BAC Information

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BAC

Clone NameB6Ng01-135A13
Chromosome7 (Build37)3 (Build37)
Map Location 61,379,529 - 61,380,79241,059,634 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A13.bB6Ng01-135A13.g
ACCDH935184DH935185
length1,233999
definitionDH935184|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A13, 5' end.DH935185|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,379,529 - 61,380,792)(41,059,634 - 41,059,737)
sequence
gaattccaggagttctctgctgtacctctctcaatgaagtgaatatcagt
aaggatgggagactcacaaagtactgaacagttagctatgcaagtggtcc
catcacatttcatcaaatctgacttacactttcttgaaatattccatgtc
cttccacaggtcttgccatagcaaaacatcacactagtctgcttcagtaa
aacagcatgggaagctgcatcacatgacacaaacagaatcttctacttca
aataatcaaccaagaaaattatataaaatcattactgacagcagattcaa
caagtttagatattattcagacgtagttttaaaatgcctttatctaaaga
atgcatacgattataaagtaatatttaaaacacaatcaggaatcttaatt
aatgtagaagattgtttcagtgtatgttttcagataggacatgaatgaag
aacagtgattccatgtttaaagataggagttcctggctacaagtgctaat
aaagatggatccaattgacaaaaatctcaacaagctagtgaatgaagaag
caggtcaccaaaaggacagtgaggtaatgaataagaacagttggggagtc
agataggaaaacaaagatgggtgataataccgaaagtgtcacgatttcac
attcagtttgtgaggaaagatggagtagaacaaagtctcacacctcccta
gtgatgccttgctaaaaaaggctggagtcgctcagagaacgcattaagaa
atgtcgaatttagtaggcttcccagtacaaaactgacgttgccgtgcaca
ttgaaaagctattagagaatgacaccagcaaggagttctgtggagtagtg
catcatgaagaatcagacaaccagagtgtgagtgaggacaggcgtgatgg
taggggaacagctatcgattttagcaatccatttctgtgggaatgagagg
agtggaactttaataaaggaaaggaaatgagatacctatcattttagaga
acacatttagcacatgaggctcaggtcagtcaatagattacccaggaaat
ggagagcctcatgttcaataaaccatatttactttcgtacaatttctctg
aaatctgagagtcagattctaggttaatgggagatgtggatggttgaccg
caatgttgtgagactgctacgcagagatttcatcttctaaagacctagat
cttggttctgggatctggggctcaatctgatga
gaattctttgttcagctctgagccccattttttaatggagttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccaattttaattgcatggttaagctactagcaagagatctcaatct
caataattgctttattaaggcacttaataggttcatatactttcctcata
gcactgatttaatatgtctcataaatttggttatgtttcacatttatttt
cattgtattatagaaagccttttagcatctttatttcttccttgactcag
taattactcagtattcgattatttatttttgatgaatttatagactttat
gccctttcagattttgttgtaggccagatttaatatatggtggtctgata
catggagttactgcaattatcttatatctgttgagattcctttgtgactc
actatatgaaaaattttgaagaatgttatgtgaggtgctgcaaagaagtt
ttattatttgagcaaaatattctgtagatatctattaggtttatttgagt
cataatgtcttttacttccattatttctctgcttaattttgtcctgaagc
cttgttcattgcttagagttggggcttgaagtcttccactattaatgtat
ggtctttatgtttgatttaagctttagtaatatttctttcactaatacgg
tttccattttgtctgggttatcaatttttagaattgaaatattatcttgg
tggatttttcctttgatgagtatgaactatccttctctatctcttttgat
tgatgttggttgaaagtttatttagttaggtattaaatggctacagcttg
cttctgagtctatttacttggaaatccattactctgaagtaatttatatc
tttcattttagatgcatttcttgaatgcagcagaaagatggatcctgttt
ttgcatccattcagctagtctgtatattttaatttgaagaattgaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_61379529_61380792
seq2: B6Ng01-135A13.b_47_1279 (reverse)

seq1  TCATCAGACTGAGCCCCAGATTCTCCAGGGACACAAGAATCTCTAGGTCT  50
      |||||||| ||||||||||||   |||  ||  |||||   |||||||||
seq2  TCATCAGATTGAGCCCCAGAT--CCCA--GAACCAAGA---TCTAGGTCT  43

seq1  TCTTATGAAGGAATGAAAAACTC-CTGCGTAAGCAGTCTCACCAACTACT  99
        ||| ||||  ||||||   || |||||| |||||||||| |||| | |
seq2  --TTA-GAAG--ATGAAA---TCTCTGCGT-AGCAGTCTCA-CAAC-ATT  82

seq1  GCGGTCAA-CATCACTATCTCCACTTTAGAACTTAAGAATCTGAACTTCA  148
      |||||||| ||||   ||||||  ||   ||| | |||||||| |||   
seq2  GCGGTCAACCATCCACATCTCCCATT---AACCT-AGAATCTG-ACTCTC  127

seq1  AGATTTCAGAGAATATGTACGAAAGTAAAATATGGTATTATTTGAACATG  198
      |||||||||||||  ||||||||||| ||||||||| ||| |||||||||
seq2  AGATTTCAGAGAAATTGTACGAAAGT-AAATATGGT-TTA-TTGAACATG  174

seq1  AGGGCTCT-CATTTCCTTGGGTAATCTATTGACTGAACCTGGAGCCTCAT  247
      | |||||| ||||||| |||||||||||||||||| |||| |||||||||
seq2  A-GGCTCTCCATTTCC-TGGGTAATCTATTGACTG-ACCT-GAGCCTCAT  220

seq1  TGGTGCTAAATGTGTTCTCTAAAATGATAGGTATTCTTCATTTCCTTTTC  297
        ||||||||||||||||||||||||||||||||   ||||||||||| |
seq2  --GTGCTAAATGTGTTCTCTAAAATGATAGGTAT--CTCATTTCCTTTCC  266

seq1  TTTATTAAAGTTCCACTCCTCTCATTCCCACAGAAATGGATTGCTAAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAGTTCCACTCCTCTCATTCCCACAGAAATGGATTGCTAAAAT  316

seq1  CGATAGCTGTTCCCCTACCATCACGCCTGTCCTCACTCACACTCTGGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGCTGTTCCCCTACCATCACGCCTGTCCTCACTCACACTCTGGTTG  366

seq1  TCTGATTCTTCATGATGCACTACTCCACAGAACTCCTTGCTGGTGTCATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCTTCATGATGCACTACTCCACAGAACTCCTTGCTGGTGTCATT  416

seq1  CTCTAATAGCTTTTCAATGTGCACGGCAACCTCAGTTTTGTACTGGGAAG  497
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCTAATAGCTTTTCAATGTGCACGGCAACGTCAGTTTTGTACTGGGAAG  466

seq1  CCTACTAAATTCGACATTTCTTAATGCGTTCTCTGAGCGACTCCAGCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAAATTCGACATTTCTTAATGCGTTCTCTGAGCGACTCCAGCCTT  516

seq1  TTTTAGCAAGGCATCACTAGGGAGGTGTGAGACTTTGTTCTACTCCATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAAGGCATCACTAGGGAGGTGTGAGACTTTGTTCTACTCCATCT  566

seq1  TTCCTCACAAACTGAATGTGAAATCGTGACACTTTCGGTATTATCACCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACAAACTGAATGTGAAATCGTGACACTTTCGGTATTATCACCCA  616

seq1  TCTTTGTTTTCCTATCTGACTCCCCAACTGTTCTTATTCATTACCTCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTCCTATCTGACTCCCCAACTGTTCTTATTCATTACCTCACT  666

seq1  GTCCTTTTGGTGACCTGCTTCTTCATTCACTAGCTTGTTGAGATTTTTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTGGTGACCTGCTTCTTCATTCACTAGCTTGTTGAGATTTTTGT  716

seq1  CAATTGGATCCATCTTTATTAGCACTTGTAGCCAGGAACTCCTATCTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGATCCATCTTTATTAGCACTTGTAGCCAGGAACTCCTATCTTTA  766

seq1  AACATGGAATCACTGTTCTTCATTCATGTCCTATCTGAAAACATACACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAATCACTGTTCTTCATTCATGTCCTATCTGAAAACATACACTG  816

seq1  AAACAATCTTCTACATTAATTAAGATTCCTGATTGTGTTTTAAATATTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTTCTACATTAATTAAGATTCCTGATTGTGTTTTAAATATTAC  866

seq1  TTTATAATCGTATGCATTCTTTAGATAAAGGCATTTTAAAACTACGTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCGTATGCATTCTTTAGATAAAGGCATTTTAAAACTACGTCTG  916

seq1  AATAATATCTAAACTTGTTGAATCTGCTGTCAGTAATGATTTTATATAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATCTAAACTTGTTGAATCTGCTGTCAGTAATGATTTTATATAAT  966

seq1  TTTCTTGGTTGATTATTTGAAGTAGAAGATTCTGTTTGTGTCATGTGATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTTGATTATTTGAAGTAGAAGATTCTGTTTGTGTCATGTGATG  1016

seq1  CAGCTTCCCATGCTGTTTTACTGAAGCAGACTAGTGTGATGTTTTGCTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCATGCTGTTTTACTGAAGCAGACTAGTGTGATGTTTTGCTAT  1066

seq1  GGCAAGACCTGTGGAAGGACATGGAATATTTCAAGAAAGTGTAAGTCAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACCTGTGGAAGGACATGGAATATTTCAAGAAAGTGTAAGTCAGA  1116

seq1  TTTGATGAAATGTGATGGGACCACTTGCATAGCTAACTGTTCAGTACTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAAATGTGATGGGACCACTTGCATAGCTAACTGTTCAGTACTTT  1166

seq1  GTGAGTCTCCCATCCTTACTGATATTCACTTCATTGAGAGAGGTACAGCA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTCCCATCCTTACTGATATTCACTTCATTGAGAGAGGTACAGCA  1216

seq1  GAGAACTCCTGGAATTC  1264
      |||||||||||||||||
seq2  GAGAACTCCTGGAATTC  1233

seq1: chr3_41059634_41059737
seq2: B6Ng01-135A13.g_69_172 (reverse)

seq1  GATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTC  50

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAG  100
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CAGAAAATCAAATAACTCCATTAAAAAATGGGGCTCAGAGCTGAACAAAG  100

seq1  AATT  104
      ||||
seq2  AATT  104