BAC Information

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BAC

Clone NameB6Ng01-132O17
Chromosome3 (Build37)
Map Location 131,725,812 - 131,857,080
singlet/doubletdoublet
Overlap geneDkk2
Upstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132O17.bB6Ng01-132O17.g
ACCDH933603DH933604
length1,1251,061
definitionDH933603|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O17, 5' end.DH933604|Mus musculus domesticus DNA, BAC clone: B6Ng01-132O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,725,812 - 131,726,949)(131,855,993 - 131,857,080)
sequence
gaattcaccagcttgcttctaatatgcaatgtagtctgtactgaagattt
ctatctcagtggctctttcatggtattcccttgtttgggtgagatttgct
actgtccttagtaaatactctgcagaccagccctgagctgctggctcagt
cttatgtaatgcttaattagttactgaataggtaacttccttactgcatt
cctattggattccaagttcataggcttcaagcattttctaggacattgga
atactggtgaagcctctggctatgtcagaattcaatcttaaaagacactt
ataataaaataatactaaaagagagcatgtggatccatacaccagactaa
cacggggatagggtatgagtatacaggttaatgagaacgccaaagctcca
ggaggtgagtttctgtgaaactctttgccttgtgagtgcttccaggcctc
tcagcctgccaagcaaacttcactggagtgtgcatagcaaaggtagttat
cattggtgtttgccacctgcatgccctatctcagaaaatgaaatagaaag
tccctttttttgcacctctaggatcgaaagcaattcattccagctaccaa
gatcattaggtcagttattttttaggtctctccattcctaggaatcagtc
tgaaaatacctttctgagtaaatgagaatgcttccctggaaacttatgag
cctgaaggacattgcagaaatccaagaggtcactcaagcggagaattggc
ggtggcacaaatgatactgtggcttgtcttactccaggatgagtttggtc
agactccaagtgtcttccacatgcaactcctgtatccacaagaacttgta
agaccaaagatgtgattcctagcaaaagcactggattgggaacccatctt
gctgactttccacacatggctcttccactagaattttatgtcaactttag
gcaatctaagtaaaccttaagagcaacacatggaagccagtgagtatgtt
tttataaaataagatgtcataaaagtttgactaaaagtcatattaaagag
aaagcaaactgagtcatcatgctgaacaccctcaatattaaatactaact
gtgaagcagatctttaagtcacaaa
gaattcaggaccttcagaagagcagtcagtgctcttaaccactgagccgt
ctctccagcctttaaaatattttttaagtttaaagtagcaactcaacgaa
acttcttcttgattattgcttcaatgaacataaattaagggaaaccattt
catgttattctgtgatgggaacaatcagcgggttcagtttttctttactg
gatcctgaaaataacaatctcacttgcatgtcatgatttcgcatgcttac
aatactcccatgacatcaaagtataaatgcaaatgtttcacagaccagga
aaactcggctcctttcagcttggtgtattggtgtgtgacagcggagactc
tcatgaaggctgctaattgccaactgtagcttctgatgtcactaaagcag
atttactcttttctggagtatagactggaacactaagatgtgaatgtagg
atgacattagtcagagattcagtagatttataacctatcattgactggtg
aactaacctatcgatacatgatttgcaatacacttgtgtgtttgtgaagt
tgttgtgaactgcaaatattatattaaaatttcattttgtactggaaaaa
ggttcaaagttcaaaaaggttcaaggttcaaggattttgattgaatttgg
ggtgattttatatctttataaagcaaaaaaaatagctagagttgagcaat
ggtttactgaaaaacagtgagatcaagaacaatgtgtagaggagaaagaa
cagtgtgatgaaagccacactcccgggaaaagtctccggattcagaagct
cgagagggtgctctcattactaagttgttttcagccgataatttaattat
cctttgaatgtcaggaggagaacctcacacgcgtagtcatgtggcagttc
attgattgtatacatgttacaagcatgctcagcaaatgtcacctgcagca
gagctgcaagtgtgctgtatggaaatgatctgagtaaaaaaaagctctgg
gtcagccttggatagtgcagggagtcatctgcatcttggtctatgggagt
gggaagttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131725812_131726949
seq2: B6Ng01-132O17.b_48_1172

seq1  GAATTCACCAGCTTGCTTCTAATATGCAATGTAGTCTGTACTGAAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGCTTGCTTCTAATATGCAATGTAGTCTGTACTGAAGATTT  50

seq1  CTATCTCAGTGGCTCTTTCATGGTATTCCCTTGTTTGGGTGAGATTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGTGGCTCTTTCATGGTATTCCCTTGTTTGGGTGAGATTTGCT  100

seq1  ACTGTCCTTAGTAAATACTCTGCAGACCAGCCCTGAGCTGCTGGCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTTAGTAAATACTCTGCAGACCAGCCCTGAGCTGCTGGCTCAGT  150

seq1  CTTATGTAATGCTTAATTAGTTACTGAATAGGTAACTTCCTTACTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAATGCTTAATTAGTTACTGAATAGGTAACTTCCTTACTGCATT  200

seq1  CCTATTGGATTCCAAGTTCATAGGCTTCAAGCATTTTCTAGGACATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGATTCCAAGTTCATAGGCTTCAAGCATTTTCTAGGACATTGGA  250

seq1  ATACTGGTGAAGCCTCTGGCTATGTCAGAATTCAATCTTAAAAGACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTGAAGCCTCTGGCTATGTCAGAATTCAATCTTAAAAGACACTT  300

seq1  ATAATAAAATAATACTAAAAGAGAGCATGTGGATCCATACACCAGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATAATACTAAAAGAGAGCATGTGGATCCATACACCAGACTAA  350

seq1  CACGGGGATAGGGTATGAGTATACAGGTTAATGAGAACGCCAAAGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGATAGGGTATGAGTATACAGGTTAATGAGAACGCCAAAGCTCCA  400

seq1  GGAGGTGAGTTTCTGTGAAACTCTTTGCCTTGTGAGTGCTTCCAGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAGTTTCTGTGAAACTCTTTGCCTTGTGAGTGCTTCCAGGCCTC  450

seq1  TCAGCCTGCCAAGCAAACTTCACTGGAGTGTGCATAGCAAAGGTAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGCCAAGCAAACTTCACTGGAGTGTGCATAGCAAAGGTAGTTAT  500

seq1  CATTGGTGTTTGCCACCTGCATGCCCTATCTCAGAAAATGAAATAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTTTGCCACCTGCATGCCCTATCTCAGAAAATGAAATAGAAAG  550

seq1  TCCCTTTTTTTGCACCTCTAGGATCGAAAGCAATTCATTCCAGCTACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTTTGCACCTCTAGGATCGAAAGCAATTCATTCCAGCTACCAA  600

seq1  GATCATTAGGTCAGTTATTTTTTAGGTCTCTCCATTCCTAGGAATCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAGGTCAGTTATTTTTTAGGTCTCTCCATTCCTAGGAATCAGTC  650

seq1  TGAAAATACCTTTCTGAGTAAATGAGAATGCTTCCCTGGAAACTTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATACCTTTCTGAGTAAATGAGAATGCTTCCCTGGAAACTTATGAG  700

seq1  CCTGAAGGACATTGCAGAAATCCAAGAGGTCACTCAAGCGGAGAATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGACATTGCAGAAATCCAAGAGGTCACTCAAGCGGAGAATTGGC  750

seq1  GGTGGCACAAATGATACTGTGGCTTGTCTTACTCCAGGATGAGTTTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACAAATGATACTGTGGCTTGTCTTACTCCAGGATGAGTTTGGTC  800

seq1  AGACTCCAAGTGTCTTCCACATGCAACTCCTGTATCCACAAGAACTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAAGTGTCTTCCACATGCAACTCCTGTATCCACAAGAACTTGTA  850

seq1  AGACCAAAGATGTGATTCCTAGCAAAAGCACTGGATTTGGAACCCATCTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGACCAAAGATGTGATTCCTAGCAAAAGCACTGGATTGGGAACCCATCTT  900

seq1  GCTGACTTTCCACACATGGCTCTTCCACTAAGAATTTTATGTCAACTTTA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGACTTTCCACACATGGCTCTTCCACT-AGAATTTTATGTCAACTTTA  949

seq1  GGCAATCTAAGTAAACCTTAAAGAGCAACACATGGAAGCCAGTGGAGGTA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||   |||
seq2  GGCAATCTAAGTAAACCTT-AAGAGCAACACATGGAAGCCAGTG--AGTA  996

seq1  TG-TTTTATAAAATAGAATGTCATAAAAGTTTGGACTAAAAGGTCATTAT  1049
      || ||||||||||||  ||||||||||||||| |||||||| |||| |||
seq2  TGTTTTTATAAAATAAGATGTCATAAAAGTTT-GACTAAAA-GTCA-TAT  1043

seq1  TAAAAGAGAAAGCCAAACTGAAGTCATCAATGCTGAACA-CCTCAATATT  1098
      | |||||||||| ||||||| ||||||| |||||||||| ||||||||||
seq2  T-AAAGAGAAAG-CAAACTG-AGTCATC-ATGCTGAACACCCTCAATATT  1089

seq1  AAATATACTACCTGTGAAGCAGTATTCTTTTAGTCACAAA  1138
      ||  |||||| |||||||||||   ||||| |||||||||
seq2  AA--ATACTAACTGTGAAGCAG--ATCTTTAAGTCACAAA  1125

seq1: chr3_131855993_131857080
seq2: B6Ng01-132O17.g_68_1128 (reverse)

seq1  TATAACTTCCCACTCCACTTAGGAGCCCCAAAGATGCAGATTGAACTCCC  50
      |||||||||||||||| | |||      | |||||||||||   ||| ||
seq2  TATAACTTCCCACTCC-CATAG-----ACCAAGATGCAGAT--GACT-CC  41

seq1  CTGCAAACTACTCCAA-GCTGACCCCAGTGAGCCTTTTCTTCTCTGCTTC  99
      ||||  |||| ||||| ||||||||    |||| ||||    | | ||  
seq2  CTGC--ACTA-TCCAAGGCTGACCC---AGAGCTTTTT----TTTACT--  79

seq1  CAGATTCCATTTCTCACTACCGGCACACTCTGCAGCTCTTGCTGCA-GTG  148
      |||||  |||||| || || | ||||||| |||||||| ||||||| |||
seq2  CAGAT--CATTTC-CA-TA-CAGCACACT-TGCAGCTC-TGCTGCAGGTG  122

seq1  ACATTTGCTGAGCATGCTTTGTACATGTATACATTCATTGAACTTGCACA  198
      |||||||||||||||||||   ||||||||||| ||| ||||||  ||| 
seq2  ACATTTGCTGAGCATGCTTGTAACATGTATACAATCAATGAACTGCCAC-  171

seq1  ATGACTACGCGTGTGAGGTTCTCCTCCTGACAATTCAAAGGATAATTAAA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGACTACGCGTGTGAGGTTCTCCTCCTGAC-ATTCAAAGGATAATTAAA  220

seq1  -TATCGGCTGAAACAACCTTAGTAAATGAGAGCACCCTCTCGGGCTTCTG  297
       ||||||||||||  | |||||| |||||||||||||||||| |||||||
seq2  TTATCGGCTGAAAACAACTTAGT-AATGAGAGCACCCTCTCGAGCTTCTG  269

seq1  AATCCGGAGACTTTTCCCGGGAGTGTGGCTTTCATCACACTGTTCTTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGAGACTTTTCCCGGGAGTGTGGCTTTCATCACACTGTTCTTTCT  319

seq1  CCTCTACACATTGTTCTTGATCTCACTGTTTTTCAGT-AACCATTGCTCA  396
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTCTACACATTGTTCTTGATCTCACTGTTTTTCAGTAAACCATTGCTCA  369

seq1  ACTCTAGCTATTTTTTTTGCTTTATAAAGATATAAAATCACCCCAAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCTATTTTTTTTGCTTTATAAAGATATAAAATCACCCCAAATTC  419

seq1  AATCAAAATCCTTGAACCTTGAACCTTTTTGAACTTTGAACCTTTTTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATCCTTGAACCTTGAACCTTTTTGAACTTTGAACCTTTTTCCA  469

seq1  GTACAAAATGAAATTTTAATATAATATTTGCAGTTCACAACAACTTCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAATGAAATTTTAATATAATATTTGCAGTTCACAACAACTTCACA  519

seq1  AACACACAAGTGTATTGCAAATCATGTATCGATAGGTTAGTTCACCAGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAGTGTATTGCAAATCATGTATCGATAGGTTAGTTCACCAGTC  569

seq1  AATGATAGGTTATAAATCTACTGAATCTCTGACTAATGTCATCCTACATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGGTTATAAATCTACTGAATCTCTGACTAATGTCATCCTACATT  619

seq1  CACATCTTAGTGTTCCAGTCTATACTCCAGAAAAGAGTAAATCTGCTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTAGTGTTCCAGTCTATACTCCAGAAAAGAGTAAATCTGCTTTA  669

seq1  GTGACATCAGAAGCTACAGTTGGCAATTAGCAGCCTTCATGAGAGTCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAGAAGCTACAGTTGGCAATTAGCAGCCTTCATGAGAGTCTCC  719

seq1  GCTGTCACACACCAATACACCAAGCTGAAAGGAGCCGAGTTTTCCTGGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACACACCAATACACCAAGCTGAAAGGAGCCGAGTTTTCCTGGTC  769

seq1  TGTGAAACATTTGCATTTATACTTTGATGTCATGGGAGTATTGTAAGCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACATTTGCATTTATACTTTGATGTCATGGGAGTATTGTAAGCAT  819

seq1  GCGAAATCATGACATGCAAGTGAGATTGTTATTTTCAGGATCCAGTAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAATCATGACATGCAAGTGAGATTGTTATTTTCAGGATCCAGTAAAG  869

seq1  AAAAACTGAACCCGCTGATTGTTCCCATCACAGAATAACATGAAATGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGAACCCGCTGATTGTTCCCATCACAGAATAACATGAAATGGTT  919

seq1  TCCCTTAATTTATGTTCATTGAAGCAATAATCAAGAAGAAGTTTCGTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAATTTATGTTCATTGAAGCAATAATCAAGAAGAAGTTTCGTTGA  969

seq1  GTTGCTACTTTAAACTTAAAAAATATTTTAAAGGCTGGAGAGACGGCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACTTTAAACTTAAAAAATATTTTAAAGGCTGGAGAGACGGCTCA  1019

seq1  GTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAATTC  1061