
length1,185773
definitionDH932094|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O09, 5' end.DH932095|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,883,822 - 144,885,011)(145,060,671 - 145,061,329)
sequence
gaattcataaaatgagaaagatctcattcctctttgaatcccaggtaccc
ggctttgtgctttgcatgagttaagctctcgatggctgttttgtttatga
tgaaggctttgctgtctggattccaatggaaggacatcagagaggcagga
aatgatttatatgttccttgccagaagccaaccttattgagattcaggcg
gaatttctatgtctctctttagttcatgatgtatatcttcttttcaacag
tgagttctgatgctgtctttgacaatggccttccatgtacattacagaat
gtcaaagtctttcattgaagaaaccttcttgagctggatcatgaacttcc
ttatgagcaaaacccagagacatcttttctcgagactgtcttcacccatt
tgttagccacactctgttgtccaaacccagacaagaagcactgaacagaa
aatgatttctgataaaatagccacataaagaataaatatgaagtagattg
tgtcatataaagaggctaatcatgatgaatggtccgtgtatgctcggatg
tgcctgggtgcctaccagtgtccagccttcacctggactgaataatgtca
catctgcttgtgactctgaacagttactttcaattctccaacccctcaca
atcttcttttctggcatcagagctttcacaggcctatcactcacattcac
taatatgtcactttcatgtgactttatgttactcgcattcactaatatgt
cgttttcatgtgactctttcactcacattcactaataagtcattgtcatg
tgactctataatgtatttattttctgtaaataggcttcagcacaccaccc
aacttatacctataattttataggtcccttaatggctaagctagaaatag
gattgtaatatgggtccagaattgacaactgctgctttcaagttaaaata
tccctcagtatttatagatactggtgtttctgtctaatttcacatagttc
gactttgcatttgttctttactcctcctcactcaccttcccatttttatc
ctccaaaaccatttctagacctccccccaatgccacctcctcctaaaaga
tcgcgctttatggcacggtctccacttagcacctttgattccacctgaca
tctctctagcgcccttcttttacctagtccacacc
gaattcatcagggacaagccatacaacatctttctatagctcttcctctt
caagtaagaaatggaaaatggctgcttagcttcagggtgcatccttgcga
gaatgtgacatgaatattatcactcaggaaactatagcactcaggctagt
aaaacaacttttaacgggctttccctgtttttgaaaggaaaagatgcatt
agggaatggaaatgaaaatattctattttatgttaggctaacacatcgat
gcgtttatgacatattcactttaatttccctcaaggaaacatttgtttct
actcttgaccttgcggtttgaggttaaacatctccaaccctgaatataat
ggtagatgtgaaacagagactgaatttcgtcaacttgttcaatatctgta
gggatagtgattggtttagcagtgagcaaaggacagacttccctccccca
atttccaacttgagtggaactatggagtaagcagaagtgccagtaaaaat
gctcagataaagtaaaagacaccgcgtgtcgcttggaacattaatgtcgt
taaaatgcccagggtacagaccgagaccagcacattcaactgtaaaactc
cagagttgtctgctgtagaaatgtgaaaaaggcctaaaactcatgcagac
ccacaaaggatcccaaaagtacaaagtcttgccaagaaacatgaagctgg
agttgtcatgcttgctggccttaaaacatatcacacgccaggcgtggtgc
gcacactttgaatcccagcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144883822_144885011
seq2: B6Ng01-130O09.b_42_1226

seq1  GAATTCATAAAATGAGAAAGATCTCATTCATCTTTGAATCCCAGGTACCC  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCATAAAATGAGAAAGATCTCATTCCTCTTTGAATCCCAGGTACCC  50

seq1  GGCTTTGTGCTTTGCATGAGTTAAGCTCTCGATGGCTGTTTTGTTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTGCTTTGCATGAGTTAAGCTCTCGATGGCTGTTTTGTTTATGA  100

seq1  TGAAGGCTTTGCTGTCTGGATTCCAATGGAAGGACATCAGAGAGGCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTTGCTGTCTGGATTCCAATGGAAGGACATCAGAGAGGCAGGA  150

seq1  AATGATTTATATGTTCCTTGCCAGAAGCCAACCTTATTGAGATTCAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTATATGTTCCTTGCCAGAAGCCAACCTTATTGAGATTCAGGCG  200

seq1  GAATTTCTATGTCTCTCTTTAGTTCATGATGTATATCTTCTTTTCAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTATGTCTCTCTTTAGTTCATGATGTATATCTTCTTTTCAACAG  250

seq1  TGAGTTCTGATGCTGTCTTTGACAATGGCCTTCCATGTACATTACAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGATGCTGTCTTTGACAATGGCCTTCCATGTACATTACAGAAT  300

seq1  GTCAAAGTCTTTCATTGAAGAAACCTTCTTGAGCTGGATCATGAACTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTCTTTCATTGAAGAAACCTTCTTGAGCTGGATCATGAACTTCC  350

seq1  TTATGAGCAAAACCCAGAGACATCTTTTCTCGAGACTGTCTTCACCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAAAACCCAGAGACATCTTTTCTCGAGACTGTCTTCACCCATT  400

seq1  TGTTAGCCACACTCTGTTGTCCAAACCCAGACAAGAAGCACTGAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCACACTCTGTTGTCCAAACCCAGACAAGAAGCACTGAACAGAA  450

seq1  AATGATTTCTGATAAAATAGCCACATAAAGAATAAATATGAAGTAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTCTGATAAAATAGCCACATAAAGAATAAATATGAAGTAGATTG  500

seq1  TGTCATATAAAGAGGCTAATCATGATGAATGGTCCGTGTATGCTCGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATAAAGAGGCTAATCATGATGAATGGTCCGTGTATGCTCGGATG  550

seq1  TGCCTGGGTGCCTACCAGTGTCCAGCCTTCACCTGGACTGAATAATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTGCCTACCAGTGTCCAGCCTTCACCTGGACTGAATAATGTCA  600

seq1  CATCTGCTTGTGACTCTGAACAGTTACTTTCAATTCTCCAACCCCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTGTGACTCTGAACAGTTACTTTCAATTCTCCAACCCCTCACA  650

seq1  ATCTTCTTTTCTGGCATCAGAGCTTTCACAGGCCTATCACTCACATTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTTCTGGCATCAGAGCTTTCACAGGCCTATCACTCACATTCAC  700

seq1  TAATATGTCACTTTCATGTGACTTTATGTTACTCGCATTCACTAATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTCACTTTCATGTGACTTTATGTTACTCGCATTCACTAATATGT  750

seq1  CGTTTTCATGTGACTCTTTCACTCACATTCACTAATAAGTCATTGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCATGTGACTCTTTCACTCACATTCACTAATAAGTCATTGTCATG  800

seq1  TGACTCTATAATGTATTTATTTTCTGTAAATAGGCTTCAGCACACCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTATAATGTATTTATTTTCTGTAAATAGGCTTCAGCACACCACCC  850

seq1  AACTTATTACCTATAATTTTTATAGGTCCCTTAATGGCTAAGCTAGAAAT  900
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  AACTTA-TACCTATAA-TTTTATAGGTCCCTTAATGGCTAAGCTAGAAAT  898

seq1  AGGATTGTAATATGGGTCCAGAATTGACAACTGCTGCTTTCAAGTTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTAATATGGGTCCAGAATTGACAACTGCTGCTTTCAAGTTAAAA  948

seq1  TAT-CCTCAGTATTTATAGATACTTGGTGTTTCTGTTCTATTTTCACATA  999
      ||| ||||||||||||||||||| ||||||||||| |||| |||||||||
seq2  TATCCCTCAGTATTTATAGATAC-TGGTGTTTCTG-TCTAATTTCACATA  996

seq1  GTTCGACTTTTGCATTTGTTCTTTACT-CTCTTCACTTCACTTTCCCATT  1048
      ||||||| ||||||||||||||||||| ||| |||| |||| ||||||||
seq2  GTTCGAC-TTTGCATTTGTTCTTTACTCCTCCTCAC-TCACCTTCCCATT  1044

seq1  TTTATCCT-CAAAACTA-TTCTAGAACTTCCCTCCAATGCCACCT-CTCC  1095
      |||||||| |||||| | |||||| || |||| |||||||||||| ||||
seq2  TTTATCCTCCAAAACCATTTCTAG-ACCTCCCCCCAATGCCACCTCCTCC  1093

seq1  TAAAAGATCGC-CTTAAGGGCACAGTTCTCACTTAAGCACTTTTGAATTT  1144
      ||||||||||| ||| | ||||| ||   ||||| ||||| |||||  ||
seq2  TAAAAGATCGCGCTTTATGGCACGGTCTCCACTT-AGCACCTTTGA--TT  1140

seq1  CAACTTGACATTCTTCCTAGACGCCCTTCTTTTACTTAGTCC-CACC  1190
      | || ||||| |||  |||| |||||||||||||| |||||| ||||
seq2  CCACCTGACA-TCTCTCTAG-CGCCCTTCTTTTACCTAGTCCACACC  1185

seq1: chr3_145060671_145061329
seq2: B6Ng01-130O09.g_70_728 (reverse)

seq1  CCTTTGTGGGTCTGCATGAGTTTTAGGCCTTTTTCACATTTCTACAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGGGTCTGCATGAGTTTTAGGCCTTTTTCACATTTCTACAGCAG  50

seq1  ACAACTCTGGAGTTTTACAGTTGAATGTGCTGGTCTCGGTCTGTACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTGGAGTTTTACAGTTGAATGTGCTGGTCTCGGTCTGTACCCTG  100

seq1  GGCATTTTAACGACATTAATGTTCCAAGCGACACGCGGTGTCTTTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTAACGACATTAATGTTCCAAGCGACACGCGGTGTCTTTTACTT  150

seq1  TATCTGAGCATTTTTACTGGCACTTCTGCTTACTCCATAGTTCCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGCATTTTTACTGGCACTTCTGCTTACTCCATAGTTCCACTCAA  200

seq1  GTTGGAAATTGGGGGAGGGAAGTCTGTCCTTTGCTCACTGCTAAACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAATTGGGGGAGGGAAGTCTGTCCTTTGCTCACTGCTAAACCAAT  250

seq1  CACTATCCCTACAGATATTGAACAAGTTGACGAAATTCAGTCTCTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCCCTACAGATATTGAACAAGTTGACGAAATTCAGTCTCTGTTTC  300

seq1  ACATCTACCATTATATTCAGGGTTGGAGATGTTTAACCTCAAACCGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACCATTATATTCAGGGTTGGAGATGTTTAACCTCAAACCGCAAG  350

seq1  GTCAAGAGTAGAAACAAATGTTTCCTTGAGGGAAATTAAAGTGAATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGTAGAAACAAATGTTTCCTTGAGGGAAATTAAAGTGAATATGT  400

seq1  CATAAACGCATCGATGTGTTAGCCTAACATAAAATAGAATATTTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACGCATCGATGTGTTAGCCTAACATAAAATAGAATATTTTCATTT  450

seq1  CCATTCCCTAATGCATCTTTTCCTTTCAAAAACAGGGAAAGCCCGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTAATGCATCTTTTCCTTTCAAAAACAGGGAAAGCCCGTTAAA  500

seq1  AGTTGTTTTACTAGCCTGAGTGCTATAGTTTCCTGAGTGATAATATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTTACTAGCCTGAGTGCTATAGTTTCCTGAGTGATAATATTCAT  550

seq1  GTCACATTCTCGCAAGGATGCACCCTGAAGCTAAGCAGCCATTTTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCTCGCAAGGATGCACCCTGAAGCTAAGCAGCCATTTTCCATT  600

seq1  TCTTACTTGAAGAGGAAGAGCTATAGAAAGATGTTGTATGGCTTGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTGAAGAGGAAGAGCTATAGAAAGATGTTGTATGGCTTGTCCCT  650

seq1  GATGAATTC  659
      |||||||||
seq2  GATGAATTC  659