BAC Information

Click to search

BAC

Clone NameB6Ng01-132B16
Chromosome3 (Build37)
Map Location 149,568,612 - 149,677,313
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132B16.bB6Ng01-132B16.g
ACCDH932993DH932994
length2411,089
definitionDH932993|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B16, 5' end.DH932994|Mus musculus domesticus DNA, BAC clone: B6Ng01-132B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,568,612 - 149,568,852)(149,676,206 - 149,677,313)
sequence
gaattcctcttctctgctatatgcatggtctctaggacacaatcaaacta
tattatacaatgtaatgcattggagtattaacccttaattataaagaaac
aaatgacaaatactatattaaagaaagttaaatgttagagtttaaaaata
catactccctggcccattggacttgcaaactttatatgcctcagtacagg
ggaacgccagggccaagaagtgggagtgggggggtagggaa
gaattcacacacacaagcccatcacagttagatcaactttaggtcctctg
ggtgtggtattgaagtttcacgttctttctttgctggctgttggagaaag
tcattcttttttgggctgctgtttcctcatctcaatggactccacgcacc
tgaaaaaaagagttgctaaggctgtcaaggttatgcaagtaagaaattca
caagggtcatgcttagaatatcatcaacataggagaagtctgttgtcatt
tttccccaatgaggcacaagacacaattagaatatacatatatttttaac
actatttgctgttctttgatttacattgtgagtaaatttttctgcatcat
tcatgcttatttctgtacatttatgggcattttgaagtttatggaatgta
tataagaatgagcagactgtttccttcctgggttaaatatatccttttat
tctataatatatttatttgataccaaagggtagtataaagtttccttagg
aaagaacatttatggatcccttcttttccactccaaagactcttgactac
tttggaaatgtgtaagtcttattgcttcctatctttagctccctatatct
gctttgcagtggtcaaattcagtgtaagatgaagagttccttctcatcta
tattttgggttatcttaagagaaacttttatttcctagatattgaaatat
agaaaaaaggaaaataactttcaaagtaaacttggatttagtggcagtaa
ttaaatatttcagacaatgcaattttagttgccaagaatttagttttgcc
aataactcttcaaaactttttagatgttccatttattttaaaattcaagt
taaataaaattatatttggtagaatgtaaagtggaaaaatggctaaacac
cctaacataaagacctgtatcactgagttctttcattcattcatattttt
gaataggctgaggcacatattttaaatcttactatgcattatagcaggaa
gtaggctatggtaacatgtcttgaagaatgactcaggtaatcttttctgt
ttcaattttttgaattcatcatgtttttccaagagggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149568612_149568852
seq2: B6Ng01-132B16.b_43_283

seq1  GAATTCCTCTTCTCTGCTATATGCATGGTCTCTAGGACACAATCAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTCTGCTATATGCATGGTCTCTAGGACACAATCAAACTA  50

seq1  TATTATACAATGTAATGCATTGGAGTATTAACCCTTAATTATAAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACAATGTAATGCATTGGAGTATTAACCCTTAATTATAAAGAAAC  100

seq1  AAATGACAAATACTATATTAAAGAAAGTTAAATGTTAGAGTTTAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAATACTATATTAAAGAAAGTTAAATGTTAGAGTTTAAAAATA  150

seq1  CATACTCCCTGGCCCATTGGACTTGCAAACTTTATATGCCTCAGTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCCTGGCCCATTGGACTTGCAAACTTTATATGCCTCAGTACAGG  200

seq1  GGAACGCCAGGGCCAAGAAGTGGGAGTGGGGGGGTAGGGAA  241
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGCCAGGGCCAAGAAGTGGGAGTGGGGGGGTAGGGAA  241

seq1: chr3_149676206_149677313
seq2: B6Ng01-132B16.g_68_1156 (reverse)

seq1  GACCCTC-TGGGAAAACATGATGATATCAGAAAAATTGAAAGACAGAAAA  49
      ||||||| ||| ||||||||||||  ||| ||||||||||  ||||||||
seq2  GACCCTCTTGGAAAAACATGATGAATTCA-AAAAATTGAA--ACAGAAAA  47

seq1  AGAATTACCTGGGTCATGTCTCAAAGACATGTTTACCATAGCCTAACTTC  99
         |||||||| ||||| |||  |||||||| |||||||||||| |||||
seq2  --GATTACCTGAGTCAT-TCTTCAAGACATG-TTACCATAGCCT-ACTTC  92

seq1  CTTGCTAATAATGCATTAGGTAAGATTTAAAATTATTGTGCCTCAAGCCT  149
      | |||| |||||||||   ||||||||||||||   |||||||| |||||
seq2  C-TGCT-ATAATGCAT--AGTAAGATTTAAAAT--ATGTGCCTC-AGCCT  135

seq1  ATTTCAAAAATATGAATGAATGAAAGAACTCAGTGATACAGGTCTTTTAT  199
      | |||||||||||||||||||||||||||||||||||||||||||||   
seq2  A-TTCAAAAATATGAATGAATGAAAGAACTCAGTGATACAGGTCTTT--A  182

seq1  TGTTAGGGTGTTTTAGCCATTTTTCCACTTTACATTCTACCAAATATAAT  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGTG-TTTAGCCATTTTTCCACTTTACATTCTACCAAATATAAT  231

seq1  TTTATTTAACTTGAATTTTTAAAATAAATGGAACATCTAAAAAGTTTTGA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTATTTAACTTGAA-TTTTAAAATAAATGGAACATCTAAAAAGTTTTGA  280

seq1  AGAGTTATTGGCAAAACTAAATTCTTGGCAACTAAAATTGCATTGTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTGGCAAAACTAAATTCTTGGCAACTAAAATTGCATTGTCTGA  330

seq1  AATATTTAATTACTGCCACTAAATCCAAGTTTACTTTGAAAGTTATTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATTACTGCCACTAAATCCAAGTTTACTTTGAAAGTTATTTTC  380

seq1  CTTTTTTCTATATTTCAATATCTAGGAAATAAAAGTTTCTCTTAAGATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTATATTTCAATATCTAGGAAATAAAAGTTTCTCTTAAGATAA  430

seq1  CCCAAAATATAGATGAGAAGGAACTCTTCATCTTACACTGAATTTGACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATATAGATGAGAAGGAACTCTTCATCTTACACTGAATTTGACCA  480

seq1  CTGCAAAGCAGATATAGGGAGCTAAAGATAGGAAGCAATAAGACTTACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGCAGATATAGGGAGCTAAAGATAGGAAGCAATAAGACTTACAC  530

seq1  ATTTCCAAAGTAGTCAAGAGTCTTTGGAGTGGAAAAGAAGGGATCCATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAGTAGTCAAGAGTCTTTGGAGTGGAAAAGAAGGGATCCATAA  580

seq1  ATGTTCTTTCCTAAGGAAACTTTATACTACCCTTTGGTATCAAATAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTCCTAAGGAAACTTTATACTACCCTTTGGTATCAAATAAATA  630

seq1  TATTATAGAATAAAAGGATATATTTAACCCAGGAAGGAAACAGTCTGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGAATAAAAGGATATATTTAACCCAGGAAGGAAACAGTCTGCTC  680

seq1  ATTCTTATATACATTCCATAAACTTCAAAATGCCCATAAATGTACAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATATACATTCCATAAACTTCAAAATGCCCATAAATGTACAGAAA  730

seq1  TAAGCATGAATGATGCAGAAAAATTTACTCACAATGTAAATCAAAGAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGAATGATGCAGAAAAATTTACTCACAATGTAAATCAAAGAACA  780

seq1  GCAAATAGTGTTAAAAATATATGTATATTCTAATTGTGTCTTGTGCCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGTGTTAAAAATATATGTATATTCTAATTGTGTCTTGTGCCTCA  830

seq1  TTGGGGAAAAATGACAACAGACTTCTCCTATGTTGATGATATTCTAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAAAATGACAACAGACTTCTCCTATGTTGATGATATTCTAAGCA  880

seq1  TGACCCTTGTGAATTTCTTACTTGCATAACCTTGACAGCCTTAGCAACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTGTGAATTTCTTACTTGCATAACCTTGACAGCCTTAGCAACTC  930

seq1  TTTTTTTCAGGTGCGTGGAGTCCATTGAGATGAGGAAACAGCAGCCCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGGTGCGTGGAGTCCATTGAGATGAGGAAACAGCAGCCCAAA  980

seq1  AAAGAATGACTTTCTCCAACAGCCAGCAAAGAAAGAACGTGAAACTTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGACTTTCTCCAACAGCCAGCAAAGAAAGAACGTGAAACTTCAA  1030

seq1  TACCACACCCAGAGGACCTAAAGTTGATCTAACTGTGATGGGCTTGTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCCAGAGGACCTAAAGTTGATCTAACTGTGATGGGCTTGTGTG  1080

seq1  TGTGAATTC  1108
      |||||||||
seq2  TGTGAATTC  1089