BAC Information

Click to search

BAC

Clone NameB6Ng01-138F20
Chromosome3 (Build37)18 (Build37)
Map Location 97,704,143 - 97,704,17777,902,772 - 77,903,854
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip
Downstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F20.bB6Ng01-138F20.g
ACCDH937644DH937645
length5011,074
definitionDH937644|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F20, 5' end.DH937645|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,704,143 - 97,704,177)(77,902,772 - 77,903,854)
sequence
cacaacagccaaagacacatagtgataccctgtctcaaaaagagagaatg
aaaaaaggaagagagaaattaaagactttctaaaaccagatgaaaatgaa
tatgcaccatacacaaatttataggacacgtttatgggacatggaggtcc
tgaggggcaagtaaagtcataggattgtgtgcttgcattaaaaaaactca
ttagagagatcccactactagcttaacagcacaccagaaagctctagaac
aaaaagaggaaatcacacccaaaaagagtagatggcaagaaatgatcaga
cttgaggctgaaatcaataaaatagtaacaaacaaacaagcacatataaa
aacacaatataaagaatcaacgaaacaaagagttgtttccttatgaagat
cattaagattgacaaatccttatccaaattaactaaaaggcagaaagaat
atctagatttacagaattagaaaaggaaggaaggaaggaaggaagggagg
g
gaattcaaagccagcttcagctatagagggagcttgaagctagcctgggc
tatgtgaaaccatttccaaaaacaaacaaaacagtatttaaaacacaaag
cagtgatttgataaacacaagtttagcttgtgttttattttgtaggttgg
aacataaaaacgtatttttacaacaataggtagaaaggaatgattctctc
ttatgttcatgcaaaagaaaagtctgaataaaaaattttagcaaaaacaa
cgcagtaaaaataggtagttggtaacttgagattctcttaccatccattc
cacaaacctcattccgattcaaatcctgtttgatttgattttttcagatt
caaattttctatgaagattatgaaagaatgtactatacaagcatttggat
tcctagttatttaatgaatttgtcagcagtcttcattaaattataatata
ttgtacatgagaagcatgtattactttcttgagtaaatatttacttttaa
ccaactatgcaacatactgtgtggaacatcagggcatggtgctgcaggcc
tgtaatccctgaatttaagaggttgaggatggaggatcaagagtttgagg
tcagtctgggttataggaaatccttccttaaggggagggggcagtatgct
gaaggccactttactgcaggttgattttcttcaagaggaaaatagtgcag
tagctccccttactgggagagggtgtgttctaacatttccagtggatact
gtaagctttatacagcaccgaaccctgtatatactgtccccctacccccg
tatgtgcatctctactataaagcttagtttatacattagttatattaaag
gttaataacaataataagctagaaaatgtataaaaatacactgacagttc
tgtgagttatgtctcagattatcccattggactatatcacccttattgtg
ctgtagtagatggcagatacagtgtctaccaccaaggtgactaacactgg
cctaacgttgggctgtatgcaaaggtgcttggacaagcactgggatataa
gaaagtcctctaactgacatggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97704143_97704177
seq2: B6Ng01-138F20.b_519_553 (reverse)

seq1  CCCTCCCTCCCTTCCTTCCTTCCTTCCTTTTCTAA  35
      |||||||| ||||||||||||||||||||||||||
seq2  CCCTCCCTTCCTTCCTTCCTTCCTTCCTTTTCTAA  35

seq1: chr18_77902772_77903854
seq2: B6Ng01-138F20.g_65_1138 (reverse)

seq1  CGCCATGTCAGTTAGGAGACTGTTCTAATATCCCAGTGCCTTTGTCCAAG  50
      |||||||||||||||  |||| |||| ||||||||||||  |||||||||
seq2  CGCCATGTCAGTTAGAGGACT-TTCTTATATCCCAGTGC--TTGTCCAAG  47

seq1  ACACCTTTGCATACAGCCCAACGTTAGGCCAGTGTTAGTCACCTTGGTGT  100
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -CACCTTTGCATACAGCCCAACGTTAGGCCAGTGTTAGTCACCTTGGTG-  95

seq1  GTAGGCACTGTATCTGCCATCTTACTACAAGCACAATAAGGGTGAATATA  150
      |||| |||||||||||||||| |||||| ||||||||||||||| |||||
seq2  GTAGACACTGTATCTGCCATC-TACTAC-AGCACAATAAGGGTG-ATATA  142

seq1  GTCCAATGGGATAATCTGAGACAATAACTCACAGAACTTGTCAGTGTATT  200
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  GTCCAATGGGATAATCTGAGAC-ATAACTCACAGAAC-TGTCAGTGTATT  190

seq1  TTTATACATTTTCTAGCTTATTATTGTTATTAACC-TTAATATAACTAAT  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATACATTTTCTAGCTTATTATTGTTATTAACCTTTAATATAACTAAT  240

seq1  GTATAAACTAAGCTTTATAGTAGAGATGCACATACGGGGGTAGGGGGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACTAAGCTTTATAGTAGAGATGCACATACGGGGGTAGGGGGACA  290

seq1  GTATATACAGGGTTCGGTGCTGTATAAAGCTTACAGTATCCACTGGAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACAGGGTTCGGTGCTGTATAAAGCTTACAGTATCCACTGGAAAT  340

seq1  GTTAGAACACACCCTCTCCCAGTAAGGGGAGCTACTGCACTATTTTCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACACACCCTCTCCCAGTAAGGGGAGCTACTGCACTATTTTCCTC  390

seq1  TTGAAGAAAATCAACCTGCAGTAAAGTGGCCTTCAGCATACTGCCCCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAATCAACCTGCAGTAAAGTGGCCTTCAGCATACTGCCCCCTC  440

seq1  CCCTTAAGGAAGGATTTCCTATAACCCAGACTGACCTCAAACTCTTGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGGAAGGATTTCCTATAACCCAGACTGACCTCAAACTCTTGATC  490

seq1  CTCCATCCTCAACCTCTTAAATTCAGGGATTACAGGCCTGCAGCACCATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTCAACCTCTTAAATTCAGGGATTACAGGCCTGCAGCACCATG  540

seq1  CCCTGATGTTCCACACAGTATGTTGCATAGTTGGTTAAAAGTAAATATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGTTCCACACAGTATGTTGCATAGTTGGTTAAAAGTAAATATTT  590

seq1  ACTCAAGAAAGTAATACATGCTTCTCATGTACAATATATTATAATTTAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAAGTAATACATGCTTCTCATGTACAATATATTATAATTTAAT  640

seq1  GAAGACTGCTGACAAATTCATTAAATAACTAGGAATCCAAATGCTTGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGCTGACAAATTCATTAAATAACTAGGAATCCAAATGCTTGTAT  690

seq1  AGTACATTCTTTCATAATCTTCATAGAAAATTTGAATCTGAAAAAATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTCTTTCATAATCTTCATAGAAAATTTGAATCTGAAAAAATCAA  740

seq1  ATCAAACAGGATTTGAATCGGAATGAGGTTTGTGGAATGGATGGTAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGGATTTGAATCGGAATGAGGTTTGTGGAATGGATGGTAAGAG  790

seq1  AATCTCAAGTTACCAACTACCTATTTTTACTGCGTTGTTTTTGCTAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGTTACCAACTACCTATTTTTACTGCGTTGTTTTTGCTAAAAT  840

seq1  TTTTTATTCAGACTTTTCTTTTGCATGAACATAAGAGAGAATCATTCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAGACTTTTCTTTTGCATGAACATAAGAGAGAATCATTCCTT  890

seq1  TCTACCTATTGTTGTAAAAATACGTTTTTATGTTCCAACCTACAAAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTATTGTTGTAAAAATACGTTTTTATGTTCCAACCTACAAAATAA  940

seq1  AACACAAGCTAAACTTGTGTTTATCAAATCACTGCTTTGTGTTTTAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGCTAAACTTGTGTTTATCAAATCACTGCTTTGTGTTTTAAATA  990

seq1  CTGTTTTGTTTGTTTTTGGAAATGGTTTCACATAGCCCAGGCTAGCTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTTGTTTTTGGAAATGGTTTCACATAGCCCAGGCTAGCTTCA  1040

seq1  AGCTCCCTCTATAGCTGAAGCTGGCTTTGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTCTATAGCTGAAGCTGGCTTTGAATTC  1074