BAC Information

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BAC

Clone NameB6Ng01-134F16
Chromosome3 (Build37)4 (Build37)
Map Location 41,058,921 - 41,059,73772,836,882 - 72,837,900
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134F16.bB6Ng01-134F16.g
ACCDH934673DH934674
length9981,016
definitionDH934673|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F16, 5' end.DH934674|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,921 - 41,059,737)(72,836,882 - 72,837,900)
sequence
gaattctttgtttagctctgagccccaacttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatactggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatcttttttttgtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tcaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgctcatatcttcgaggcttttccccac
tttctcctctataagtttcaggtctctggttttatgtggagctcctggat
ccacttagatttgaccttagtacaaggagataggaatggatcaattctca
ttcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagatcccttgtcgaagttcaagtg
accataggtgtgtggttttatttctgggtcttcaattctattccattggt
ctacttttctgtcattataccagtaccatgctgtttttatcacaattgct
ctgtaataaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctagcctaggtttttttgttattccagatg
aatttgcagattgttctttctaattcgttgaagaattgaattggaatttt
gatggggatttcattgaatctatagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatcttttaatctt
ctgggaatttttaaattttttgaaacatgaaaccatttttcataatgggt
gtgtatgtgcatatttagcaatctgcttacatttcctcttattgagaata
gttttatttttcacatttaaattatgatttccctcccatctgtaaacc
gaattcatcagataagttaatttgcttaattgggcagctaacttatagga
cttttcttactgaaaactcataaaagccaccagcaaacatctcaagaagt
ccttagttagaccattcccattgtgttactgttttgtatgaattcttact
tataactttattgtggatagccatggtgctgtttgtgttttgatgctaat
tctgcttccctaggaggggctgcctgggatatggggtgcatcatgtactc
aggtgccttcttatgaacctttccctaatgaattaagatttcaaggaaac
aatccctgacgagtgggcagaacttccagatcagagaaagggagagcaga
agaggagaggagatgaggttttttgacagaaaaaaaacgatagagaaaaa
ttgtaggtagctgaggcctcctgttcaggtggtggatctgttgtgatcca
ctaatggaggatttaattcacaattgcttacaaattaggatgctagttgc
tgtgcccaacgattgtgttaccttttgactctagactaagtttgtgtggt
gttttcctttagaggggactcaactgtgtttcagagagaaaggtctggca
acagagcatgggtttgtgagaagtgtacctcaaaaagccatgggaatttg
ggagcatggggctggtgttgcagtgactccccatggagaaccaggtggag
agattttgaagctcaggtcagagagtctgtttgagatgcgaacaggccag
cctgcctacttgtgcactgctagtgtagtatggattgttgtttaatattt
catgcatcataacccattaattcaagttatttaatttaagtttcttggac
actttatagaacacacctaactaaccagcaaacttaactcctgaggataa
cagtggaaattatagagtaaatcagcatctcaggtggtcttttacatgaa
gaatttccagctttgtgtattgtctgacttgttatatggtcatatcccat
atcgcaatctaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058921_41059737
seq2: B6Ng01-134F16.b_54_871 (reverse)

seq1  GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTATAG  50

seq1  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTG  100
      |||||||| |||||||||||||||||||| |||||||||||||||||| |
seq2  ATTCAATGAAATCCCCATCAAAATTCCAATTCAATTCTTCAACGAATTAG  100

seq1  AAAGAGCAATCTGCAAATTCATCTGGAATAAC-AAAAAACCTAGGATAGC  149
      ||||| |||||||||||||||||||||||||| |||||||||||| ||||
seq2  AAAGAACAATCTGCAAATTCATCTGGAATAACAAAAAAACCTAGGCTAGC  150

seq1  AAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTG  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTG  200

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  249
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  ACCTAAAGCTTTATTACAGAGCAATTGTGATAAAAACAGCATGGTACTGG  250

seq1  TATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAAC  299
      |||| ||||||| ||| ||||||||||||||||||||||||| |||||| 
seq2  TATAATGACAGAAAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAAT  300

seq1  GAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  349
       || |||||||||||||||||||||| ||||||||||||| |||||||||
seq2  AAAACCACACACCTATGGTCACTTGAACTTCGACAAGGGATCTAAAACCA  350

seq1  TCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  400

seq1  TTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTAC  449
      | ||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TGGTTATCATGTAGAAGAATGAGAATTGATCCATTCCTATCTCCTTGTAC  450

seq1  TAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACAC  499
      |||||||||||||||||||||| |||| | |||||||||||||||||| |
seq2  TAAGGTCAAATCTAAGTGGATCCAGGAGCTCCACATAAAACCAGAGAC-C  499

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACA  549
      |||||||||||||||||||||||||||||||||| |||||||||  ||||
seq2  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGAGCACA  549

seq1  GGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAG  599
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  GGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  599

seq1  AATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAG  649
       || |||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATTGACAAATGGGACCTGATGAAACTGCAAAGCTTCTGCAAGGCAAAAG  649

seq1  ACACCGTCAATAAGACAAAAAGGC-ACCAACAGATTGGGAAAGGATCTTT  698
      |||||||||||||||||||||| | |  || |||||||||||||||||||
seq2  ACACCGTCAATAAGACAAAAAGACAAAAAAAAGATTGGGAAAGGATCTTT  699

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACT  748
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  ACCTATCCTAAATCAGATAGGGGACTAATATCCAGTATATATAAAGAACT  749

seq1  CAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  798
      |||||||||||| ||||||||||||||||||||||||||||  |||||||
seq2  CAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAGTTGGGGCT  799

seq1  CAGAGCTAAACAAAGAATT  817
      |||||||||||||||||||
seq2  CAGAGCTAAACAAAGAATT  818

seq1: chr4_72836882_72837900
seq2: B6Ng01-134F16.g_70_1085

seq1  GAATTCATCAGATAAGTTAATTTGCTTAATTGGGCAGCTAACTTATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGATAAGTTAATTTGCTTAATTGGGCAGCTAACTTATAGGA  50

seq1  CTTTTCTTACTGAAAACTCATAAAAGCCACCAGCAAACATCTCAAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTACTGAAAACTCATAAAAGCCACCAGCAAACATCTCAAGAAGT  100

seq1  CCTTAGTTAGACCATTCCCATTGTGTTACTGTTTTGTATGAATTCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTAGACCATTCCCATTGTGTTACTGTTTTGTATGAATTCTTACT  150

seq1  TATAACTTTATTGTGGATAGCCATGGTGCTGTTTGTGTTTTGATGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTATTGTGGATAGCCATGGTGCTGTTTGTGTTTTGATGCTAAT  200

seq1  TCTGCTTCCCTAGGAGGGGCTGCCTGGGATATGGGGTGCATCATGTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCCTAGGAGGGGCTGCCTGGGATATGGGGTGCATCATGTACTC  250

seq1  AGGTGCCTTCTTATGAACCTTTCCCTAATGAATTAAGATTTCAAGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCTTCTTATGAACCTTTCCCTAATGAATTAAGATTTCAAGGAAAC  300

seq1  AATCCCTGACGAGTGGGCAGAACTTCCAGATCAGAGAAAGGGAGAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGACGAGTGGGCAGAACTTCCAGATCAGAGAAAGGGAGAGCAGA  350

seq1  AGAGGAGAGGAGATGAGGTTTTTTGACAGAAAAAAAACGATAGAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGAGATGAGGTTTTTTGACAGAAAAAAAACGATAGAGAAAAA  400

seq1  TTGTAGGTAGCTGAGGCCTCCTGTTCAGGTGGTGGATCTGTTGTGATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTAGCTGAGGCCTCCTGTTCAGGTGGTGGATCTGTTGTGATCCA  450

seq1  CTAATGGAGGATTTAATTCACAATTGCTTACAAATTAGGATGCTAGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGAGGATTTAATTCACAATTGCTTACAAATTAGGATGCTAGTTGC  500

seq1  TGTGCCCAACGATTGTGTTACCTTTTGACTCTAGACTAAGTTTGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAACGATTGTGTTACCTTTTGACTCTAGACTAAGTTTGTGTGGT  550

seq1  GTTTTCCTTTAGAGGGGACTCAACTGTGTTTCAGAGAGAAAGGTCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTTAGAGGGGACTCAACTGTGTTTCAGAGAGAAAGGTCTGGCA  600

seq1  ACAGAGCATGGGTTTGTGAGAAGTGTACCTCAAAAAGCCATGGGAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCATGGGTTTGTGAGAAGTGTACCTCAAAAAGCCATGGGAATTTG  650

seq1  GGAGCATGGGGCTGGTGTTGCAGTGACTCCCCATGGAGAACCAGGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGGGCTGGTGTTGCAGTGACTCCCCATGGAGAACCAGGTGGAG  700

seq1  AGATTTTGAAGCTCAGGTCAGAGAGTCTG-TTGAGATGCGAACAGGCCAG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGATTTTGAAGCTCAGGTCAGAGAGTCTGTTTGAGATGCGAACAGGCCAG  750

seq1  CCTGCCTACTTGTGCACTGCTAGTGTAGTATGGATTGTTTGTTTAATATT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGCCTACTTGTGCACTGCTAGTGTAGTATGGATTG-TTGTTTAATATT  799

seq1  TCATGCATCATAACCCATTAATTCAAGTTAATTAATTTAAG-TTCTTGGA  848
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  TCATGCATCATAACCCATTAATTCAAGTTATTTAATTTAAGTTTCTTGGA  849

seq1  CACTTTATAGAACACACCTAACTAACCAGCAAACTTAAC-CCTGAGGATA  897
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTTTATAGAACACACCTAACTAACCAGCAAACTTAACTCCTGAGGATA  899

seq1  ACAGTGGAAATTATAGAGTAAATCAGCATCTCAGGTGGTCTTTTACATGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAAATTATAGAGTAAATCAGCATCTCAGGTGGTCTTTTACATGA  949

seq1  AGAATTTCAAGCTTTGGTGTATTGTCTGACTTGTATATATTGTCAATATC  997
      |||||||| |||||| |||||||||||||||||| ||||| ||| |||||
seq2  AGAATTTCCAGCTTT-GTGTATTGTCTGACTTGT-TATATGGTC-ATATC  996

seq1  CCATATCTGTCAATCTAAGTTT  1019
      |||||||   ||||||||||||
seq2  CCATATC--GCAATCTAAGTTT  1016