BAC Information

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BAC

Clone NameB6Ng01-134J14
Chromosome3 (Build37)
Map Location 90,658,412 - 90,848,156
singlet/doubletdoublet
Overlap geneLOC635737, EG668174, LOC668179, LOC635756
Upstream geneShe, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
Downstream gene4930529C04Rik, 9130204L05Rik, LOC100042463, Pglyrp3, EG619750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J14.bB6Ng01-134J14.g
ACCDH934856DH934857
length1,2291,040
definitionDH934856|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J14, 5' end.DH934857|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,658,412 - 90,659,674)(90,847,106 - 90,848,156)
sequence
gaattctggcaggacaaatctctgttgatggaatgctattaataagagac
tagaaaatggaggctgatcccctcaggaattttcaccaacatagtccagg
aattcaaaactactagacacaggatcctctcacctgacataactgagcag
ctacctggctttcagtgagtcaagcctttgaacttgactccattttgatc
aactaggattatcttcatatagatgtgcctgatttacatggaaccaactt
gcatggttgaaactgtgtaaatagaatttacatccacaataaccatagaa
actgtacatcaggcattcaggattgtcatcctttacatggagtgaattat
atgctgggaatctcaagagaaagacacttgcccttatcattaaaagattt
ctttcgctgaatagtggtggcgcatgcctttacatcccagcacttgggag
gtagagccaggcagatttctgagtttgaggccagtctggtctacagagtt
agttccaggacagctagggctatagaggaaccctgtctcaacaaacaaaa
aacccaaacaaacaaacaaaaaatgatttcccacaaatgaatactccatc
agcccattgtcctagcttgtgtgccatttctcttattccttcctacccag
ttgtttctttgtttcaagcccagtataatatcacaaaatattaaatcatt
catgaattcccaactattaaaatgatgtcatgtttttaatcacatagcac
ctattattttctatctccctctggaccttcatgtttgccttgtgtagatt
agatgtctgatgattcaggaactcacagtgttcctaaagggatttgattt
cacattacttgattttgcccttttctgtgctctcatatttgtgctgcctg
gaactggatgcctgaagcattttggctagatactcccagcattcctgtta
gtgttcctgctccagaactttacttggaatcctagaaattcatcatcctt
gctttgagtgaattgtctctctctgactagtggctttctccttcaggcac
taacatgtggtctgagacatctaagttcctgcaagcatgttggaagagct
actgcttcagctgtacacctggatcagaatgctccctttctatgataagg
caacagatcagatcctcctaatggacctgaaccgttaacactgaatagat
tgcagcgtcaggctggataggctcaccca
gaattccttcctaataggaaccttcaacgtgccctggaattatgttccct
gaggatttgatgaactgtggctctagagtcagatctgcttcaggaatctg
agggctgagggttcaggtagctcccttcttaatacctccactagggtatt
caagagaggagaggaggaagaaaagaagtagaaaactgttcccaggaccc
agctcaccatgttatcactgctacttctgtcccatgtccatttattcatt
tattctaaattcagcccaaaaaaactgccaatggcctataatcttcatcc
ctgttttttttttttttctttctgtgccattttgaagatgtttagaggtt
acctggatgggcatttcttttattaggttaggaagtgtggggacacgtgg
accatgccacaagagaaactggcactgaactgatgaaatagagcatgttc
aaacccccagacttgtggaagtggaactagcttcctccctgtttctaagt
ctgtcttagagatcataaccaggggaaccccaacagataggcagtcatgt
acccagcatctggaatgcttcttcatgttaatgaggcatctccattgcct
tagctttcagtcaatgatgttttccctccctggttattcttaccctcaaa
ctatttaacatttgtttcatcttgaatagagcatatacattccaacccac
cctgaatgaagaaatatgaacaaactaagaccatctcagaaagctgcttc
attaaagattctcagagaaggcctccttcaccctgctacataccccattc
actcccaactggaccagaatcctgcttgtctgggaccgcacttcaccccc
tcctgggctggaaggcagcaccatttgaaagccccaaagggaagactgta
cctgttcctgacttcatcctgtcctctccaagccaatgtacccggggtgc
ttagacacctcttccataggagggcagacccagaaacaagaaactttcct
gatataattttatgaatgatgacccttctgactgcatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90658412_90659674
seq2: B6Ng01-134J14.b_44_1272

seq1  GAATTCTGGCAGGACAAATCTCTGTTGATGGAATGCTATTAATAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGGACAAATCTCTGTTGATGGAATGCTATTAATAAGAGAC  50

seq1  TAGAAAATGGAGGCTGATCCCCTCAGGAATTTTCACCAACATAGTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGGAGGCTGATCCCCTCAGGAATTTTCACCAACATAGTCCAGG  100

seq1  AATTCAAAACTACTAGACACAGGATCCTCTCACCTGACATAACTGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAACTACTAGACACAGGATCCTCTCACCTGACATAACTGAGCAG  150

seq1  CTACCTGGCTTTCAGTGAGTCAAGCCTTTGAACTTGACTCCATTTTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGCTTTCAGTGAGTCAAGCCTTTGAACTTGACTCCATTTTGATC  200

seq1  AACTAGGATTATCTTCATATAGATGTGCCTGATTTACATGGAACCAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGATTATCTTCATATAGATGTGCCTGATTTACATGGAACCAACTT  250

seq1  GCATGGTTGAAACTGTGTAAATAGAATTTACATCCACAATAACCATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTGAAACTGTGTAAATAGAATTTACATCCACAATAACCATAGAA  300

seq1  ACTGTACATCAGGCATTCAGGATTGTCATCCTTTACATGGAGTGAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACATCAGGCATTCAGGATTGTCATCCTTTACATGGAGTGAATTAT  350

seq1  ATGCTGGGAATCTCAAGAGAAAGACACTTGCCCTTATCATTAAAAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGAATCTCAAGAGAAAGACACTTGCCCTTATCATTAAAAGATTT  400

seq1  CTTTCGCTGAATAGTGGTGGCGCATGCCTTTACATCCCAGCACTTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCTGAATAGTGGTGGCGCATGCCTTTACATCCCAGCACTTGGGAG  450

seq1  GTAGAGCCAGGCAGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCAGGCAGATTTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGTT  500

seq1  AGTTCCAGGACAGCTAGGGCTATAGAGGAACCCTGTCTCAACAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCTAGGGCTATAGAGGAACCCTGTCTCAACAAACAAAA  550

seq1  AACCCAAACAAACAAACAAAAAATGATTTCCCACAAATGAATACTCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACAAACAAACAAAAAATGATTTCCCACAAATGAATACTCCATC  600

seq1  AGCCCATTGTCCTAGCTTGTGTGCCATTTCTCTTATTCCTTCCTACCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTGTCCTAGCTTGTGTGCCATTTCTCTTATTCCTTCCTACCCAG  650

seq1  TTGTTTCTTTGTTTCAAGCCCAGTATAATATCACAAAATATTAAATCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTTGTTTCAAGCCCAGTATAATATCACAAAATATTAAATCATT  700

seq1  CATGAATTCCCAACTATTAAAATGATGTCATGTTTTTAATCACATAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTCCCAACTATTAAAATGATGTCATGTTTTTAATCACATAGCAC  750

seq1  CTATTATTTTCTATCTCCCTCTGGACCTTCATGTTTGCCTTGTGTAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTTCTATCTCCCTCTGGACCTTCATGTTTGCCTTGTGTAGATT  800

seq1  AGATGTCTGATGATTCAGGAACTCACAGTGTTCCTAAAGGGATTTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTGATGATTCAGGAACTCACAGTGTTCCTAAAGGGATTTGATTT  850

seq1  CACATTACTTGATTTTGCCCTTTTCTGTGCTCTCATATTTGTGCTGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTTGATTTTGCCCTTTTCTGTGCTCTCATATTTGTGCTGCCTG  900

seq1  GAACTGGATGCCTGAAGCATTTTGGCTAGATACTCCCAGCATTCCTGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGATGCCTGAAGCATTTTGGCTAGATACTCCCAGCATTCCTGTTA  950

seq1  GGTGTTCCTGCTCCAGAACTTTACTTGGAATCCTAGAAATTCATCATCCT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTGTTCCTGCTCCAGAACTTTACTTGGAATCCTAGAAATTCATCATCCT  999

seq1  TGCTATTGAGTTGAATTGTCTCTCCTCTGACTAGTGGCTTTCT-CTTCAG  1049
      |||| ||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  TGCT-TTGAG-TGAATTGTCTCT-CTCTGACTAGTGGCTTTCTCCTTCAG  1046

seq1  GGCCACTAACATGTGGTCTGAGACATCCTAAGGTCCCTGGCAAAGCATGT  1099
      |  ||||||||||||||||||||||| |||| || ||||   ||||||||
seq2  G--CACTAACATGTGGTCTGAGACAT-CTAA-GTTCCTG--CAAGCATGT  1090

seq1  TTGAAGAGCTACTTGCTTCAAGGCTGTACACCTGGATTCCAGAATGCTCC  1149
      | |||||||||| |||||||  |||||||||||||||  |||||||||||
seq2  TGGAAGAGCTAC-TGCTTCA--GCTGTACACCTGGAT--CAGAATGCTCC  1135

seq1  CTTTCTTATGATAAGGGGCAACAGATCAAGGATCCTCTACAGTGAACTTG  1199
      ||||| ||||||||  ||||||||||||  |||||||   | || || ||
seq2  CTTTC-TATGATAA--GGCAACAGATCA--GATCCTC-CTAATGGACCTG  1179

seq1  AGACTGTTAGAAAACAACTGAGTTAAGAATTGCAGGCTGCAGGGCTGGAA  1249
      | || |||    ||| ||||| |  || |||||| ||  || ||||||| 
seq2  A-ACCGTT----AAC-ACTGAAT--AG-ATTGCA-GCGTCA-GGCTGGAT  1218

seq1  ATATGGCTCACCCA  1263
      |   ||||||||||
seq2  A---GGCTCACCCA  1229

seq1: chr3_90847106_90848156
seq2: B6Ng01-134J14.g_68_1107 (reverse)

seq1  CAGATGCAGTTCAGGAAGGGGTCATCATTTCAATAAAATTATATCAGGAA  50
      ||||||||| ||||  | |||||||||||   ||||||||||||||||||
seq2  CAGATGCAG-TCAG--AAGGGTCATCATT--CATAAAATTATATCAGGAA  45

seq1  AGTTTCCTTGTTTTTCTGGGTTCTGCCCCTCCTATTGGAAGAGGTGTCTA  100
      ||||| ||||  |||||||| |||| |||||||| |||||||||||||||
seq2  AGTTT-CTTG--TTTCTGGG-TCTG-CCCTCCTA-TGGAAGAGGTGTCTA  89

seq1  AGCACCCCGGGTACATTGGCTTGGAGAGGACAGGATGAAGTCAGGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCCGGGTACATTGGCTTGGAGAGGACAGGATGAAGTCAGGAACAG  139

seq1  GTACAGTCTTCCCTTTGGGGCTTTCAAATGGTGCTGCCTTCCAGCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTTCCCTTTGGGGCTTTCAAATGGTGCTGCCTTCCAGCCCAGG  189

seq1  AGGGGGTGAAGTGCGGTCCCAGACAAGCAGGATTCTGGTCCAGTTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGAAGTGCGGTCCCAGACAAGCAGGATTCTGGTCCAGTTGGGAG  239

seq1  TGAATGGGGTATGTAGCAGGGTGAAGGAGGCCTTCTCTGAGAATCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGTATGTAGCAGGGTGAAGGAGGCCTTCTCTGAGAATCTTTAA  289

seq1  TGAAGCAGCTTTCTGAGATGGTCTTAGTTTGTTCATATTTCTTCATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCTTTCTGAGATGGTCTTAGTTTGTTCATATTTCTTCATTCAG  339

seq1  GGTGGGTTGGAATGTATATGCTCTATTCAAGATGAAACAAATGTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTGGAATGTATATGCTCTATTCAAGATGAAACAAATGTTAAATA  389

seq1  GTTTGAGGGTAAGAATAACCAGGGAGGGAAAACATCATTGACTGAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGGTAAGAATAACCAGGGAGGGAAAACATCATTGACTGAAAGCT  439

seq1  AAGGCAATGGAGATGCCTCATTAACATGAAGAAGCATTCCAGATGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATGGAGATGCCTCATTAACATGAAGAAGCATTCCAGATGCTGGG  489

seq1  TACATGACTGCCTATCTGTTGGGGTTCCCCTGGTTATGATCTCTAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACTGCCTATCTGTTGGGGTTCCCCTGGTTATGATCTCTAAGACA  539

seq1  GACTTAGAAACAGGGAGGAAGCTAGTTCCACTTCCACAAGTCTGGGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAAACAGGGAGGAAGCTAGTTCCACTTCCACAAGTCTGGGGGTT  589

seq1  TGAACATGCTCTATTTCATCAGTTCAGTGCCAGTTTCTCTTGTGGCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGCTCTATTTCATCAGTTCAGTGCCAGTTTCTCTTGTGGCATGG  639

seq1  TCCACGTGTCCCCACACTTCCTAACCTAATAAAAGAAATGCCCATCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTGTCCCCACACTTCCTAACCTAATAAAAGAAATGCCCATCCAGG  689

seq1  TAACCTCTAAACATCTTCAAAATGGCACAGAAAGAAAAAAAAAAAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTAAACATCTTCAAAATGGCACAGAAAGAAAAAAAAAAAAAACA  739

seq1  GGGATGAAGATTATAGGCCATTGGCAGTTTTTTTGGGCTGAATTTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAGATTATAGGCCATTGGCAGTTTTTTTGGGCTGAATTTAGAAT  789

seq1  AAATGAATAAATGGACATGGGACAGAAGTAGCAGTGATAACATGGTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATAAATGGACATGGGACAGAAGTAGCAGTGATAACATGGTGAGC  839

seq1  TGGGTCCTGGGAACAGTTTTCTACTTCTTTTCTTCCTCCTCTCCTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGGGAACAGTTTTCTACTTCTTTTCTTCCTCCTCTCCTCTCTT  889

seq1  GAATACCCTAGTGGAGGTATTAAGAAGGGAGCTACCTGAACCCTCAGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCTAGTGGAGGTATTAAGAAGGGAGCTACCTGAACCCTCAGCCC  939

seq1  TCAGATTCCTGAAGCAGATCTGACTCTAGAGCCACAGTTCATCAAATCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCCTGAAGCAGATCTGACTCTAGAGCCACAGTTCATCAAATCCT  989

seq1  CAGGGAACATAATTCCAGGGCACGTTGAAGGTTCCTATTAGGAAGGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACATAATTCCAGGGCACGTTGAAGGTTCCTATTAGGAAGGAATT  1039

seq1  C  1051
      |
seq2  C  1040