BAC Information

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BAC

Clone NameB6Ng01-138O16
Chromosome3 (Build37)
Map Location 143,863,911 - 143,997,528
singlet/doubletdoublet
Overlap geneLmo4
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
Downstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138O16.bB6Ng01-138O16.g
ACCDH938039DH938040
length1,0981,057
definitionDH938039|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O16, 5' end.DH938040|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,863,911 - 143,865,013)(143,996,455 - 143,997,528)
sequence
gaattctttccattagctgccctgaagcctgttgggaaagactgcttaca
acgacatatgactgttcctatacattactttaaaatgctagattagcata
atcctatcctctcttttggggatcaaggcagtgctacaaatggcaacaac
aacccaaacctcaaaggggaaagaaagcacacacacacacaaattctcca
ccaagagcctcacaccaacagtgagcacgccaaacctttccagcaagcct
aggaagaaaaacactaccactaggtctcaattttattttattaatgttat
cattattattatttactataaaaagaattacaagtctttaaactgacggg
tagtcagtgtttctcacaaggagcactaagaatgagtcacggcgctctgc
tcaaaaaaagttaaaaagtgcttacgtaaatatcataattagccatcact
agagaggaataatttctcacttaactgcacttttatttttaagtaaacct
tttgtctctgagcagctatgtgagtcccctcctagctcagggaaaacacc
tgagcattttagatacccttacttttaacctgaaccccaagctgaggcta
cacttagaatttaattcaaggggcgctccaccttgtacacctaatcacca
gaccagagtttttaaccacagtttggcatcaaatactgtaaaattaacac
atgctttcttgagttccttaaatgctgccaactagagagttttcgctttt
taagtgaagtctgtcatgtattcccacagatgtctggtccttccttaaac
ccctggtaaaccctggccttgttcctgctgggctcgcccatctggctgaa
aggcagcccgacttacctaatgtagtcatttctgcaaaggatcatgccgc
tcttggtgtaacaggacgtgccaatgtcgcccagctgcgcctggcagcag
agcacttgaggcagcggctatgccagtagctgtccatggcatagagcaaa
agcggtccgcgatcttgccccgcagcctgcgcagcgcttcaggagaggga
gccggccgtcaccggggcggctgcgagctgctgcccggattcatcatg
gaattcttttcacctgcctcctaggaagccactctgggctgcaagattta
ctctctgccttctaaagaaagagttggggctggaatggaaaaaaaaaagt
caagaagatggtggggaaaagacaggaaacagccacattcaaagtccgtg
ccgttggtggaaagggtgagctcagagcagccatgctgcagtagtagttc
aggaagtgaggcctttggaaagttctagaatttcatgctggtgtttgaat
tgtagccttgcccaataacttgaggaagaatacacatgattagcgtgatg
tgcaaacaacgttgtatgactccaaattgtgatggatgaagagagagtaa
ccgtgtattcagcagacagaccgatggtgagttgatgacatcatctgtat
ttgtagatgagttaccatttttggttaaaaagttaacagaagacctcagg
aagtagtgcaaatgacaatacaaccctccctccctcccattcatgcagcg
cagaggataagggccacctggagtgaagcagtgctgataggtacagagga
agaattggaagagagacccagagggttggttgggtttgcgtctaatcttg
ccctgaccgtcgcacacacacgagacaattgattatggatttcccttgat
ttgatttcattacatcatgtggaagatcttaagcagtgtgacaattattg
ggtggcattaacccaatggatgggaggaccaaacctcttctggtctcatg
aattaagggtgaaccctcaggggctgtgatgtctaagctgggccaaggag
ctatccagaaaaagtggaactagaggaaggcagagctcatggtggcaaca
ggggtggcacaggagactttagagtgttcgatggaaggattgtcttgtgt
tgattctgaaacaagactcacgtgtacctctggggatttccaggactcag
tcacgcctccagtgagtgtgtatagctttcatctggagaacagtgaggtc
agtaaatgcccttgtctggatctcatgaacaatatacatgagaatgtcac
tgctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143863911_143865013
seq2: B6Ng01-138O16.b_48_1145

seq1  GAATTCTTTCCATTAGCTGCCCTGAAGCCTGTTGGGAAAGACTGCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATTAGCTGCCCTGAAGCCTGTTGGGAAAGACTGCTTACA  50

seq1  ACGACATATGACTGTTCCTATACATTACTTTAAAATGCTAGATTAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATATGACTGTTCCTATACATTACTTTAAAATGCTAGATTAGCATA  100

seq1  ATCCTATCCTCTCTTTTGGGGATCAAGGCAGTGCTACAAATGGCAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCCTCTCTTTTGGGGATCAAGGCAGTGCTACAAATGGCAACAAC  150

seq1  AACCCAAACCTCAAAGGGGAAAGAAAGCACACACACACACAAATTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACCTCAAAGGGGAAAGAAAGCACACACACACACAAATTCTCCA  200

seq1  CCAAGAGCCTCACACCAACAGTGAGCACGCCAAACCTTTCCAGCAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCCTCACACCAACAGTGAGCACGCCAAACCTTTCCAGCAAGCCT  250

seq1  AGGAAGAAAAACACTACCACTAGGTCTCAATTTTATTTTATTAATGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAACACTACCACTAGGTCTCAATTTTATTTTATTAATGTTAT  300

seq1  CATTATTATTATTTACTATAAAAAGAATTACAAGTCTTTAAACTGACGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATTATTTACTATAAAAAGAATTACAAGTCTTTAAACTGACGGG  350

seq1  TAGTCAGTGTTTCTCACAAGGAGCACTAAGAATGAGTCACGGCGCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTGTTTCTCACAAGGAGCACTAAGAATGAGTCACGGCGCTCTGC  400

seq1  TCAAAAAAAGTTAAAAAGTGCTTACGTAAATATCATAATTAGCCATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAGTTAAAAAGTGCTTACGTAAATATCATAATTAGCCATCACT  450

seq1  AGAGAGGAATAATTTCTCACTTAACTGCACTTTTATTTTTAAGTAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAATAATTTCTCACTTAACTGCACTTTTATTTTTAAGTAAACCT  500

seq1  TTTGTCTCTGAGCAGCTATGTGAGTCCCCTCCTAGCTCAGGGAAAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTGAGCAGCTATGTGAGTCCCCTCCTAGCTCAGGGAAAACACC  550

seq1  TGAGCATTTTAGATACCCTTACTTTTAACCTGAACCCCAAGCTGAGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTTAGATACCCTTACTTTTAACCTGAACCCCAAGCTGAGGCTA  600

seq1  CACTTAGAATTTAATTCAAGGGGCGCTCCACCTTGTACACCTAATCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAATTTAATTCAAGGGGCGCTCCACCTTGTACACCTAATCACCA  650

seq1  GACCAGAGTTTTTAACCACAGTTTGGCATCAAATACTGTAAAATTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGTTTTTAACCACAGTTTGGCATCAAATACTGTAAAATTAACAC  700

seq1  ATGCTTTCTTGAGTTCCTTAAATGCTGCCAACTAGAGAGTTTTCGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTTGAGTTCCTTAAATGCTGCCAACTAGAGAGTTTTCGCTTTT  750

seq1  TAAGTGAAGTCTGTCATGTATTCCCACAGATGTCTGGTCCTTCCTTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGTCTGTCATGTATTCCCACAGATGTCTGGTCCTTCCTTAAAC  800

seq1  CCCTGGTAAACCCTGGCCTTGTTCCTGCTGGGCTCGCCCATCTGGCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAAACCCTGGCCTTGTTCCTGCTGGGCTCGCCCATCTGGCTGAA  850

seq1  AGGCAGCCCGACTTACCTAATGTAGTCATTTCTGCAAAGGATCATGCCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCGACTTACCTAATGTAGTCATTTCTGCAAAGGATCATGCCGC  900

seq1  TCTTGGTGTAACAGGACGTGCCAATGTCGCCCAGCTGCGCCTGGCAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTGGTGTAACAGGACGTGCCAATGTCGCCCAGCTGCGCCTGGCAGCA-  949

seq1  GAGCACTTGAGGCAGCGGCTATGCCAGTAGCTGTCCATGGCATAGAGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGCACTTGAGGCAGCGGCTATGCCAGTAGCTGTCCATGGCATAGAGCA-  998

seq1  AAAGCGGTCCGCGATCTTGCCCCCGCAGCCTGCGCAGCGCTTCCAGGAGA  1050
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  AAAGCGGTCCGCGATCTTG-CCCCGCAGCCTGCGCAGCGCTT-CAGGAGA  1046

seq1  GGGAGCCGGCCGTCACCGGGGGCGGCTGCGAGCTGCTGCCCGGATTCACC  1100
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GGGAGCCGGCCGTCACC-GGGGCGGCTGCGAGCTGCTGCCCGGATTCATC  1095

seq1  ATG  1103
      |||
seq2  ATG  1098

seq1: chr3_143996455_143997528
seq2: B6Ng01-138O16.g_71_1127 (reverse)

seq1  CTGAGGCCAGTGACATCCTCATGTATATTTGTCTCATGAGAACACAGACC  50
      |||||  ||||||||| |||||||||| |||| |||||||| | ||||| 
seq2  CTGAG--CAGTGACATTCTCATGTATA-TTGT-TCATGAGATC-CAGAC-  44

seq1  AAAGGGCATTTTACTGACCCTTCCACTGTCTCT-CAGAAGAAAGCTATAC  99
       ||||||| ||||||||||    |||||| ||| |||| |||||||||||
seq2  -AAGGGCA-TTTACTGACC---TCACTGT-TCTCCAGATGAAAGCTATAC  88

seq1  ACACTCCACTGGAGGCGTGACCTGAGTCCTGGAAATCCCCAGAGTACCAC  149
      ||||| |||||||||||||| |||||||||||||||||||||||   |||
seq2  ACACT-CACTGGAGGCGTGA-CTGAGTCCTGGAAATCCCCAGAGGTACAC  136

seq1  GTGGCTCTTGTTTCCAGGATTCACACAAGACATCCCTTCCATCGAACACT  199
      |||  |||||||| ||| ||  ||||||||||  ||||||||||||||||
seq2  GTGAGTCTTGTTT-CAGAATCAACACAAGACAATCCTTCCATCGAACACT  185

seq1  CCTAAAGTCTCCCTGTGCCACCCCTGTTGCCACCATGAGCTCTGCCTTCC  249
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -CTAAAGTCT-CCTGTGCCACCCCTGTTGCCACCATGAGCTCTGCCTTCC  233

seq1  TCTAGTTCCACTTTTTCTGGATAGCTCCTTGGCCCAGCTTAGACATCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCCACTTTTTCTGGATAGCTCCTTGGCCCAGCTTAGACATCACA  283

seq1  GCCCCCTGAGGGTTCACCCTTAATTCATGAGACCAGAAGAGGTTTGGTCC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CCCCTGAGGGTTCACCCTTAATTCATGAGACCAGAAGAGGTTTGGTCC  332

seq1  TCCCATCCATTGGGTTAATGCCACCCAATAATTGTCACACTGCTTAAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCATTGGGTTAATGCCACCCAATAATTGTCACACTGCTTAAGAT  382

seq1  CTTCCACCTGATGTAATGAAATCAAATCAAGGGAAATCCATAATCAATTG  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACATGATGTAATGAAATCAAATCAAGGGAAATCCATAATCAATTG  432

seq1  TCTCGTGTGTGTGCGACGGTCAGGGCAAGATTAGACGCAAACCCAACCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGTGTGTGCGACGGTCAGGGCAAGATTAGACGCAAACCCAACCAA  482

seq1  CCCTCTGGGTCTCTCTTCCAATTCTTCCTCTGTACCTATCAGCACTGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGGTCTCTCTTCCAATTCTTCCTCTGTACCTATCAGCACTGCTT  532

seq1  CACTCCAGGTGGCCCTTATCCTCTGCGCTGCATGAATGGGAGGGAGGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGGTGGCCCTTATCCTCTGCGCTGCATGAATGGGAGGGAGGGAG  582

seq1  GGTTGTATTGTCATTTGCACTACTTCCTGAGGTCTTCTGTTAACTTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATTGTCATTTGCACTACTTCCTGAGGTCTTCTGTTAACTTTTTA  632

seq1  ACCAAAAATGGTAACTCATCTACAAATACAGATGATGTCATCAACTCACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATGGTAACTCATCTACAAATACAGATGATGTCATCAACTCACC  682

seq1  ATCGGTCTGTCTGCTGAATACACGGTTACTCTCTCTTCATCCATCACAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTCTGTCTGCTGAATACACGGTTACTCTCTCTTCATCCATCACAAT  732

seq1  TTGGAGTCATACAACGTTGTTTGCACATCACGCTAATCATGTGTATTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCATACAACGTTGTTTGCACATCACGCTAATCATGTGTATTCTT  782

seq1  CCTCAAGTTATTGGGCAAGGCTACAATTCAAACACCAGCATGAAATTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTTATTGGGCAAGGCTACAATTCAAACACCAGCATGAAATTCTA  832

seq1  GAACTTTCCAAAGGCCTCACTTCCTGAACTACTACTGCAGCATGGCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCCAAAGGCCTCACTTCCTGAACTACTACTGCAGCATGGCTGCT  882

seq1  CTGAGCTCACCCTTTCCACCAACGGCACGGACTTTGAATGTGGCTGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCACCCTTTCCACCAACGGCACGGACTTTGAATGTGGCTGTTTC  932

seq1  CTGTCTTTTCCCCACCATCTTCTTGACTTTTTTTTTTCCATTCCAGCCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTCCCCACCATCTTCTTGACTTTTTTTTTTCCATTCCAGCCCC  982

seq1  AACTCTTTCTTTAGAAGGCAGAGAGTAAATCTTGCAGCCCAGAGTGGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCTTTAGAAGGCAGAGAGTAAATCTTGCAGCCCAGAGTGGCTT  1032

seq1  CCTAGGAGGCAGGTGAAAAGAATTC  1074
      |||||||||||||||||||||||||
seq2  CCTAGGAGGCAGGTGAAAAGAATTC  1057