BAC Information

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BAC

Clone NameB6Ng01-136N19
Chromosome3 (Build37)
Map Location 85,971,411 - 86,132,031
singlet/doubletdoublet
Overlap geneLOC634201, Lrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136N19.bB6Ng01-136N19.g
ACCDH936525DH936526
length1,204987
definitionDH936525|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N19, 5' end.DH936526|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,971,411 - 85,972,625)(86,130,894 - 86,132,031)
sequence
gaattcccacgtgcacaccaaaaattctgtcactaaggctggggcatact
gcagggttagagtgctcactcagaatccacaaaatcctggattccttcct
tccccagcactgccatggtaaaaataagcaaatctgatgctgtccacaag
ggaggagcagataattgagagcagtcaccttctagctccctagttaagtt
ttatgaaaatgtccttggctggcctggaactcactctatagccacagaga
tttaccggcctctgctttctaaaggaatgtcctaccacatggggcagaaa
attatttctaatagctatctatcaaaatatgtttatgacatatcaataag
gattatgtacatgccttttttttaagacagggtttctctgtgtatcctcg
gctattctggaaccagctctgtagatcaggctggccttgaactcacagag
atctgtctgcctctacctcccaagtgctgggattaaaggcatgtgccacc
accgcccagctatgaaatttttttcttagtgctcacagagtttatgcatc
tatcagcatgtggaacactataataaatgaattaaatgtactgcaaaatt
tagagactggcagccagacatgacaatgccaacccatgttctcagcactt
gaaaagttcttcaagaccagctgtagctgcatagtgagtccaaggcctgt
cggggctgcatgagaccctgtctcaaaaacaaaacaaaaaatgctgaccc
caaggattagagcaaggggaagttgcctttgacaagagggaaattgaaca
aagaatgactgtaaagaaaaggcatgactctgttcacctatatatctatt
tataaggagataagattaaagaaaatacacgccctttctcagcttaagca
tcccaggccttgaactactgatcctcctgccttcacttatcaaatgctgg
gattacgggcatgtgccatcacactatttgagtgtcttcccttaaatgca
caatctctttcctattcaaatgtagcttttgcatcttatgcatttgtttt
attacaatagattttttactatcaattaagatttgtatttttctcagaat
gtttttctagggtgtattactttattcacctcaaagaaaccttttatttt
aagatctcacagctctggaaaccgaaattggcagtatgactgactagttc
cagc
gaattctacagactaattgtctgtaaaaagaaagatgggggaggtgggga
agagggacaaaccaggccaggcttgttagtacatgccttcaatcccagca
ctcacaagacaaaggcaggttggtctataagttccaggccagcctgttct
acagaaggacaggtagggcttgtgtgaaaccctattcccaatgtggggct
gggggctggacccaagccatagttatctataatacatccaaagcagtttt
aacaatgtggtaataaaaattctagctcttgtgtgttatttcctcacact
tataaagaggaatttttctaagacaaactggaatcacccaaaagtcgaca
tgaatactgtaaatagctgctttctgttccagcttacctcctgttttctc
tactgttattaaaaagtttaatcatgtcagaaagaaatgctcggcgaacc
tccatgctctctgggcactggggagaatttcgaagtagggtcgcaattac
ttttagtatctctgtaagacagttcataaataagtaaaaaccaaacacaa
caaaaaaattcatgaaggtagattaatataaatgatttcttgagctttcc
tttataaatgtctactaaaaacatcttgtaaaacttggggaaacatgctg
acttaacacttattttagagaagttgtaagtttatagaaaggagccaata
tttgttcaacaggacaatgacttaatgtcaagctgattgtctcccctcca
acaaatgaccttgacatggtgaagcaggtgcctgagctacacccagccag
ttaccatttacacagtccaaacaatacactcaagttataaattaacaaaa
tgtttagtctctgccaaagagtaaaactgagcataaacaaaaattcccac
catattcaaaatcttaggagaaagataaattcttattctaaataaatgta
ttgcatatagacagcctttccttatgaataaaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85971411_85972625
seq2: B6Ng01-136N19.b_50_1253

seq1  GAATTCCCACGTGCACACCAAAAATTCTGTCACTAAGGCTGGGGCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACGTGCACACCAAAAATTCTGTCACTAAGGCTGGGGCATACT  50

seq1  GCAGGGTTAGAGTGCTCACTCAGAATCCACAAAATCCTGGATTCCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTAGAGTGCTCACTCAGAATCCACAAAATCCTGGATTCCTTCCT  100

seq1  TCCCCAGCACTGCCATGGTAAAAATAAGCAAATCTGATGCTGTCCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACTGCCATGGTAAAAATAAGCAAATCTGATGCTGTCCACAAG  150

seq1  GGAGGAGCAGATAATTGAGAGCAGTCACCTTCTAGCTCCCTAGTTAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCAGATAATTGAGAGCAGTCACCTTCTAGCTCCCTAGTTAAGTT  200

seq1  TTATGAAAATGTCCTTGGCTGGCCTGGAACTCACTCTATAGCCACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAATGTCCTTGGCTGGCCTGGAACTCACTCTATAGCCACAGAGA  250

seq1  TTTACCGGCCTCTGCTTTCTAAAGGAATGTCCTACCACATGGGGCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGGCCTCTGCTTTCTAAAGGAATGTCCTACCACATGGGGCAGAAA  300

seq1  ATTATTTCTAATAGCTATCTATCAAAATATGTTTATGACATATCAATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTAATAGCTATCTATCAAAATATGTTTATGACATATCAATAAG  350

seq1  GATTATGTACATGCCTTTTTTTTAAGACAGGGTTTCTCTGTGTATCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTACATGCCTTTTTTTTAAGACAGGGTTTCTCTGTGTATCCTCG  400

seq1  GCTATTCTGGAACCAGCTCTGTAGATCAGGCTGGCCTTGAACTCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCTGGAACCAGCTCTGTAGATCAGGCTGGCCTTGAACTCACAGAG  450

seq1  ATCTGTCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACC  500

seq1  ACCGCCCAGCTATGAAATTTTTTTCTTAGTGCTCACAGAGTTTATGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCAGCTATGAAATTTTTTTCTTAGTGCTCACAGAGTTTATGCATC  550

seq1  TATCAGCATGTGGAACACTATAATAAATGAATTAAATGTACTGCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCATGTGGAACACTATAATAAATGAATTAAATGTACTGCAAAATT  600

seq1  TAGAGACTGGCAGCCAGACATGACAATGCCAACCCATGTTCTCAGCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGGCAGCCAGACATGACAATGCCAACCCATGTTCTCAGCACTT  650

seq1  GAAAAGTTCTTCAAGACCAGCTGTAGCTGCATAGTGAGTCCAAGGCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCTTCAAGACCAGCTGTAGCTGCATAGTGAGTCCAAGGCCTGT  700

seq1  CGGGGCTGCATGAGACCCTGTCTCAAAAACAAAACAAAAAATGCTGACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTGCATGAGACCCTGTCTCAAAAACAAAACAAAAAATGCTGACCC  750

seq1  CAAGGATTAGAGCAAGGGGAAGTTGCCTTTGACAAGAGGGAAATTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTAGAGCAAGGGGAAGTTGCCTTTGACAAGAGGGAAATTGAACA  800

seq1  AAGAATGACTGTAAAGAAAAGGCATGACTCTGTTCACCTATATATCTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGACTGTAAAGAAAAGGCATGACTCTGTTCACCTATATATCTATT  850

seq1  TATAAGGAGATAAGATTAAAGAAAATACAGGCCCTTTCTCAGGCTTAAGC  900
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TATAAGGAGATAAGATTAAAGAAAATACACGCCCTTTCTCA-GCTTAAGC  899

seq1  ATCCCAGGCCTTGAACTACTGATCCTCCTGCCTTCACTTATCAAATGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGCCTTGAACTACTGATCCTCCTGCCTTCACTTATCAAATGCTG  949

seq1  GGATTACGGGCATGTGCCATCACACTATTTGAGTGTCTTCCCTTAAATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACGGGCATGTGCCATCACACTATTTGAGTGTCTTCCCTTAAATGC  999

seq1  ACAATTCTCTTTCCTATTCAAATGGTAGCTTTTGCATC-TATGCATTTGT  1049
      |||| |||||||||||||||||| |||||||||||||| |||||||||||
seq2  ACAA-TCTCTTTCCTATTCAAAT-GTAGCTTTTGCATCTTATGCATTTGT  1047

seq1  ATTTATTACAATAAGATTTTTTTACTAATCAATT-AGATATGTA-TTTTC  1097
       ||||||||||| ||| ||||||||| ||||||| |||| |||| |||||
seq2  -TTTATTACAAT-AGA-TTTTTTACT-ATCAATTAAGATTTGTATTTTTC  1093

seq1  TCAGAAGTGTTATCTAGGTGTGTAGTGACCTTTATCCACTCAAAAGATAC  1147
      ||||||   || |||||| ||||| |   |||||| |||   ||||| ||
seq2  TCAGAATGTTTTTCTAGG-GTGTATT--ACTTTATTCACCTCAAAGAAAC  1140

seq1  --TTTATTTTAAGATCTCCACAGCTCT-GAGACTGTAATTTGCAGTTAAT  1194
        ||||||||||||||| ||||||||| || || | |||| |||||    
seq2  CTTTTATTTTAAGATCT-CACAGCTCTGGAAACCGAAATTGGCAGT---A  1186

seq1  TGACCTGACTTAAGTTCCAGC  1215
      ||| ||||||  |||||||||
seq2  TGA-CTGACT--AGTTCCAGC  1204

seq1: chr3_86130894_86132031
seq2: B6Ng01-136N19.g_68_1185 (reverse)

seq1  TCACAGCTCACTTGGGCCTGGAGA-GAGAAGAACACTGACTCTTCTCTCA  49
      |||||| ||||||||  || |||| |||||||||| ||||||||||||||
seq2  TCACAG-TCACTTGG--CT-GAGAGGAGAAGAACA-TGACTCTTCTCTCA  45

seq1  GAGGGCCCAACTTTGAAGACGAT-ACAC-AGTGTCTACATTCTGCCATGG  97
      |||||||||   ||||||||||| |||| |||||||||| |||||||| |
seq2  GAGGGCCCA--CTTGAAGACGATAACACAAGTGTCTACA-TCTGCCAT-G  91

seq1  CATCCTTCAGCATGCTTGAATGTGTTTTTATTTTTTTTTATAGTTTTAAA  147
      ||||  ||||||||| ||||    ||||                   |||
seq2  CATC--TCAGCATGC-TGAA----TTTTNNNNNNNNNNNNNNNNNNNAAA  134

seq1  ATTTTATTTCATAAAGGAAAGGCTGTCTATATGCAATACATTTTATTTTA  197
      |||||| ||||| ||||||||||||||||||||||||||||||   ||||
seq2  ATTTTA-TTCAT-AAGGAAAGGCTGTCTATATGCAATACATTT--ATTTA  180

seq1  GAATAAGAATTTATCTTTTCTCCTTAAGATTTTGAATATGGTGGGAATTT  247
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GAATAAGAATTTATC-TTTCTCC-TAAGATTTTGAATATGGTGGGAATTT  228

seq1  TTGTTTTATGCTCAGTTTTACTCTTTGGCAGAGACTAAACATTTTGTTAA  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTATGCTCAGTTTTACTCTTTGGCAGAGACTAAACATTTTGTTAA  277

seq1  TTTATAACTTGAGTGTATTGTTTGGACTGTGTAAATGGTAACTGGCTGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTTGAGTGTATTGTTTGGACTGTGTAAATGGTAACTGGCTGGG  327

seq1  TGTAGCTCAGGCACCTGCTTCACCATGTCAAGGTCATTTGTTGGAGGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCAGGCACCTGCTTCACCATGTCAAGGTCATTTGTTGGAGGGGA  377

seq1  GACAATCAGCTTGACATTAAGTCATTGTCCTGTTGAACAAATATTGGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCAGCTTGACATTAAGTCATTGTCCTGTTGAACAAATATTGGCTC  427

seq1  CTTTCTATAAACTTACAACTTCTCTAAAATAAGTGTTAAGTCAGCATGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATAAACTTACAACTTCTCTAAAATAAGTGTTAAGTCAGCATGTT  477

seq1  TCCCCAAGTTTTACAAGATGTTTTTAGTAGACATTTATAAAGGAAAGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGTTTTACAAGATGTTTTTAGTAGACATTTATAAAGGAAAGCTC  527

seq1  AAGAAATCATTTATATTAATCTACCTTCATGAATTTTTTTGTTGTGTTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCATTTATATTAATCTACCTTCATGAATTTTTTTGTTGTGTTTG  577

seq1  GTTTTTACTTATTTATGAACTGTCTTACAGAGATACTAAAAGTAATTGCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACTTATTTATGAACTGTCTTACAGAGATACTAAAAGTAATTGCG  627

seq1  ACCCTACTTCGAAATTCTCCCCAGTGCCCAGAGAGCATGGAGGTTCGCCG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACTTCGAAATTCTCCCCAGTGCCCAGAGAGCATGGAGGTTCGCCG  677

seq1  AGCATTTCTTTCTGACATGATTAAACTTTTTAATAACAGTAGAGAAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTTTCTGACATGATTAAACTTTTTAATAACAGTAGAGAAAACA  727

seq1  GGAGGTAAGCTGGAACAGAAAGCAGCTATTTACAGTATTCATGTCGACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGCTGGAACAGAAAGCAGCTATTTACAGTATTCATGTCGACTT  777

seq1  TTGGGTGATTCCAGTTTGTCTTAGAAAAATTCCTCTTTATAAGTGTGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATTCCAGTTTGTCTTAGAAAAATTCCTCTTTATAAGTGTGAGG  827

seq1  AAATAACACACAAGAGCTAGAATTTTTATTACCACATTGTTAAAACTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACACAAGAGCTAGAATTTTTATTACCACATTGTTAAAACTGCT  877

seq1  TTGGATGTATTATAGATAACTATGGCTTGGGTCCAGCCCCCAGCCCCACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTATTATAGATAACTATGGCTTGGGTCCAGCCCCCAGCCCCACA  927

seq1  TTGGGAATAGGGTTTCACACAAGCCCTACCTGTCCTTCTGTAGAACAGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATAGGGTTTCACACAAGCCCTACCTGTCCTTCTGTAGAACAGGC  977

seq1  TGGCCTGGAACTTATAGACCAACCTGCCTTTGTCTTGTGAGTGCTGGGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGAACTTATAGACCAACCTGCCTTTGTCTTGTGAGTGCTGGGAT  1027

seq1  TGAAGGCATGTACTAACAAGCCTGGCCTGGTTTGTCCCTCTTCCCCACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCATGTACTAACAAGCCTGGCCTGGTTTGTCCCTCTTCCCCACCT  1077

seq1  CCCCCATCTTTCTTTTTACAGACAATTAGTCTGTAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTTTCTTTTTACAGACAATTAGTCTGTAGAATTC  1118