BAC Information

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BAC

Clone NameB6Ng01-133G02
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,097 - 41,059,737106,355,729 - 106,356,711
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133G02.bB6Ng01-133G02.g
ACCDH933941DH933942
length980993
definitionDH933941|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G02, 5' end.DH933942|Mus musculus domesticus DNA, BAC clone: B6Ng01-133G02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,097 - 41,059,737)(106,355,729 - 106,356,711)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
gtatccgatttgggataggtaaagatcctttcccaatctgttggcggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcctcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccgcttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgttatccttggttttttgttattccagatg
aatctgccgattgcactttctaattcgttgaagaatttagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatgtttccatctt
ctgagatcttctttaatgtctttctttagcgacttgaagttcttatcata
cagatctttcacttccttagttagagtcactccaaggtatttatattatt
tgtgactatgagaggtgtgtttccctaata
gaattcttctgagaaatggagattcttcacagatacttcacagaacagcc
aacttacactcatacaagaatgtattagggcctaggaattaggggggttg
tggtattgcattattcatgagactcaaaggagtagcacaaattgtgacta
gggtgtgaaatccttacctgtcattagctgaccctaagcagaggtgtttt
atctttactgtaaatattacctggttcctgtaagtccttttgaagtcatt
cctttgttcaatgtactttgcctgctgtgacatcctaccccccttggttt
tctgtattatataagattggtgttcactttgtgacaatacattcagattc
tacacaatctcctgtgttgcatctgtttgtcattcattctccgactcctt
gtccatctgcaaccagagacccgttcttcacagacaagggaccaaaaggg
tctgcggcaattacccttattcatttacttatttgtgtttttgtttattt
ttgtgataggtattctcactatatttaaagcttactgactcagctagttt
agctagcaaactgcagccatctatttgtcccaactgcccagtgcaaggac
cacagatgtgtggtgtcttgcctgttttttgcatattggtataagaaatc
taaactcaagtatccatgctgtagtgacaaacaattcaatggctaagcta
cctactgtgcatgttaactatgtttttagaaaattatacatcattcctca
ttagggcaaaattattattctatggagttggttaggggttatattttata
aaggttcttcaaattaaattttgcacaagatgacatggattattagcagc
aaggtcatctgcccttgttcatttaatatagattattgctgtattgatat
ttcaattaaattctaatttgatgcatctctgcgaaatgaattgaacctca
gaccttgaatttttgttcttaggtttaaccccctatacagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059097_41059737
seq2: B6Ng01-133G02.b_47_688 (reverse)

seq1  CTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTG  50
      ||||||||||||||||||||| |||||||| || ||||||||||||||||
seq2  CTCTGGTGGAATCACCATGCCGGACCTAAAACTGTACTACAGAGCAATTG  50

seq1  TGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGG  100
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATCAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGG  100

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  150
      || |||||||||||| |||| | ||| |||||||||||||||||||||||
seq2  AACAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  150

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  200

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  250
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAATT  250

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  300
      |||||| | |||||||||||||||||||||||||||||| |||| |||||
seq2  GATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGCGGATTAAGGA  300

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  350
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGA  350

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  400
      ||||||| || |||||||  ||||||| |||||||||| |||||||||||
seq2  AAAGCCTCGAGGATATGGGTACAGGGGGAAAATTCCTGAATAGAACAGCA  400

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  450
      |||||||||||||||||||  ||||| || |||||||||||||| ||| |
seq2  ATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCTCATAAAATT  450

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CAC  499
      ||||||||||||||| |||||||||||||||||||||||||||||| | |
seq2  GCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCGC  500

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  549
      ||||||||||||||||||||||||||||||| ||||| |||| |||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGATACGGGACTA  550

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  599
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  ATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAA  600

seq1  TAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  641
      |||||||||||||||||||||||||||||| |||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  642

seq1: chr10_106355729_106356711
seq2: B6Ng01-133G02.g_67_1059 (reverse)

seq1  ACTCTGTGTAGGGGGTT-AACCT-AGAAAAAAAATTCAAGATCTTAGGTT  48
      ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||
seq2  ACTCTGTATAGGGGGTTAAACCTAAGAACAAAAATTCAAGGTCTGAGGTT  50

seq1  CAATTCAATTCTGCAGAGATGCATCAAATTAGAATTAATTTGAAATATCA  98
      ||||||| ||| |||||||||||||||||||||||| | |||||||||||
seq2  CAATTCATTTC-GCAGAGATGCATCAAATTAGAATTTAATTGAAATATCA  99

seq1  ATACAGCAATAATTCTATATTTAAATGAACAA-GGCAGATGACCTTGCTG  147
      |||||||||||| |||||| |||||||||||| |||||||||||||||||
seq2  ATACAGCAATAA-TCTATA-TTAAATGAACAAGGGCAGATGACCTTGCTG  147

seq1  CT-ATAATCCCATGTCATCTTGTGCAAAA-TTAATTTG-AGAACC-TTAT  193
      || ||||| |||||||||||||||||||| |||||||| |||||| ||||
seq2  CTAATAAT-CCATGTCATCTTGTGCAAAATTTAATTTGAAGAACCTTTAT  196

seq1  -AAATATAA-CCCTAACCAACT-CATAGAATAATAATTTTGCCCT-ATGA  239
       |||||||| |||||||||||| |||||||||||||||||||||| ||||
seq2  AAAATATAACCCCTAACCAACTCCATAGAATAATAATTTTGCCCTAATGA  246

seq1  GG-ATGATGTATAATTTTCT-AAAACATAGTTAACATGCACAGTAGGTAG  287
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAATGATGTATAATTTTCTAAAAACATAGTTAACATGCACAGTAGGTAG  296

seq1  CTTAGCCATTGAATTGTTTGTCACTACAGCATGGATACTTGAGTTTAGAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCATTGAATTGTTTGTCACTACAGCATGGATACTTGAGTTTAGAT  346

seq1  TTCTTATACCAATATGC-AAAAACAGGCAAGACACCACACATCTGTGGTC  386
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTTATACCAATATGCAAAAAACAGGCAAGACACCACACATCTGTGGTC  396

seq1  CTTGCACTGGGCAGTTGGGACAAATAGATGGCTGCAGTTTGCTAGCTAAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTGGGCAGTTGGGACAAATAGATGGCTGCAGTTTGCTAGCTAAA  446

seq1  CTAGCTGAGTCAGTAAGCTTTAAATATAGTGAGAATACCTATCACAAAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGAGTCAGTAAGCTTTAAATATAGTGAGAATACCTATCACAAAAA  496

seq1  TAAACAAAAACACAAATAAGTAAATGAATAAGGGTAATTGCCGCAGACCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAACACAAATAAGTAAATGAATAAGGGTAATTGCCGCAGACCC  546

seq1  TTTTGGTCCCTTGTCTGTGAAGAACGGGTCTCTGGTTGCAGATGGACAAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCCCTTGTCTGTGAAGAACGGGTCTCTGGTTGCAGATGGACAAG  596

seq1  GAGTCGGAGAATGAATGACAAACAGATGCAACACAGGAGATTGTGTAGAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGAGAATGAATGACAAACAGATGCAACACAGGAGATTGTGTAGAA  646

seq1  TCTGAATGTATTGTCACAAAGTGAACACCAATCTTATATAATACAGAAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTATTGTCACAAAGTGAACACCAATCTTATATAATACAGAAAA  696

seq1  CCAAGGGGGGTAGGATGTCACAGCAGGCAAAGTACATTGAACAAAGGAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGGGTAGGATGTCACAGCAGGCAAAGTACATTGAACAAAGGAAT  746

seq1  GACTTCAAAAGGACTTACAGGAACCAGGTAATATTTACAGTAAAGATAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAAAGGACTTACAGGAACCAGGTAATATTTACAGTAAAGATAAA  796

seq1  ACACCTCTGCTTAGGGTCAGCTAATGACAGGTAAGGATTTCACACCCTAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGCTTAGGGTCAGCTAATGACAGGTAAGGATTTCACACCCTAG  846

seq1  TCACAATTTGTGCTACTCCTTTGAGTCTCATGAATAATGCAATACCACAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTTGTGCTACTCCTTTGAGTCTCATGAATAATGCAATACCACAA  896

seq1  CCCCCCTAATTCCTAGGCCCTAATACATTCTTGTATGAGTGTAAGTTGGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTAATTCCTAGGCCCTAATACATTCTTGTATGAGTGTAAGTTGGC  946

seq1  TGTTCTGTGAAGTATCTGTGAAGAATCTCCATTTCTCAGAAGAATTC  983
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGAAGTATCTGTGAAGAATCTCCATTTCTCAGAAGAATTC  993