BAC Information

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BAC

Clone NameB6Ng01-132E23
Chromosome3 (Build37)
Map Location 41,059,032 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132E23.b
ACCDH933146
length896
definitionDH933146|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E23, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgaaccccatttttaatggggttatttgaatt
tctggaatacaccttcttgagctctttgtatatattggatattagtcccc
tatgagatttaggattggtaaaaattctttcccaatctgttggtggcctt
tttgtcttattgatggtatcttttgccctaaagaagctttgcaatttcat
gaggtcccatttgtcaattcttgatcttacaacacaggccattgctgttc
tgtttaggaatttttcccctgtgcccatatcttcgagggttttccccatt
ttctcctctataaatttcagtgtctctggttttatgtggagttctttgat
ccacttagacttgacctttgtacaaggagaaaaggatggatcaattcgta
ttcttctacatgataactgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaggtg
accataggtgtgtgggttcatttctttgtcttcatttctattccattgat
ctacctgtctgtcgctgtaccagtactatgcagtttttatcacaattgct
ctgtagtacagcttgaggtcaggcatggtgattccaccagaggttctttt
attgttgaaaatagtgtttgctatcctaggtttttttgatattccagatg
aatttgcaaattgccctctctaactcagtgaaaaattgagttggaattat
gatggggattgccttgaatctatatattgctttttggcaggatacccatt
tttactatattaatcctgccaatccatgagcacaggagatctttccatca
tctgagatcttcttcaatttctttcttcagagacttgaagttcatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059032_41059737
seq2: B6Ng01-132E23.b_50_756 (reverse)

seq1  TGCAAATTCATCTGGAATAAC-AAAAAACCTAGGATAGCAAAAACTCTTC  49
      ||||||||||||||||||| | |||||||||||||||||||| ||| || 
seq2  TGCAAATTCATCTGGAATATCAAAAAAACCTAGGATAGCAAACACTATTT  50

seq1  TCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTT  99
      ||||  |||| |||||||||||||||||||||||||||||||| ||||| 
seq2  TCAACAATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTCAAGCTG  100

seq1  TACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAG  149
      ||||||||||||||||||||||||||||||| ||||||||| || |||||
seq2  TACTACAGAGCAATTGTGATAAAAACTGCATAGTACTGGTACAGCGACAG  150

seq1  ACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACA  199
      ||| | ||| ||||||||||||| |||||||  ||||| ||| |||||||
seq2  ACAGGTAGATCAATGGAATAGAAATGAAGACAAAGAAATGAACCCACACA  200

seq1  CCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAA  249
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  CCTATGGTCACCTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAA  250

seq1  AAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATG  299
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  AAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGTTATCATG  300

seq1  TAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAAT  349
      ||||||||| ||||||||||||  | | ||||||||||| |||||||| |
seq2  TAGAAGAATACGAATTGATCCATCCTTTTCTCCTTGTACAAAGGTCAAGT  350

seq1  CTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATA  399
      ||||||||||||| |||| ||||||||||||||||||||||||| |||||
seq2  CTAAGTGGATCAAAGAACTCCACATAAAACCAGAGACACTGAAATTTATA  400

seq1  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATT  449
      ||||||||| ||||||||| ||| |||||||||| |||||||||||||||
seq2  GAGGAGAAAATGGGGAAAACCCTCGAAGATATGGGCACAGGGGAAAAATT  450

seq1  CCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAAT  499
      |||  | |||||||||||||| |||| ||||||||  ||||| |||||||
seq2  CCTAAACAGAACAGCAATGGCCTGTGTTGTAAGATCAAGAATTGACAAAT  500

seq1  GGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAAT  549
      |||||||||||||| ||||||||||||  | ||||||||| ||| |||||
seq2  GGGACCTCATGAAATTGCAAAGCTTCTTTAGGGCAAAAGATACCATCAAT  550

seq1  AAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAA  598
      |||||||||||| ||||||||||||||||||| || |||||| |||||||
seq2  AAGACAAAAAGGCCACCAACAGATTGGGAAAGAATTTTTACCAATCCTAA  600

seq1  ATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGG  648
      |||  |||||||||||||||||||||||||  |||| |||||||||||| 
seq2  ATCTCATAGGGGACTAATATCCAATATATACAAAGAGCTCAAGAAGGTGT  650

seq1  ATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAAC  698
      |||||||||| ||||||||||||||| |||||||||| ||||||||||||
seq2  ATTCCAGAAATTCAAATAACCCCATT-AAAAATGGGGTTCAGAGCTAAAC  699

seq1  AAAGAATT  706
      ||||||||
seq2  AAAGAATT  707