BAC Information

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BAC

Clone NameB6Ng01-139P01
Chromosome3 (Build37)
Map Location 41,059,177 - 41,059,729
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P01.bB6Ng01-139P01.g
ACCDH938798DH938799
length1,220562
definitionDH938798|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P01, 5' end.DH938799|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagacacagaaaatgaggaaatccaaaacatcataaga
tcatactacaaaagcctatactgaacaaaactggaaaacctggatgaaat
ggacaattttctagacagatacaaggtaccaaagttaaatctggatcaga
ttaatgatctaaacagtcccatatcccctaaagaaatagacacagtcatt
aatagtctcccaaccaaagaaagcccaggaccagatgggtttagtgcaga
gttctatcataccttcaaagatgacctaattccaattatcctcaaactat
ttcacaaaataaaaacagaaggaactctacccaattcattctatgaagcc
acaattactctgacacctaaaccacacaaagacccaacaaagaaatagaa
cttcagaccaatttcccttaggactatcagttcaaaaatattcaataaaa
ttcttgcaatctgaatccaaagacacattaaaaggatcattcatcatgat
caagtaggcttcatcccagggatgcagggatggttccatatatggaaatc
catcaatgtaatccaccgtataaagaaactcaaaggaaaaaaaatatgtt
aatctctttagatgctgagagagcatttgaaaaatcgaacacctgttcat
gataaaagtcttggaaagatcaggaaatcaatgtccataactaaacatag
taaaaacaatatacagcaaaccagtagccaacatcaaactcaatggagag
gaatttgaagcaatcccactaaaatcagggactagacaaggctgcccact
ctctccctacatattcaatatagtacttgacgtcctagccagagcaatta
gataacaaaaagagatcaaagggatacaaattggaaaggagaagtcaaac
tatcactgtttgcagatgtatgatcatatactttagtgacctcaaaactt
ccaccagaagaactcctaacctgataaagaacttcagcaaagtatctgga
tataaaatatttaaacacatcagtggctttctctacacaaagataaacac
actgagaaaaaaaaattagagagaacacccttcagaatagtcacaagtaa
ataaaaatttcttgggtgcttatagcatgagatctgttgatagaacttta
ttctgagaaagatggaactcgaatgtagactcatgccatgaatgcaaata
actatgtcaagttcatcctg
tttgtttagctctgagtcccattttttaatggggttatttgattttctgg
agtccacattcttgagttctttatatatgttggatattagtaccctatct
gatttaggattggtaaagatcctttcccaaactgttggtgtttttttttt
ttttttttttttgacagtgtcttttgacttacagaagctttgcaatttta
tgaggtcctatttgtcgattcttaatcttacagcccaagccattgctgtt
ctattcaggaatttaacccctattcccatatcttcgaggcttttccttac
tttctcctctataagtttcagtgtctctggttttatgtgtaggtgtttga
tccacttagatttgatcttagtgcaaggagacaagaatggatctattcgc
attcttccacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccaatggatggtttttgcttccttgtcgaagatcaagt
gaccataggtgtgtgacttcatttctgggttttaattctattccattgat
ctacctgtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059177_41059729
seq2: B6Ng01-139P01.g_78_636 (reverse)

seq1  ACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCA  50
      ||||||| | ||| ||||||||||||||| || || |||||| |||  ||
seq2  ACAGACAGGTAGATCAATGGAATAGAATT-AAAACCCAGAAATGAAGTCA  49

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  100
      ||||||||||||||||||||||||||||||| ||| ||||||||||| ||
seq2  CACACCTATGGTCACTTGATCTTCGACAAGGAAGCAAAAACCATCCATTG  99

seq1  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAT  150
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTAT  149

seq1  CATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTC  200
      ||||| ||||||||||||| |||||| || | |||||||| |||||| ||
seq2  CATGTGGAAGAATGCGAATAGATCCATTCTTGTCTCCTTGCACTAAGATC  199

seq1  AAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACT  250
      |||||||||||||||||  | |  ||||||||||||||||||||||||||
seq2  AAATCTAAGTGGATCAAACACCTACACATAAAACCAGAGACACTGAAACT  249

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAA  300
      |||||||||||||||  |||||||||| ||||||||||  | |||||  |
seq2  TATAGAGGAGAAAGTAAGGAAAAGCCTCGAAGATATGGGAATAGGGGTTA  299

seq1  AATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGAC  350
      |||||||| ||||||||||||||||||| ||||||||||| ||||| |||
seq2  AATTCCTGAATAGAACAGCAATGGCTTGGGCTGTAAGATTAAGAATCGAC  349

seq1  AAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGT  400
      |||| ||||||||| ||| ||||||||||||| ||| |||||||||| ||
seq2  AAATAGGACCTCATAAAATTGCAAAGCTTCTGTAAGTCAAAAGACACTGT  399

seq1  C-------AATAAGACAAAAAGGCACCAACAGATTGGGAAAGGATCTTTA  443
      |       || || | |||||  ||||||||| |||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAACACCAACAGTTTGGGAAAGGATCTTTA  449

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTC  493
      || |||||||||||||||||| |||||||||||| |||||| ||||||||
seq2  CCAATCCTAAATCAGATAGGGTACTAATATCCAACATATATAAAGAACTC  499

seq1  AAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTC  543
      ||||| ||||| |||||||||||||||||||||||||||||||||| |||
seq2  AAGAATGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGACTC  549

seq1  AGAGCTAAAC  553
      ||||||||||
seq2  AGAGCTAAAC  559