BAC Information

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BAC

Clone NameB6Ng01-135F21
Chromosome3 (Build37)
Map Location 85,320,231 - 85,479,362
singlet/doubletdoublet
Overlap geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik
Upstream geneArfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135F21.bB6Ng01-135F21.g
ACCDH935422DH935423
length1,0681,136
definitionDH935422|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F21, 5' end.DH935423|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,478,291 - 85,479,362)(85,320,231 - 85,321,389)
sequence
gaattcttaatcattgcaaacctcctccttttatgtgtgaatagtaccta
ctccaaaggactgcccccaaggcacacagggctcttaggaggctttctca
gcgtggagccactgctcaggaactattcccagggatagttcaatgaaatg
tataagaaaggtgacactaacaggagaatggtaaacaaaggggcatgggc
ttcgtctatactcctaaagactcaagcctgacccagtcaggtagagattt
attatgaaggagcacagagctcacaaagacatggcactggagtgtggaga
gggtccagagcaggccagtgcttgaatcacccatgaccctgccacagctg
gggtgggtgttcttctatctgtgagcacgtgagggaaacatgtctatcag
ataggatcattaacttctatgccagtgataaagctcttacaatatctgag
atgtttagggggtggtggaaggcatagtgttctctaagtcagtcttttct
aaacatttcctttgctgggaaattacaaactttaaaacaggtgctttcac
aactatttcagtaatgctattgaaatttgtaatatgaagtcagtcgcctt
caaacacaggccactttctctgttttggcttgactgtgacttgacttcaa
gagagcgtctgctgtgtgtctacatcctgagtgttgccaacaaagtgcag
tgagttaattgtctttcctggaagcccaggattttcctaccagaaaatct
ggttatcaaacttatgatcatcagcctttcactttattatcaagaccaaa
attaaaattaagatgcttttaagttatcatacaatgtggcaggcaccaca
ttgggaatgttaccttccttgtccatggagatggccttcattggctctca
tttctccaggactagtattagaggaaggcagggctccctccttttttacg
ttgcctagtcttgtaataagatgaatttggaaatggactcgggagaaatg
taaagacattttaataaaattgagagagaaacaccaagaatagcaagcta
taatcttggaatcgccgg
gaattcaaaacgcaactctgtgttgttatagatgaagccaatagagacag
taagagaaaggagagcataggaccaagaccagtgcttaaaggcaaacatg
ttcattttctcagagaaccgtgactgcacacctcggggagactggctacc
cctaatcccctgcagcaacagcagcagcagcagccgcagcagcagccgca
gttgcacagatgccagcatgggaagggcacagtttccctatagtcaagcc
gagactcttcaagagccttcatctgtcgccacttctgtctctagcccacc
tctccctctctctgacccatgagacactaagaaaagggtgaggtggaaca
acagtgtgcagacagtgctcaccatccactgggctgaaggcagccacaac
accacttaacatgagccttgaaagcattgaactgggcaagaaaactcgaa
aaatcatttctctgtctcaagtgaattctcccctactcggtgtgttgcag
gtgaagaactgggttcttcagctggccacacctcactctctaatctccac
ccccccaactctcccaccccatgaagggcctgaacatcattgagaagtat
gcaaacaccagcagtatttgtacatctgggtaatacatcaagtatcagga
ggtgtctccaggcatgagttacaaggcctctaaaagcaatgagtctttta
tggggttgtagataatggtgattttccgtaaatcctgccagagccacaca
ataggccaagagcaattaacattaattaaatgatccccataaagaggttg
ctttgctgacacgttgataacctctaaatgctcttagcgggttcacattc
ttaaaggtgtctctatagccgtaccagggactccgaaggcttctgttgcc
cagacggtgcacacacgagcgctccactcagctgcaaagacagtcttagg
catccagtcagcacacgaaaggggtgcttagactcagagacatgtgaaca
aggttctgatttggtagatcaggggcctgggagtctgaatttttacagtt
ctttactggggatactagcttgtctactcagccaacacttgtaagccatc
tgcacagaagttggcaaggccttcttagctgctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85478291_85479362
seq2: B6Ng01-135F21.b_45_1112 (reverse)

seq1  CCGGCGACTCCCAAGACTTATAGCTTGCCTATCTTGGTGTTTCTCTCTCA  50
      ||||||| | |||||| |||||||||||   |||||||||||||||||| 
seq2  CCGGCGA-TTCCAAGA-TTATAGCTTGCTATTCTTGGTGTTTCTCTCTC-  47

seq1  AATTTTATTAAAATTGTCTTTACATTTCCTCCGGAGTCCATTTCCAAATT  100
      ||||||||||||| ||||||||||||| |||| |||||||||||||||||
seq2  AATTTTATTAAAA-TGTCTTTACATTT-CTCCCGAGTCCATTTCCAAATT  95

seq1  CATCTATTAACAAGACTAGGC-ACGT-AAAAAGGAGGGAGCCCTGCCTTC  148
      |||||  | |||||||||||| |||| |||||||||||||||||||||| 
seq2  CATCTTATTACAAGACTAGGCAACGTAAAAAAGGAGGGAGCCCTGCCTT-  144

seq1  CCTCTAATACTAGTCCCTGGAGAAATGAGAGCCAATGAAGGCCATCTCCC  198
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  CCTCTAATACTAGT-CCTGGAGAAATGAGAGCCAATGAAGGCCATCTCCA  193

seq1  TGGACAAGG-AGGTAACATTCCCAATGTGGTGCCTGCCACATTGTATGAT  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGAAGGTAACATTCCCAATGTGGTGCCTGCCACATTGTATGAT  243

seq1  AACTTAAAAGCATCTTAATTTTAATTTTGGTCTTGATAATAAAGTGAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAGCATCTTAATTTTAATTTTGGTCTTGATAATAAAGTGAAAG  293

seq1  GCTGATGATCATAAGTTTGATAACCAGATTTTCTGGTAGGAAAATCCTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGATCATAAGTTTGATAACCAGATTTTCTGGTAGGAAAATCCTGG  343

seq1  GCTTCCAGGAAAGACAATTAACTCACTGCACTTTGTTGGCAACACTCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGGAAAGACAATTAACTCACTGCACTTTGTTGGCAACACTCAGG  393

seq1  ATGTAGACACACAGCAGACGCTCTCTTGAAGTCAAGTCACAGTCAAGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACACACAGCAGACGCTCTCTTGAAGTCAAGTCACAGTCAAGCCA  443

seq1  AAACAGAGAAAGTGGCCTGTGTTTGAAGGCGACTGACTTCATATTACAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAAAGTGGCCTGTGTTTGAAGGCGACTGACTTCATATTACAAA  493

seq1  TTTCAATAGCATTACTGAAATAGTTGTGAAAGCACCTGTTTTAAAGTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAGCATTACTGAAATAGTTGTGAAAGCACCTGTTTTAAAGTTTG  543

seq1  TAATTTCCCAGCAAAGGAAATGTTTAGAAAAGACTGACTTAGAGAACACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCCAGCAAAGGAAATGTTTAGAAAAGACTGACTTAGAGAACACT  593

seq1  ATGCCTTCCACCACCCCCTAAACATCTCAGATATTGTAAGAGCTTTATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCCACCACCCCCTAAACATCTCAGATATTGTAAGAGCTTTATCA  643

seq1  CTGGCATAGAAGTTAATGATCCTATCTGATAGACATGTTTCCCTCACGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATAGAAGTTAATGATCCTATCTGATAGACATGTTTCCCTCACGTG  693

seq1  CTCACAGATAGAAGAACACCCACCCCAGCTGTGGCAGGGTCATGGGTGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGATAGAAGAACACCCACCCCAGCTGTGGCAGGGTCATGGGTGAT  743

seq1  TCAAGCACTGGCCTGCTCTGGACCCTCTCCACACTCCAGTGCCATGTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACTGGCCTGCTCTGGACCCTCTCCACACTCCAGTGCCATGTCTT  793

seq1  TGTGAGCTCTGTGCTCCTTCATAATAAATCTCTACCTGACTGGGTCAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTCTGTGCTCCTTCATAATAAATCTCTACCTGACTGGGTCAGGC  843

seq1  TTGAGTCTTTAGGAGTATAGACGAAGCCCATGCCCCTTTGTTTACCATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTTTAGGAGTATAGACGAAGCCCATGCCCCTTTGTTTACCATTC  893

seq1  TCCTGTTAGTGTCACCTTTCTTATACATTTCATTGAACTATCCCTGGGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTAGTGTCACCTTTCTTATACATTTCATTGAACTATCCCTGGGAA  943

seq1  TAGTTCCTGAGCAGTGGCTCCACGCTGAGAAAGCCTCCTAAGAGCCCTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTGAGCAGTGGCTCCACGCTGAGAAAGCCTCCTAAGAGCCCTGT  993

seq1  GTGCCTTGGGGGCAGTCCTTTGGAGTAGGTACTATTCACACATAAAAGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGGGGGCAGTCCTTTGGAGTAGGTACTATTCACACATAAAAGGA  1043

seq1  GGAGGTTTGCAATGATTAAGAATTC  1072
      |||||||||||||||||||||||||
seq2  GGAGGTTTGCAATGATTAAGAATTC  1068

seq1: chr3_85320231_85321389
seq2: B6Ng01-135F21.g_68_1203

seq1  GAATTCAAAACGCAACTCTGTGTTGTTATAGATGAAGCCAATAGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACGCAACTCTGTGTTGTTATAGATGAAGCCAATAGAGACAG  50

seq1  TAAGAGAAAGGAGAGCATAGGACCAAGACCAGTGCTTAAAGGCAAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGGAGAGCATAGGACCAAGACCAGTGCTTAAAGGCAAACATG  100

seq1  TTCATTTTCTCAGAGAACCGTGACTGCACACCTCGGGGAGACTGGCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTCAGAGAACCGTGACTGCACACCTCGGGGAGACTGGCTACC  150

seq1  CCTAATCCCCTGCAGCAACAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCCCTGCAGCAACAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCA  200

seq1  GTTGCACAGATGCCAGCATGGGAAGGGCACAGTTTCCCTATAGTCAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGATGCCAGCATGGGAAGGGCACAGTTTCCCTATAGTCAAGCC  250

seq1  GAGACTCTTCAAGAGCCTTCATCTGTCGCCACTTCTGTCTCTAGCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTTCAAGAGCCTTCATCTGTCGCCACTTCTGTCTCTAGCCCACC  300

seq1  TCTCCCTCTCTCTGACCCATGAGACACTAAGAAAAGGGTGAGGTGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCTCTGACCCATGAGACACTAAGAAAAGGGTGAGGTGGAACA  350

seq1  ACAGTGTGCAGACAGTGCTCACCATCCACTGGGCTGAAGGCAGCCACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGCAGACAGTGCTCACCATCCACTGGGCTGAAGGCAGCCACAAC  400

seq1  ACCACTTAACATGAGCCTTGAAAGCATTGAACTGGGCAAGAAAACTCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTAACATGAGCCTTGAAAGCATTGAACTGGGCAAGAAAACTCGAA  450

seq1  AAATCATTTCTCTGTCTCAAGTGAATTCTCCCCTACTCGGTGTGTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTCTCTGTCTCAAGTGAATTCTCCCCTACTCGGTGTGTTGCAG  500

seq1  GTGAAGAACTGGGTTCTTCAGCTGGCCACACCTCACTCTCTAATCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACTGGGTTCTTCAGCTGGCCACACCTCACTCTCTAATCTCCAC  550

seq1  CCCCCCAACTCTCCCACCCCATGAAGGGCCTGAACATCATTGAGAAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAACTCTCCCACCCCATGAAGGGCCTGAACATCATTGAGAAGTAT  600

seq1  GCAAACACCAGCAGTATTTGTACATCTGGGTAATACATCAAGTATCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACCAGCAGTATTTGTACATCTGGGTAATACATCAAGTATCAGGA  650

seq1  GGTGTCTCCAGGCATGAGTTACAAGGCCTCTAAAAGCAATGAGTCTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCCAGGCATGAGTTACAAGGCCTCTAAAAGCAATGAGTCTTTTA  700

seq1  TGGGGTTGTAGATAATGGTGATTTTCCGTAAATCCTGCCAGAGCCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGTAGATAATGGTGATTTTCCGTAAATCCTGCCAGAGCCACACA  750

seq1  ATAGGCCAAGAGCAATTAACATTAATTAAATGATCCCCATAAAGAGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCAAGAGCAATTAACATTAATTAAATGATCCCCATAAAGAGGTTG  800

seq1  CTTTGCTGACACGTTGATAACCTCTAAATGCTCTTAGCGGGTTCACATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGACACGTTGATAACCTCTAAATGCTCTTAGCGGGTTCACATTC  850

seq1  TTAAAGGTGTCTCTATAGCCGTACCAGGGACTCCGAAGGCTTCTGTTGCC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAAAGGTGTCTCTATAGCCGTACCAGGGACTCCGAAGGCTTCTGTTG-C  899

seq1  CCAGACGGTTGCACACACGAGCGCTCCACTCAGCTGCAAAGACAGTCCTA  950
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGACGG-TGCACACACGAGCGCTCCACTCAGCTGCAAAGACAGTCTTA  948

seq1  AGGGCATCCAGTCAGCACACGAAAGGTGTGCCTAAGACTCCAGAGACAAT  1000
        |||||||||||||||||||||||| ||| || ||||| ||||||| ||
seq2  --GGCATCCAGTCAGCACACGAAAGGGGTG-CTTAGACT-CAGAGAC-AT  993

seq1  GTTGAAACAAGGTTCTGATTTGGTAGATCAAGGGGCCTGGGAGTCTGAAT  1050
      ||   |||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GT--GAACAAGGTTCTGATTTGGTAGATC-AGGGGCCTGGGAGTCTGAA-  1039

seq1  TTTTTACAAGTTCCTTTACTGGGGATACTAGCCTGTTCTACTCAGCCAAA  1100
      ||||||| |||| ||||||||||||||||||| || ||||||||||| ||
seq2  TTTTTAC-AGTT-CTTTACTGGGGATACTAGCTTG-TCTACTCAGCC-AA  1085

seq1  CACTTTGAAAAGCAATTCTGCACAGAAGTTTTGCAAACAGCCCTTCTTAG  1150
      |||||    |||| | |||||||||||| || |||   || |||||||||
seq2  CACTT--GTAAGCCA-TCTGCACAGAAG-TTGGCA---AGGCCTTCTTAG  1128

seq1  CTGCCTAGA  1159
      ||| |||||
seq2  CTG-CTAGA  1136