BAC Information

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BAC

Clone NameB6Ng01-138D17
Chromosome3 (Build37)
Map Location 148,534,754 - 148,535,885
singlet/doubletsinglet
Overlap geneLphn2
Upstream geneLOC100040354
Downstream geneLOC100040368, LOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138D17.bB6Ng01-138D17.g
ACCDH937550DH937551
length4801,124
definitionDH937550|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D17, 5' end.DH937551|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctgtaccccatttcttaatagggttatttgattttctgg
aattcatcttcttcagttctttgcatatattggatattggtcctctatcg
gatttagaataggtaaagatcctttcccaatctgttggtggcctttttat
cttattgagtgtcttttgccttacagaacctttgcaattttatgaggtcc
catttttttattctagatcttacagcacaagccattgttgttcttttcag
gaatttttcccctgtgcccatatctttgaggctttcccccacttcctcct
ttataagttttagtgtctctggttttatgtggagttccttgatctactta
gacttgagctttgtacaagctgagagatttttataaatggtgactttaga
cagaagaaggaggaggaggaggaggacgaggacgaggaggacgaggagga
ggaggaggacgaggaggtggaggaagggga

gaattcttgatatcctgcaaagtcttgggaacaatgaccattctaaaaac
cagacccagagctgtaactcagtcccctcttccagtgccatccctgcact
gtgtgtgtatctgttcctgcttatacctttaaaaccacgcaaacctgttt
ccccgttcagctctaatcttgagttgtgcaatgccaggccaattgctttc
cctctgcttttgattatcttatgctcagtattacactttaccaagtgcaa
agtatggagatgagattccacgtgtaatctattgtgagaggtgttttcat
caatagccttgttctgctgattaagcagggccttctgttttggcaagata
acattagcttctccagtcatgctccaaaaaccattgggaatcttccccag
atcattagatatgctacaagaaggctttggtgcgttttcttttcttcctt
aaattacttcttcactgtcccaccgttccccatcactgatggcaccacat
tattactgcagctcccctggaacttgcactccagctatgtctccaggcca
taggatgccattttcaattgaagcttctacttgaaaatataaattaagaa
aatttcattatctcctgccaggggccattattcaccacagttctaaggaa
gattaaaaatgcaaaatctaccaacttgaacaaatactccagcattcaac
agagaagcttggtattatccagacagaaactaaattcgagtttgcttaaa
tctgaaatgatcctgcagaattagtccaattctttcctgagtatgcctgc
tcagtgaagaatgtttccaccatttccttctctaattggcatctgctatt
tttaaacttcaattacaacaaactagcaataataggcttgttgtttccac
actcctcccttgccagcaaccttcaatcgtccaacgttcaagtctggaag
aaatacagactttcgaggttgtaggatactaagaagtgtaacttgttcac
agggctaactattaaaagaacagtcgtgatggcagtccaacacacatgca
tggggaatgtcattctaaatgaaaagaaactggtgatctaacatggagta
ggaataacattacttttggcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148534754_148535885
seq2: B6Ng01-138D17.g_67_1190

seq1  GAATTCTTGATATCCTGCAAAGTCTTGGGAACAATGACCATTCTAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATATCCTGCAAAGTCTTGGGAACAATGACCATTCTAAAAAC  50

seq1  CAGACCCAGAGCTGTAACTCAGTCCCCTCTTCCAGTGCCATCCCTGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGAGCTGTAACTCAGTCCCCTCTTCCAGTGCCATCCCTGCACT  100

seq1  GTGTGTGTATCTGTTCCTGCTTATACCTTTAAAACCACGCAAACCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATCTGTTCCTGCTTATACCTTTAAAACCACGCAAACCTGTTT  150

seq1  CCCCGTTCAGCTCTAATCTTGAGTTGTGCAATGCCAGGCCAATTGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTCAGCTCTAATCTTGAGTTGTGCAATGCCAGGCCAATTGCTTTC  200

seq1  CCTCTGCTTTTGATTATCTTATGCTCAGTATTACACTTTACCAAGTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTTGATTATCTTATGCTCAGTATTACACTTTACCAAGTGCAA  250

seq1  AGTATGGAGATGAGATTCCACGTGTAATCTATTGTGAGAGGTGTTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAGATGAGATTCCACGTGTAATCTATTGTGAGAGGTGTTTTCAT  300

seq1  CAATAGCCTTGTTCTGCTGATTAAGCAGGGCCTTCTGTTTTGGCAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCTTGTTCTGCTGATTAAGCAGGGCCTTCTGTTTTGGCAAGATA  350

seq1  ACATTAGCTTCTCCAGTCATGCTCCAAAAACCATTGGGAATCTTCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTTCTCCAGTCATGCTCCAAAAACCATTGGGAATCTTCCCCAG  400

seq1  ATCATTAGATATGCTACAAGAAGGCTTTGGTGCGTTTTCTTTTCTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGATATGCTACAAGAAGGCTTTGGTGCGTTTTCTTTTCTTCCTT  450

seq1  AAATTACTTCTTCACTGTCCCACCGTTCCCCATCACTGATGGCACCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTCTTCACTGTCCCACCGTTCCCCATCACTGATGGCACCACAT  500

seq1  TATTACTGCAGCTCCCCTGGAACTTGCACTCCAGCTATGTCTCCAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGCAGCTCCCCTGGAACTTGCACTCCAGCTATGTCTCCAGGCCA  550

seq1  TAGGATGCCATTTTCAATTGAAGCTTCTACTTGAAAATATAAATTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGCCATTTTCAATTGAAGCTTCTACTTGAAAATATAAATTAAGAA  600

seq1  AATTTCATTATCTCCTGCCAGGGGCCATTATTCACCACAGTTCTAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTATCTCCTGCCAGGGGCCATTATTCACCACAGTTCTAAGGAA  650

seq1  GATTAAAAATGCAAAATCTACCAACTTGAACAAATACTCCAGCATTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAATGCAAAATCTACCAACTTGAACAAATACTCCAGCATTCAAC  700

seq1  AGAGAAGCTTGGTATTATCCAGACAGAAACTAAATTCGAGTTTGCTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTTGGTATTATCCAGACAGAAACTAAATTCGAGTTTGCTTAAA  750

seq1  TCTGAAATGATCCTGCAGAATTAGTCCAATTCTTTCCTGAGTATGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGATCCTGCAGAATTAGTCCAATTCTTTCCTGAGTATGCCTGC  800

seq1  TCAGTGAAGAATGTTTCCACCATTTCCTTCTCTAATTGGCATCTGCTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAGAATGTTTCCACCATTTCCTTCTCTAATTGGCATCTGCTATT  850

seq1  TTTAAACTTCAATTACAACAAACTAGCAATAATAGGCTTGTTGTTTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTCAATTACAACAAACTAGCAATAATAGGCTTGTTGTTTCCAC  900

seq1  ACTCCTCCCTTGCCAGCAACCTTCAATCGTCCAACGTTCAAGTCTGGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCCTTGCCAGCAACCTTCAATCGTCCAACGTTCAAGTCTGGAAG  950

seq1  AAATACAGACTTTCGAGGTGTTAGGATACTAAGAAGTGTTACCTTGTTCA  1000
      |||||||||||||||||||  ||||||||||||||||| || ||||||||
seq2  AAATACAGACTTTCGAGGTTGTAGGATACTAAGAAGTG-TAACTTGTTCA  999

seq1  CAGGGCTAACTATAAACAGAACAGTCGTGATGGCAGTCCAACACACATGC  1050
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  CAGGGCTAACTATTAAAAGAACAGTCGTGATGGCAGTCCAACACACATGC  1049

seq1  ATGGTGAATTGTACATTCTAAATGAACAGAACACTGTGAATCTAACATAT  1100
      |||| ||| ||| ||||||||||||| |||| ||||   |||||||  ||
seq2  ATGGGGAA-TGT-CATTCTAAATGAAAAGAA-ACTGGTGATCTAAC--AT  1094

seq1  GGAGTAGGAATAACATTAACTTCTGGGCTTCC  1132
      ||||||||||||||||| |||| | |||||||
seq2  GGAGTAGGAATAACATT-ACTT-TTGGCTTCC  1124


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