BAC Information

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BAC

Clone NameB6Ng01-138B21
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,224 - 41,059,73729,975,722 - 29,976,849
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138B21.bB6Ng01-138B21.g
ACCDH937462DH937463
length1,0031,109
definitionDH937462|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B21, 5' end.DH937463|Mus musculus domesticus DNA, BAC clone: B6Ng01-138B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(29,975,722 - 29,976,849)
sequence
gaattctttgtttagctctgagccccattttttaatgggtttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgactgtgtcttttgccttacagaagctttgcagtttca
tggggtcccatttttcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgccaatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagctccttga
tccacttagatttaaccttagtacaaggagataggaatggatcaatttgc
attcttctacatgataaccatcagttgtgccagcaccatttgttgaaaat
gctgtcttttttttccactggatggttttagctcccttgtcaaagatcaa
gtgaccataggtgtgtgggttcatctctggatcttcagttctattccatt
ggtggaaagcatgttcttaaggacagccagtgttaatgtgaaatgatcct
aagtgtctacttacttctgaaagattatagcaggtagttatgttggctgt
tttgaaaatattctttcactgttcacaaatctgatctttttgattctggg
tcagaaaaagacttttgtataacccttctgaaagaagtctgtgtatctta
caagttctcaagtgaaaaagtactcaccatggtggacaatggccccagtc
gtgagatgcttcagagctggtgctttgatggtagacacaaaagctcatca
cattcatggttagagaaaagtagaagcctgattcatgagatgctgacata
gggttgatgtctataccacttgagttctcatggtccgtagagtgtttggg
agctgaaagactgtgccaacccttctgttaagatgagcactagttgcatt
atg
gaattcttggttgtgctgtgctgaccaagccgtgtttaaaatgcacgctc
tgcttctttatttaaacaatcgggacctctgcatgccacaacagtcagcc
tcaggcacagaatgagaggagctaaaggccgcctcctaccatacacagcc
ctcttgcaactctgccctagtaggaaactgcctaggccgcagggcatgcc
ggggcaatgtgctgcatgccgggcactgcagtcttctgctttccacggct
ccctggcggggctccttgcaatgcatactgggaattgtagtttaaggggc
tccttttcagagcggcaacgccctggagccgtgcatgctgggaagtgtac
tccataattcctctagtagaagccgccttggtccctgtgcaggacacgca
ggtctgagaccatttctttcttcaaaaaactggcctgctgccttgcctgc
tgggaaatgtagttcctcagtgccggagactagaagcccggatgtagtct
tgctgggcatttccttgtagtcttccctggcatcctctcccaaccccccg
aaaccccgaattttggctgaaaacctgggaacctgatcaatcctgtcaca
aaaagccaaaatcaaaccgaaacaaaaccacctgcctttccacaaagtta
gctagcactaggctaaaattccaaggtcatcctgaggaaatattaatcaa
aataagaaatttacaaacaataagaatataaaactatgaagttaattaag
atacagctggctgggcagtggtggcacatgcctttaatcccagcacttgg
gaggcagaggcaggaagatttatgagttcgaggccagcctggtctacaga
gtgagttccagaacagccaggggtatacagagaaacctgtctctcaaaca
gacaaacaaacaaacaacaaacaacatagatgacgagacctgtctctcta
ataaataataaataataataataaataataaataaataaatagcggacga
agacgacatagtcaacttcagagctccggtcatctgagaataatctaaac
tgaaatattcaattctgaacctcatccttgaaatttaattttgtacggtg
gggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-138B21.b_44_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGG--AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  98
      ||||  ||||||||||||||||||||||||||||||||||||||||| | 
seq2  GTGGAAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGATG  100

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  148
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  198
      |||| |||||||||||||||||||| | ||||||||||||||||||||||
seq2  AGGTTAAATCTAAGTGGATCAAGGAGCTCCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  248
      |||||||||||||||||||||||||||||||| |||||||| | ||||||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATTGGCACAGG  250

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  298
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  GGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  348
      | || |||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TTGAAAAATGGGACCCCATGAAACTGCAAAGCTTCTGTAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTAC  397
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  447
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA  450

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  497
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AGAAGGTGGACTCCAGAAAATCAAATAAACCCATTAAAAAATGGGGCTCA  500

seq1  GAGCTAAACAAAGAATT  514
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  517

seq1: chr12_29975722_29976849
seq2: B6Ng01-138B21.g_67_1175

seq1  GAATTCTTGGTTGTGCTGTGCTGACCAAGCCGTGTTTAAAATGCACGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTGTGCTGTGCTGACCAAGCCGTGTTTAAAATGCACGCTC  50

seq1  TGCTTCTTTATTTAAACAATCGGGACCTCTGCATGCCACAACAGTCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTATTTAAACAATCGGGACCTCTGCATGCCACAACAGTCAGCC  100

seq1  TCAGGCACAGAATGAGAGGAGCTAAAGGCCGCCTCCTACCATACACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACAGAATGAGAGGAGCTAAAGGCCGCCTCCTACCATACACAGCC  150

seq1  CTCTTGCAACTCTGCCCTAGTAGGAAACTGCCTAGGCCGCAGGGCATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAACTCTGCCCTAGTAGGAAACTGCCTAGGCCGCAGGGCATGCC  200

seq1  GGGGCAATGTGCTGCATGCCGGGCACTGCAGTCTTCTGCTTTCCACGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATGTGCTGCATGCCGGGCACTGCAGTCTTCTGCTTTCCACGGCT  250

seq1  CCCTGGCGGGGCTCCTTGCAATGCATACTGGGAATTGTAGTTTAAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCGGGGCTCCTTGCAATGCATACTGGGAATTGTAGTTTAAGGGGC  300

seq1  TCCTTTTCAGAGCGGCAACGCCCTGGAGCCGTGCATGCTGGGAAGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCAGAGCGGCAACGCCCTGGAGCCGTGCATGCTGGGAAGTGTAC  350

seq1  TCCATAATTCCTCTAGTAGAAGCCGCCTTGGTCCCTGTGCAGGACACGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATTCCTCTAGTAGAAGCCGCCTTGGTCCCTGTGCAGGACACGCA  400

seq1  GGTCTGAGACCATTTCTTTCTTCAAAAAACTGGCCTGCTGCCTTGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGACCATTTCTTTCTTCAAAAAACTGGCCTGCTGCCTTGCCTGC  450

seq1  TGGGAAATGTAGTTCCTCAGTGCCGGAGACTAGAAGCCCGGATGTAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGTAGTTCCTCAGTGCCGGAGACTAGAAGCCCGGATGTAGTCT  500

seq1  TGCTGGGCATTTCCTTGTAGTCTTCCCTGGCATCCTCTCCCAACCCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCATTTCCTTGTAGTCTTCCCTGGCATCCTCTCCCAACCCCCCG  550

seq1  AAACCCCGAATTTTGGCTGAAAACCTGGGAACCTGATCAATCCTGTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCGAATTTTGGCTGAAAACCTGGGAACCTGATCAATCCTGTCACA  600

seq1  AAAAGCCAAAATCAAACCGAAACAAAACCACCTGCCTTTCCACAAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAAATCAAACCGAAACAAAACCACCTGCCTTTCCACAAAGTTA  650

seq1  GCTAGCACTAGGCTAAAATTCCAAGGTCATCCTGAGGAAATATTAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCACTAGGCTAAAATTCCAAGGTCATCCTGAGGAAATATTAATCAA  700

seq1  AATAAGAAATTTACAAACAATAAGAATATAAAACTATGAAGTTAATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAATTTACAAACAATAAGAATATAAAACTATGAAGTTAATTAAG  750

seq1  ATACAGCTGGCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTGGCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGG  800

seq1  GAGGCAGAGGCAGGAAGATTTATGAGTTCGAGGCCAGCCTGGTCTACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGAAGATTTATGAGTTCGAGGCCAGCCTGGTCTACAGA  850

seq1  GTGAGTTCCAGAACAGCCAGGGGTATACAGAGAAACCCTGTCTCTCAAAA  900
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GTGAGTTCCAGAACAGCCAGGGGTATACAGAGAAA-CCTGTCTCTC-AAA  898

seq1  CAGACAAACAAACAAACAAACAAACAAACATAGATGAACGAAGACCCTGT  950
      ||||||||||||||||| ||||||| |||||||||| ||| ||| |||||
seq2  CAGACAAACAAACAAAC-AACAAAC-AACATAGATG-ACG-AGA-CCTGT  943

seq1  CTCTCTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  1000
      |||||| ||||||| ||||||| |||||   ||||||| |||||||||||
seq2  CTCTCT-AATAAAT-AATAAAT-AATAA--TAATAAAT-AATAAATAAAT  987

seq1  AAAATAGCGGAACGAAGACGACATAGTCAAAACTTCAAGGAGCTCCGGTC  1050
       ||||||||| |||||||||||||||||  |||||||  |||||||||||
seq2  -AAATAGCGG-ACGAAGACGACATAGTC--AACTTCA--GAGCTCCGGTC  1031

seq1  ATCTGAGAATTAATTCTAAACTTGAAATATACAA-TCTGAAAACTCATCC  1099
      ||||||||||  | ||||||| |||||||| ||| |||| || |||||||
seq2  ATCTGAGAAT--AATCTAAAC-TGAAATATTCAATTCTG-AACCTCATCC  1077

seq1  TTTGAAATTTAATTTTGTAC----GTGTGTGTG  1128
       |||||||||||||||||||    | |||||||
seq2  -TTGAAATTTAATTTTGTACGGTGGGGTGTGTG  1109