BAC Information

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BAC

Clone NameB6Ng01-140D09
Chromosome3 (Build37)
Map Location 41,059,187 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D09.bB6Ng01-140D09.g
ACCDH939001DH939002
length9881,184
definitionDH939001|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D09, 5' end.DH939002|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctaagccccattttttagtgggattatttggtt
ttctggagtccaccttcttgagttctttatgtatatttattagtccccta
tctgatttaggataggtaaagatcctttcccaatctgttggtggcctttt
tgtctttttgacagtgtcttttgccttgcagaagctttgcagtttcatga
ggtcccatttttcaattcttgatcttacagcacaagccattgttgttcta
ctcaggaatttttcccctgtgccaatatcttcgaggcttttccacacttt
ctcctctataagtttcagtgtctctggttttatatggagctccttgatca
acttagatttgacctcagtccaaggagataggaatggattagttgtgtcc
gcaccatttgttgaaaatgctgtttttttccccccactggatggttttag
ctctcttgttgaagatcaagtgactataggtgtgtgggttcatttctggg
tcttcaattctattccattggtctacttttcttcattataccagtaccat
gcctttttttttttttttatcacaattgctgtgtagtaaagctttaggtt
aggcatggtgattccactagaggttcttttatccttgagaagagttttgc
tatcctaggttttttgtcattccagatgtgtttgcagattgctctttcta
attcattgaagaattgagttggaattttgatggggattgcattgaatctg
cagattgctttcggaaagatagcaatttttacaatgttgattgtgccaat
ccatgagcatgggagatctttccctcttctgagatcttctttaatttctt
tcttcagggacatgaagttcttatcaaacagatctttcacttccttagtt
agtgtatgccttagttatattatttgtgactattgagaaggtgttttctt
cctaatttctttctcactgtttactcttgtgtagagaa
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatacaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctgaggaagatgtggagaaagaggaacactcctccattgtgggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggtttctcc
gaaaattggacatagtactacaggaggatcccgtaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctctactat
gttcatagcagccttattaataatagccagaagctgcaaagaacccatat
gtccctcaacagaagaatggatacaaaaaatgtggtacatttacacaatg
gagtactgctcagctattaaaaagaatgaatttatgaaattcctaagcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaagtgtactaacagataagtggatattaacccagaaac
ttagtatagcgagatataaggtacaatatgtaaaacatatgaaactgaag
aagaacgaagaccaaagtgtggacactttgctcattcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggtccatctagagactgccatatccagggttccatcccataatta
gtctccaagcgatgacaccattgcatacactagcaagactttgttgcaag
gacggtgatatagctgtccccttgtgagactaggcctagcaaacacagaa
gtggatgctcacagtcaactattggatggatcacagggcttccaatggag
gagctagaagaaactatccaggagctaaagaagatctgcaactctatcga
ggaacaacatatgaacctaccagtaccctcgagctcttgactctagctgc
ataggtatcaaaagatgaacttagtcggccatcactgtaaagaagagtcc
atggttcaggcaaaagtatatgcctcgattacagggaaatgccaggccta
aaaaatgggaaaggttggtataggtgacttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-140D09.b_46_568 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| ||| |||||||||||| 
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATA  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT---GGAAAAAA  97
      |||||||||||||| ||||| ||||||||||||||||||   || |||||
seq2  GTCACTTGATCTTCAACAAGAGAGCTAAAACCATCCAGTGGGGGGAAAAA  100

seq1  GACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAG  147
       ||||||||||||||||||||||| | ||||||                 
seq2  AACAGCATTTTCAACAAATGGTGCGGACACAAC-----------------  133

seq1  AAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTA  197
                  | ||||| ||||||||||||| ||| ||||||||||||
seq2  ------------TAATCCATTCCTATCTCCTTGGACTGAGGTCAAATCTA  171

seq1  AGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAG  247
      ||| ||||||||| | ||| ||||||||||||||||||||||||||||||
seq2  AGTTGATCAAGGAGCTCCATATAAAACCAGAGACACTGAAACTTATAGAG  221

seq1  GAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCT  297
      ||||||||| |||||||||| |||||||| | ||||||||||||||||||
seq2  GAGAAAGTGTGGAAAAGCCTCGAAGATATTGGCACAGGGGAAAAATTCCT  271

seq1  GCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGG  347
      |  ||||||| |||||||||||||||||||||  ||||| || |||||||
seq2  GAGTAGAACAACAATGGCTTGTGCTGTAAGATCAAGAATTGAAAAATGGG  321

seq1  ACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAG  397
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  ACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACTGTCAAAAAG  371

seq1  ACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  446
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  421

seq1  AGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATT  496
      ||||||||||||||||   |||||| || ||||||||||||||||||| |
seq2  AGATAGGGGACTAATA---AATATACATAAAGAACTCAAGAAGGTGGACT  468

seq1  CCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAA  546
      |||||||| ||||||| |||| |||||||||||||| |||||||||||||
seq2  CCAGAAAACCAAATAATCCCACTAAAAAATGGGGCTTAGAGCTAAACAAA  518

seq1  GAATT  551
      |||||
seq2  GAATT  523