BAC Information

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BAC

Clone NameB6Ng01-139K07
Chromosome3 (Build37)
Map Location 27,192,575 - 27,322,982
singlet/doubletdoublet
Overlap geneTnfsf10, Ghsr, Fndc3b
Upstream geneNlgn1, LOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K07.bB6Ng01-139K07.g
ACCDH938576DH938577
length1,077371
definitionDH938576|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K07, 5' end.DH938577|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,321,887 - 27,322,982)(27,192,575 - 27,192,951)
sequence
gaattcacagtggcaaagccaaagcaaatgggaagcaattgttaccatgt
ggcagccgccgcagagcctgggccctgggtgtcgctgcttacacctccat
gccaggctgaagggtagggtcatttacacatgcacggtggatttgcatcg
ggatgggaagaacagtggtgtgtacaccagagggccaggcccagttcctt
tcctcagcacctcttgggtgcgttttacttctagctttcttttggttcag
gtttccttgttctcatggtgaaacgaacagtctgttttaataattacacc
agcatttactagctaagaactaaatccttactaactcttcgctctagatt
caaatgcatatatatgtgtatgtgtgtgtgtgtctttttcgccccttcat
gaacattccaagctcaaactattttttcaagagttttcaatttttttaaa
ccattgttgaaagggtgaaaactactctatatacatgcaaatcaattttg
gttttgcacagcacaaaaaaataaggaagcagaattacacagatctctgt
tcagacatcaatattttttaccacaaaatattgaatataaatattggaga
caagaacagaattgacaaatgacaagaaaacatttttattaacaattatt
gctcaggtttattgcagttagaaacccaaatggagacaatctttaattgg
catgtctacaaatatgtttctctagtgtcatcttcagaatgcagcagcag
ggtgaatattgatccttcatgttatcacacagggcactacggggaagggg
ctcctgttggctggactactttaaagtggtcttaaagcagactgtagagc
ctgtgtgtgtctcaacaacttggaacacgtaacagagaagctgttttaat
tagcacttaccatgcttcagtccaaacaaaacatatcaagatggaatttt
tcatgctgtcatttattactaattttaaagtcatgtcccttttatggctc
atgataaaaaatctacataagtgactgcttaaagttccgtgaactgaatt
tgtctcgattcctggagtgcaaacata
cagcaaccctggctcagcctttgctgtcctgccccaaaccctggtcagtc
agcctgtgcaagctacaagccccggccccacccccgatcctcccagggag
gagctccccttcaaatccttttcctccactgagcatgttttggcagtcta
ggaagcacgagggatgctcttccctacaggccctgctcctcactagactg
ctcagctacagagccaatcccggggtagacagtacagtgtttgccttcag
tcaccagcatttagctgcaaaggaggaaggtcaatgatgctttgtgaagg
tcaaagccgtttgtgaatggctccagtggaagcaaagtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27321887_27322982
seq2: B6Ng01-139K07.b_44_1120 (reverse)

seq1  TATGTCTGCACTCCAGGAAACCGAGGACAAATTCAGTTCACGGGAAACTT  50
      ||||| ||||||||||| || ||| ||||||||||||||||||  |||||
seq2  TATGTTTGCACTCCAGG-AATCGA-GACAAATTCAGTTCACGG--AACTT  46

seq1  TAAGCAGTCACTTATGTAAGATTTTTTTATTCATGAGACACTAAAAGGGA  100
      ||||||||||||||||| |||||||||   ||||||| || |||||||||
seq2  TAAGCAGTCACTTATGT-AGATTTTTT--ATCATGAGCCA-TAAAAGGGA  92

seq1  ACAATGAACTTAAAAATTAGTAAAATAAATGACAGCATTGAAAGATTTCA  150
         ||| |||| |||||||||  |||||||||||||| ||||| | ||| 
seq2  --CATG-ACTTTAAAATTAGT--AATAAATGACAGCA-TGAAA-AATTCC  135

seq1  ATCTTGATCTGTTTTGTTTTGGACTTGAAGCATGGTAAGTGACTAATTAA  200
      |||||||| ||||||| ||||||| |||||||||||||||| ||||||||
seq2  ATCTTGATATGTTTTG-TTTGGAC-TGAAGCATGGTAAGTG-CTAATTAA  182

seq1  AACAGCTTCTCTGTTACGTGTTCCAAGTTGTTGAGACACACACAGGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCTCTGTTACGTGTTCCAAGTTGTTGAGACACACACAGGCTCT  232

seq1  ACAGTCTGCTTTAAGAACAACTTTAAAGTAGTCCAGCCAACAGGAGCCCC  300
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  ACAGTCTGCTTTAAG-ACCACTTTAAAGTAGTCCAGCCAACAGGAGCCCC  281

seq1  TTCCCCGTAGTGCCCTGTGTGATAACATGAAGGATCAATATTCACCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGTAGTGCCCTGTGTGATAACATGAAGGATCAATATTCACCCTGC  331

seq1  TGCTGCATTCTGAAGATGACACTAGAGAAACATATTTGTAGACATGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTCTGAAGATGACACTAGAGAAACATATTTGTAGACATGCCAA  381

seq1  TTAAAGATTGTCTCCATTTGGGTTTCTAACTGCAATAAACCTGAGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTGTCTCCATTTGGGTTTCTAACTGCAATAAACCTGAGCAATA  431

seq1  ATTGTTAATAAAAATGTTTTCTTGTCATTTGTCAATTCTGTTCTTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAATAAAAATGTTTTCTTGTCATTTGTCAATTCTGTTCTTGTCTC  481

seq1  CAATATTTATATTCAATATTTTGTGGTAAAAAATATTGATGTCTGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTATATTCAATATTTTGTGGTAAAAAATATTGATGTCTGAACAG  531

seq1  AGATCTGTGTAATTCTGCTTCCTTATTTTTTTGTGCTGTGCAAAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGTAATTCTGCTTCCTTATTTTTTTGTGCTGTGCAAAACCAAA  581

seq1  ATTGATTTGCATGTATATAGAGTAGTTTTCACCCTTTCAACAATGGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGCATGTATATAGAGTAGTTTTCACCCTTTCAACAATGGTTTA  631

seq1  AAAAAATTGAAAACTCTTGAAAAAATAGTTTGAGCTTGGAATGTTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGAAAACTCTTGAAAAAATAGTTTGAGCTTGGAATGTTCATGA  681

seq1  AGGGGCGAAAAAGACACACACACACATACACATATATATGCATTTGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGAAAAAGACACACACACACATACACATATATATGCATTTGAATC  731

seq1  TAGAGCGAAGAGTTAGTAAGGATTTAGTTCTTAGCTAGTAAATGCTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCGAAGAGTTAGTAAGGATTTAGTTCTTAGCTAGTAAATGCTGGTG  781

seq1  TAATTATTAAAACAGACTGTTCGTTTCACCATGAGAACAAGGAAACCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTAAAACAGACTGTTCGTTTCACCATGAGAACAAGGAAACCTGA  831

seq1  ACCAAAAGAAAGCTAGAAGTAAAACGCACCCAAGAGGTGCTGAGGAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGAAAGCTAGAAGTAAAACGCACCCAAGAGGTGCTGAGGAAAGG  881

seq1  AACTGGGCCTGGCCCTCTGGTGTACACACCACTGTTCTTCCCATCCCGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCCTGGCCCTCTGGTGTACACACCACTGTTCTTCCCATCCCGAT  931

seq1  GCAAATCCACCGTGCATGTGTAAATGACCCTACCCTTCAGCCTGGCATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCACCGTGCATGTGTAAATGACCCTACCCTTCAGCCTGGCATGG  981

seq1  AGGTGTAAGCAGCGACACCCAGGGCCCAGGCTCTGCGGCGGCTGCCACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAAGCAGCGACACCCAGGGCCCAGGCTCTGCGGCGGCTGCCACAT  1031

seq1  GGTAACAATTGCTTCCCATTTGCTTTGGCTTTGCCACTGTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAATTGCTTCCCATTTGCTTTGGCTTTGCCACTGTGAATTC  1077

seq1: chr3_27192575_27192951
seq2: B6Ng01-139K07.g_69_445

seq1  GAATTCCAGCAACCCTGGCTCAGCCTTTGCTGTCCTGCCCCAAACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAACCCTGGCTCAGCCTTTGCTGTCCTGCCCCAAACCCTGG  50

seq1  TCAGTCAGCCTGTGCAAGCTACAAGCCCCGGCCCCACCCCCGATCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGCCTGTGCAAGCTACAAGCCCCGGCCCCACCCCCGATCCTCCC  100

seq1  AGGGAGGAGCTCCCCTTCAAATCCTTTTCCTCCACTGAGCATGTTTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGCTCCCCTTCAAATCCTTTTCCTCCACTGAGCATGTTTTGGC  150

seq1  AGTCTAGGAAGCACGAGGGATGCTCTTCCCTACAGGCCCTGCTCCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGAAGCACGAGGGATGCTCTTCCCTACAGGCCCTGCTCCTCACT  200

seq1  AGACTGCTCAGCTACAGAGCCAATCCCGGGGTAGACAGTACAGTGTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTCAGCTACAGAGCCAATCCCGGGGTAGACAGTACAGTGTTTGC  250

seq1  CTTCAGTCACCAGCATTTAGCTGCAAAGGAGGAAGGTCAATGATGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCACCAGCATTTAGCTGCAAAGGAGGAAGGTCAATGATGCTTTG  300

seq1  TGAAGGTCAAAGCCGTTTGTGAATGGCTCCAGTGGAAGCAAAGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCAAAGCCGTTTGTGAATGGCTCCAGTGGAAGCAAAGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTG  377
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTG  377