BAC Information

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BAC

Clone NameB6Ng01-136F02
Chromosome3 (Build37)
Map Location 93,891,721 - 94,006,865
singlet/doubletdoublet
Overlap geneLOC433624, LOC668367, LOC433625, LOC100043188, EG383977
Upstream geneCrnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761
Downstream geneEG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F02.bB6Ng01-136F02.g
ACCDH936120DH936121
length1,203360
definitionDH936120|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F02, 5' end.DH936121|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,891,721 - 93,892,753)(94,006,506 - 94,006,865)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatttattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgcattgcagaaactttgcagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaattttttcccctgtgcccatatcttcgaggcttctcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaattcg
cattcttctacatgataccaaacagttgtgccaacaccatttgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcgaagatcaaa
tgaccatgggtgtgtgggttcatctctgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagattttatcacaattg
ctctgtagtaaagctttaggtcaagcatggtgattccaccagaaatttaa
aaaaataaaaaaataaaatcagaagactggttcatgatgataatgtgtga
agtcctggaaacaaaaacagcatctgctttcctccaagttctgatttgga
accatatgtggcaatggacaactgagagaggagccagtttccacagtaac
taaattacagccatagttcaggtgtgccccctagcattccatttccacac
ttactgatgagtcccttggtagtgcttggcatcacagctatgtgggtagg
catagggacaggtttgacttcctctgtagtcatgggctccatgctgctgc
tctctgcctcagcagagacatccttcccacccctttgcttgatagtgcct
gtgtagcttctgtgtcttctcccagtagcccatggaagacgcccacagca
tcccctggaataagttaaagtgaattggttcaaatggcagtatttcccag
ctctcctgggtgctgaatgggtctgatgtggtcctgagaaacctttagag
catgagtgtaagctccccgaacccctgtcagcacacctagggaagaaggt
ccc
ataaaacactgggaatttagcagagggaggaaagcccttcaggagtcatc
aaaactagggacttgtgcaatttggtcatctgtagtgcaggggtgagtga
ctcagttgcccacagctatgatgggcgcttatgagtgtttcctttgccta
gaactatgctccttatgtgttagtattttcagtgagaactctagtaaaca
cattaagtacgtatcggtactttcttactcataagcttctgctgtgtttt
tgaactatccaacccttcaaagtttcccttgcacttaaccaaaatggccc
tgaaggttgtctggagctttgaagacaaagatggcagtggcgggggtggg
tgggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93891721_93892753
seq2: B6Ng01-136F02.b_214_1246

seq1  CTTTTGCATTGCAGAAACTTTGCAGTTTCATGAGGTCCCATTTGTCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATTGCAGAAACTTTGCAGTTTCATGAGGTCCCATTTGTCAATT  50

seq1  CTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTTCCC  100

seq1  CTGTGCCCATATCTTCGAGGCTTCTCCCCACTTTCTCCTCTATAAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCATATCTTCGAGGCTTCTCCCCACTTTCTCCTCTATAAGTTTC  150

seq1  AGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTT  200

seq1  AGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGATACCA  250

seq1  AACAGTTGTGCCAACACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGTGCCAACACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGG  300

seq1  ATGGTTTTAGCTCCCTTGTCGAAGATCAAATGACCATGGGTGTGTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAGCTCCCTTGTCGAAGATCAAATGACCATGGGTGTGTGGGTT  350

seq1  CATCTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTAT  400

seq1  ACCAGTACCATGCAGATTTTATCACAATTGCTCTGTAGTAAAGCTTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCATGCAGATTTTATCACAATTGCTCTGTAGTAAAGCTTTAGG  450

seq1  TCAAGCATGGTGATTCCACCAGAAATTTAAAAAAATAAAAAAATAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATGGTGATTCCACCAGAAATTTAAAAAAATAAAAAAATAAAATC  500

seq1  AGAAGACTGGTTCATGATGATAATGTGTGAAGTCCTGGAAACAAAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTGGTTCATGATGATAATGTGTGAAGTCCTGGAAACAAAAACAG  550

seq1  CATCTGCTTTCCTCCAAGTTCTGATTTGGAACCATATGTGGCAATGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTTCCTCCAAGTTCTGATTTGGAACCATATGTGGCAATGGACA  600

seq1  ACTGAGAGAGGAGCCAGTTTCCACAGTAACTAAATTACAGCCATAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGAGGAGCCAGTTTCCACAGTAACTAAATTACAGCCATAGTTCA  650

seq1  GGTGTGCCCCCTAGCATTCCATTTCCACACTTACTGATGAGTCCCTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCCCCTAGCATTCCATTTCCACACTTACTGATGAGTCCCTTGGT  700

seq1  AGTGCTTGGCATCACAGCTATGTGGGTAGGCATAGGGACAGGTTTGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGCATCACAGCTATGTGGGTAGGCATAGGGACAGGTTTGACTT  750

seq1  CCTCTGTAGTCATGGGCTCCATGCTGCTGCTCTCTGCCTCAGCAGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGTCATGGGCTCCATGCTGCTGCTCTCTGCCTCAGCAGAGACA  800

seq1  TCCTTCCCACCCCTTTGCTTGATAGTGCCTGTGTAGCCTTCTGTGTCTTC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCTTCCCACCCCTTTGCTTGATAGTGCCTGTGTAG-CTTCTGTGTCTTC  849

seq1  TCCCCAGTAGCCCATGGAAGACGCCCACAGCATCCCCT-GAAT-AGTTAA  898
      | |||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  T-CCCAGTAGCCCATGGAAGACGCCCACAGCATCCCCTGGAATAAGTTAA  898

seq1  AGTGAATGTGTCCAAATGGCAGTATTTCCCAGCT-TCTCTGGTGCTGAAT  947
      |||||||  || |||||||||||||||||||||| ||   ||||||||||
seq2  AGTGAATTGGTTCAAATGGCAGTATTTCCCAGCTCTCCTGGGTGCTGAAT  948

seq1  -GGTCTGTATGTGGTCATGAG-AACCATTAGAGCATGA-TGTAAAGCTCC  994
       |||||| |||||||| |||| |||| ||||||||||| ||| |||||||
seq2  GGGTCTG-ATGTGGTCCTGAGAAACCTTTAGAGCATGAGTGT-AAGCTCC  996

seq1  CACGACCACTGTCAGCAGCATCTAGGGAAAGAAGGTCCC  1033
      |   ||| ||||||||| || |||||| |||||||||||
seq2  CCGAACCCCTGTCAGCA-CACCTAGGG-AAGAAGGTCCC  1033

seq1: chr3_94006506_94006865
seq2: B6Ng01-136F02.g_73_432 (reverse)

seq1  CACCCACCCACCCACCCCCGCCACTGCCATCTTTGTCTTCAAAGCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCACCCACCCCCGCCACTGCCATCTTTGTCTTCAAAGCTCCAG  50

seq1  ACAACCTTCAGGGCCATTTTGGTTAAGTGCAAGGGAAACTTTGAAGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTCAGGGCCATTTTGGTTAAGTGCAAGGGAAACTTTGAAGGGTT  100

seq1  GGATAGTTCAAAAACACAGCAGAAGCTTATGAGTAAGAAAGTACCGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTCAAAAACACAGCAGAAGCTTATGAGTAAGAAAGTACCGATAC  150

seq1  GTACTTAATGTGTTTACTAGAGTTCTCACTGAAAATACTAACACATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAATGTGTTTACTAGAGTTCTCACTGAAAATACTAACACATAAGG  200

seq1  AGCATAGTTCTAGGCAAAGGAAACACTCATAAGCGCCCATCATAGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTCTAGGCAAAGGAAACACTCATAAGCGCCCATCATAGCTGTG  250

seq1  GGCAACTGAGTCACTCACCCCTGCACTACAGATGACCAAATTGCACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGAGTCACTCACCCCTGCACTACAGATGACCAAATTGCACAAGT  300

seq1  CCCTAGTTTTGATGACTCCTGAAGGGCTTTCCTCCCTCTGCTAAATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTTTGATGACTCCTGAAGGGCTTTCCTCCCTCTGCTAAATTCCC  350

seq1  AGTGTTTTAT  360
      ||||||||||
seq2  AGTGTTTTAT  360