BAC Information

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BAC

Clone NameB6Ng01-134A22
Chromosome3 (Build37)
Map Location 39,403,089 - 39,546,830
singlet/doubletdoublet
Overlap geneLOC100041443
Upstream geneLOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041458, LOC100040882, Intu, Slc25a31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134A22.bB6Ng01-134A22.g
ACCDH934449DH934450
length1,157765
definitionDH934449|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A22, 5' end.DH934450|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,403,089 - 39,404,248)(39,546,066 - 39,546,830)
sequence
gaattcacttatcaatacctgtagtgtttttcctgtacatcccgatagat
tcttgaaatttgctttcttcctttgtgtacattacattgtctgtcctttg
tcaccctcagttgtatcaaaaataattcaatgcggcaaatatcattcact
ctgtccacagtagttaatattgtactgtgataatttttaagtggagaaaa
tgtgtcaattaacagcttacacatatctgtaagcaatttagcccaatcta
atattcttatacatccatttactgagtttgttttacaatttaaatacagt
aaatagtaaagtagtatacatatttcattacattgttgtaggagaacttt
aaaaaaacaataaaatgcccacaataacttccctgcataggtctatttgc
cattaaacaattcacatgttgatcagtgcacacacctgtggtgcacttga
catacgagaagttcctcctggctttaccacccaactcagagtctccaccc
tgtccaactatacacacaagtcctcttattctccttatacattccactct
ttgtaaatgcaaaaacaaaaacaaaaaaaacaaaacaaaacaaacacagc
aaaacctatgtattcatgcagaatacactggccatgtgatctgagattaa
gttttatcattgatttaattagatgatttaattacttctcaatgatgatt
agttgtcttatcacaaagatctttcagagtatattcactaatgtacattg
agacttgtttcctgtttgtttatttttaaacaatcctggttttgtttcgt
tattttgttttattttcaggcaaaaaccacagtgtaatctttgttggcct
gaaacatgctgtgtggaacaggctgacctcaaacttgcagtaattctcct
gtcttggtgtccaagcctgcactggcacactggagcaagcttcttggcag
tgcttcatgagtcatgtccccagaactatttgttcttctcagtagtgagt
gaatctcaatggctgcctgactagtgcacagttgctgttgttgagacata
tttacaatacgccacttggttcttctcccacaaaatatagctgtgttccc
aaattctcagtgagacctctaggacggacttccatcaatcagcttagcta
tccaaag
gaattcttagaacacagtattatcctgaaattgtgaaatgtctcattagg
cgtatccataacattcccaccagtcctcaagatgttaaggtttctagaaa
gttcattgcttaattggacaaaacaatgtataaaaataatgttttaaaga
ggagcttaaactaattattatatttttttgtgtaatgttagcaatgctaa
tggatttcaatggctgagctcattactgacgaaaggctaataacacttgg
tgcagaacgtgttatagtagaaaagaatttgaaataatctgtattttaca
ttgttccacagttctctgactgctctcagaattcatataaaacatataat
ttcaagttaacttcaattcgagtcttataaacatttaattaagaatcaat
gaaatattgtacttgaagaaaatatacatataaagcgtctgtggctcagt
ttctgaaagaggtgctttgtgaactaaaaagtaacatacgtcataattca
aaacagctgacacctcttgtaaatcccacctggtaggtttaaggacagtg
ttcatgtagagatgcctacatcttccttaagtccatacaaaatactctcc
agtgaacctggctcccccaaactgcacatccctcagaacctggccgttat
aggacaatagtgtatacaaggatcacagttacctgcacgacatggaccag
attcagtcagttcttatcatacctccggggaggaagaaagggagagggag
agagggagagggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39403089_39404248
seq2: B6Ng01-134A22.b_50_1206

seq1  GAATTCACTTATCAATACCTGTAGTGTTTTTCCTGTACATCCCGATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATCAATACCTGTAGTGTTTTTCCTGTACATCCCGATAGAT  50

seq1  TCTTGAAATTTGCTTTCTTCCTTTGTGTACATTACATTGTCTGTCCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAATTTGCTTTCTTCCTTTGTGTACATTACATTGTCTGTCCTTTG  100

seq1  TCACCCTCAGTTGTATCAAAAATAATTCAATGCGGCAAATATCATTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCAGTTGTATCAAAAATAATTCAATGCGGCAAATATCATTCACT  150

seq1  CTGTCCACAGTAGTTAATATTGTACTGTGATAATTTTTAAGTGGAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACAGTAGTTAATATTGTACTGTGATAATTTTTAAGTGGAGAAAA  200

seq1  TGTGTCAATTAACAGCTTACACATATCTGTAAGCAATTTAGCCCAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAATTAACAGCTTACACATATCTGTAAGCAATTTAGCCCAATCTA  250

seq1  ATATTCTTATACATCCATTTACTGAGTTTGTTTTACAATTTAAATACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTATACATCCATTTACTGAGTTTGTTTTACAATTTAAATACAGT  300

seq1  AAATAGTAAAGTAGTATACATATTTCATTACATTGTTGTAGGAGAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAAGTAGTATACATATTTCATTACATTGTTGTAGGAGAACTTT  350

seq1  AAAAAAACAATAAAATGCCCACAATAACTTCCCTGCATAGGTCTATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAATAAAATGCCCACAATAACTTCCCTGCATAGGTCTATTTGC  400

seq1  CATTAAACAATTCACATGTTGATCAGTGCACACACCTGTGGTGCACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAATTCACATGTTGATCAGTGCACACACCTGTGGTGCACTTGA  450

seq1  CATACGAGAAGTTCCTCCTGGCTTTACCACCCAACTCAGAGTCTCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGAGAAGTTCCTCCTGGCTTTACCACCCAACTCAGAGTCTCCACCC  500

seq1  TGTCCAACTATACACACAAGTCCTCTTATTCTCCTTATACATTCCACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACTATACACACAAGTCCTCTTATTCTCCTTATACATTCCACTCT  550

seq1  TTGTAAATGCAAAAACAAAAACAAAAAAAACAAAACAAAACAAACACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGCAAAAACAAAAACAAAAAAAACAAAACAAAACAAACACAGC  600

seq1  AAAACCTATGTATTCATGCAGAATACACTGGCCATGTGATCTGAGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATGTATTCATGCAGAATACACTGGCCATGTGATCTGAGATTAA  650

seq1  GTTTTATCATTGATTTAATTAGATGATTTAATTACTTCTCAATGATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCATTGATTTAATTAGATGATTTAATTACTTCTCAATGATGATT  700

seq1  AGTTGTCTTATCACAAAGATCTTTCAGAGTATATTCACTAATGTACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTATCACAAAGATCTTTCAGAGTATATTCACTAATGTACATTG  750

seq1  AGACTTGTTTCCTGTTTGTTTATTTTTAAACAATCCTGGTTTTGTTTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTTTCCTGTTTGTTTATTTTTAAACAATCCTGGTTTTGTTTCGT  800

seq1  TATTTTGTTTTATTTTCAGGCAAAAACCACAGTGTAATCTTTGTTGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTTATTTTCAGGCAAAAACCACAGTGTAATCTTTGTTGGCCT  850

seq1  GAAACATGCTGTGTGGAACAGGCTGACCTCAAACTTGCAGTAATTCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCTGTGTGGAACAGGCTGACCTCAAACTTGCAGTAATTCTCCT  900

seq1  GTCTTGGTGTCCAAGCCTGCACTGGCACACTGGAGCAAGCTTCTTGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTGTCCAAGCCTGCACTGGCACACTGGAGCAAGCTTCTTGGCAG  950

seq1  TGCTTCATGAGTCATGTCCCCAGAACTATTTGTTCTTCTCAGTAGGTGAG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTTCATGAGTCATGTCCCCAGAACTATTTGTTCTTCTCAGTA-GTGAG  999

seq1  TGAATCTCAATGGCTGCCTGACCTAGTGCACAGGTGCTGTTGTTGGAAGA  1050
      ||||||||||||||||||||| ||||||||||| |||||||||||  || 
seq2  TGAATCTCAATGGCTGCCTGA-CTAGTGCACAGTTGCTGTTGTTG--AG-  1045

seq1  ACATATTTTACAATACG-CACTTGGTTTCTCTCCCACAATATA-AGCTGT  1098
      ||||| ||||||||||| |||||||||  |||||||||| ||| ||||| 
seq2  ACATA-TTTACAATACGCCACTTGGTTCTTCTCCCACAAAATATAGCTG-  1093

seq1  TGGTCCCAAATTCTCAGT-AGA-CTCTA-GACAGACTTCTCATC-ATCAG  1144
      || ||||||||||||||| ||| ||||| ||| |||||| |||| |||||
seq2  TGTTCCCAAATTCTCAGTGAGACCTCTAGGACGGACTTC-CATCAATCAG  1142

seq1  CTTTAGCTATCAAAAG  1160
      | ||||||||| ||||
seq2  C-TTAGCTATCCAAAG  1157

seq1: chr3_39546066_39546830
seq2: B6Ng01-134A22.g_65_829 (reverse)

seq1  TCTCCCTCTCCCTCTCTCCCTCTCCCTTTCTTCCTCCCCGGAGGTATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCCCTCTCTCCCTCTCCCTTTCTTCCTCCCCGGAGGTATGAT  50

seq1  AAGAACTGACTGAATCTGGTCCATGTCGTGCAGGTAACTGTGATCCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGACTGAATCTGGTCCATGTCGTGCAGGTAACTGTGATCCTTGT  100

seq1  ATACACTATTGTCCTATAACGGCCAGGTTCTGAGGGATGTGCAGTTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTATTGTCCTATAACGGCCAGGTTCTGAGGGATGTGCAGTTTGGG  150

seq1  GGAGCCAGGTTCACTGGAGAGTATTTTGTATGGACTTAAGGAAGATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGTTCACTGGAGAGTATTTTGTATGGACTTAAGGAAGATGTAG  200

seq1  GCATCTCTACATGAACACTGTCCTTAAACCTACCAGGTGGGATTTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTACATGAACACTGTCCTTAAACCTACCAGGTGGGATTTACAAG  250

seq1  AGGTGTCAGCTGTTTTGAATTATGACGTATGTTACTTTTTAGTTCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCAGCTGTTTTGAATTATGACGTATGTTACTTTTTAGTTCACAAA  300

seq1  GCACCTCTTTCAGAAACTGAGCCACAGACGCTTTATATGTATATTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTTTCAGAAACTGAGCCACAGACGCTTTATATGTATATTTTCTT  350

seq1  CAAGTACAATATTTCATTGATTCTTAATTAAATGTTTATAAGACTCGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAATATTTCATTGATTCTTAATTAAATGTTTATAAGACTCGAAT  400

seq1  TGAAGTTAACTTGAAATTATATGTTTTATATGAATTCTGAGAGCAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAACTTGAAATTATATGTTTTATATGAATTCTGAGAGCAGTCAG  450

seq1  AGAACTGTGGAACAATGTAAAATACAGATTATTTCAAATTCTTTTCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTGGAACAATGTAAAATACAGATTATTTCAAATTCTTTTCTACT  500

seq1  ATAACACGTTCTGCACCAAGTGTTATTAGCCTTTCGTCAGTAATGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACGTTCTGCACCAAGTGTTATTAGCCTTTCGTCAGTAATGAGCTC  550

seq1  AGCCATTGAAATCCATTAGCATTGCTAACATTACACAAAAAAATATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGAAATCCATTAGCATTGCTAACATTACACAAAAAAATATAATA  600

seq1  ATTAGTTTAAGCTCCTCTTTAAAACATTATTTTTATACATTGTTTTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTAAGCTCCTCTTTAAAACATTATTTTTATACATTGTTTTGTCC  650

seq1  AATTAAGCAATGAACTTTCTAGAAACCTTAACATCTTGAGGACTGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGCAATGAACTTTCTAGAAACCTTAACATCTTGAGGACTGGTGGG  700

seq1  AATGTTATGGATACGCCTAATGAGACATTTCACAATTTCAGGATAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATGGATACGCCTAATGAGACATTTCACAATTTCAGGATAATACT  750

seq1  GTGTTCTAAGAATTC  765
      |||||||||||||||
seq2  GTGTTCTAAGAATTC  765