BAC Information

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BAC

Clone NameB6Ng01-141A09
Chromosome3 (Build37)
Map Location 141,628,510 - 141,756,536
singlet/doubletdoublet
Overlap geneBmpr1b
Upstream genePdha2, Unc5c, LOC100039923
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A09.bB6Ng01-141A09.g
ACCDH939598DH939599
length1,188819
definitionDH939598|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A09, 5' end.DH939599|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,755,320 - 141,756,536)(141,628,510 - 141,629,330)
sequence
gaattcacaaaatgatgctggtcactttgataacgattagtgaggatccc
ggagacaccaggggaggcagatttttcattgaagtgaaaatgttttatct
ttgaaatcctagccatattaccctttcaccatcgatacacaattaagtaa
tttgctcacaatcatgccaaattagagaatattttatttatgaccttccc
ggatgtctcaggcttacacttagttatgactatgtgtgaactcctttaaa
ggaccactttgtcagtgtgccctcttgctttaagaaatacccatcatctt
tgtgccacctggtctgagatctggcttctgagccgccacagcacactgat
caaagcacacaataaatcaagaattcaggagttgaccatgtgaggattcc
agcactttttgtcttggactgttctgaagataagtaagcccggcaaggtc
ttctgagctgattgatgtcttacctagcaagcaatgtcagggagaaggct
gtgcttcaggacgtaaagtaaggctagcttgtttctgcagagccaaaggt
ttttatctcccagtctctatagctaggcatagtcttattatcctttaaga
cacatttcccacttacagtcttcttaaaaagaggtcttagaaattatttt
actccactaataaagattgaggtcacagtacagaaaatactgattcaaaa
atgtttaatttcctttttttgcgcatgcgcatgcgcacgtgtgtgcgtgc
gtgcatgcatgcatgagtgggtgcgtacgtgagcgtgtgcgtatgtatta
gggcatgtggaggcctaaggatgtttttcttggaccattcttccacatta
ttctttgagggtaggtctctgattcgaactcagatctcatcaactggata
gtttggttgccagcctgctccagactagatctcctatctctactttcaga
ggctagaagttacaggtacgcacgcacctccaatcatgggctctggggat
ctgcattctggtcttcttcctgtgcactgaacacttaattacgagacata
tctttgggctgaaatacatagttataacatgatcaatctggtcagccgga
cacaggtatcttgatccttagacattcctcgacagtatactatctcacca
gtttgcgtcgtcttaagagtgcattgatacctggctcc
gaattcccgagggaaaacaaaatcgctttctcaaacttattgttccctaa
tagctttgactctaaatgtgttgggtggaatttatcacttgtatgatagc
ctagcttctgaacttggagatgggttaatatttaatgaaccagcaaatac
ttataccaattacagaatttaaaggtatgacgggctgttgcattgacata
gggatgggatggccaatatgcttgatacttgtattttcagttgatacttg
tattttcagttgatacttgtattttcagttgatacttgtattttcagttg
ttacagaattatttattcattcttccaacaaagaattatttagtatttag
agtttgccaggtaccactctgaagatcatacataccgtaaaaataaagag
agctcctgcctcgtccataatcattgttttttttttttttttttttagca
acacaaatgtaacagcagaattctcaacaccatagcaattagccattcct
tctcaaatatgtcgcctacgtctggtgaacttctccatctggggctgata
tgatatgatattcaatgtgaagaaaaagagtaggttcttcaagacagaac
tctaaccccatacataaagtaaaagtacaagatatgttggatgtaacaac
ataaaataaatgcaacagacgtcttgacttaggtgcacactgaaaatgct
aaacagaatctctaccttaataacttttctgtcctttctgtttcttcctt
tcaaataccagctggtacttctccagaggagagcattctcaaatctcttc
ttaccatctccaaaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141755320_141756536
seq2: B6Ng01-141A09.b_46_1233 (reverse)

seq1  GGAGACCAGAGTATCAATGCCAACTCTTAAGACAGCCCAAGAACTGGCTG  50
      |||| |||| ||||||||||  |||||||||||  | ||  |||||| ||
seq2  GGAG-CCAG-GTATCAATGC--ACTCTTAAGACGACGCA--AACTGG-TG  43

seq1  AAGGATAGAATAACTGACAGAGGGAATGTCTAGAGATCAAGATAACCTGT  100
      |  ||||| || |||| | || ||||||||||  ||||||||| ||||||
seq2  A--GATAGTAT-ACTGTC-GA-GGAATGTCTAAGGATCAAGAT-ACCTGT  87

seq1  GTCCGGCCTGACCCAGAGTTTGATCAATGTTATAAAACTACTGTATTTCA  150
      |||||| ||||||   || |||||| |||||||  ||||| |||||||||
seq2  GTCCGG-CTGACC---AGATTGATC-ATGTTAT--AACTA-TGTATTTCA  129

seq1  GGGCCAGAGATATGTCTCCGTAAATAAAGTGTTCAGTGCACAGGGAAGAA  200
       | ||| |||||||||| ||| ||| |||||||||||||||| |||||||
seq2  -GCCCAAAGATATGTCT-CGT-AATTAAGTGTTCAGTGCACA-GGAAGAA  175

seq1  GACCAGAATGCAGATCCCCAGAGCCCATGATTGGGAGGTGCGGTGCCGTA  250
      |||||||||||||||||||||||||||||||| |||||||| ||| ||||
seq2  GACCAGAATGCAGATCCCCAGAGCCCATGATT-GGAGGTGC-GTG-CGTA  222

seq1  CCTGTAAC-TCTAGCCTCTTGAAAGTAGAGATAGGAGATCTAGTCTGGAG  299
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGTAACTTCTAGCCTC-TGAAAGTAGAGATAGGAGATCTAGTCTGGAG  271

seq1  CAGGCTGGCAAACCAAACTATCCCAGTTGATGAGATCTGGGTTCGAATCA  349
      ||||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  CAGGCTGGC-AACCAAACTAT-CCAGTTGATGAGATCTGAGTTCGAATCA  319

seq1  GAGACCTACCCTCAAAGAATAATGTGGAAGAATGGTCCAAG-AAAACATC  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGACCTACCCTCAAAGAATAATGTGGAAGAATGGTCCAAGAAAAACATC  369

seq1  CTTAGGCCTCCACATGCCCTAATACATACGCACACGCTCACGTACGCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCTCCACATGCCCTAATACATACGCACACGCTCACGTACGCACC  419

seq1  CACTCATGCATGCATGCACGCACGCACACACGTGCGCATGCGCATGCGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGCATGCATGCACGCACGCACACACGTGCGCATGCGCATGCGCA  469

seq1  AAAAAAGGAAATTAAACATTTTTGAATCAGTATTTTCTGTACTGTGACCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAAATTAAACATTTTTGAATCAGTATTTTCTGTACTGTGACCT  519

seq1  CAATCTTTATTAGTGGAGTAAAATAATTTCTAAGACCTCTTTTTAAGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTATTAGTGGAGTAAAATAATTTCTAAGACCTCTTTTTAAGAAG  569

seq1  ACTGTAAGTGGGAAATGTGTCTTAAAGGATAATAAGACTATGCCTAGCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTGGGAAATGTGTCTTAAAGGATAATAAGACTATGCCTAGCTA  619

seq1  TAGAGACTGGGAGATAAAAACCTTTGGCTCTGCAGAAACAAGCTAGCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGGGAGATAAAAACCTTTGGCTCTGCAGAAACAAGCTAGCCTT  669

seq1  ACTTTACGTCCTGAAGCACAGCCTTCTCCCTGACATTGCTTGCTAGGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACGTCCTGAAGCACAGCCTTCTCCCTGACATTGCTTGCTAGGTAA  719

seq1  GACATCAATCAGCTCAGAAGACCTTGCCGGGCTTACTTATCTTCAGAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAATCAGCTCAGAAGACCTTGCCGGGCTTACTTATCTTCAGAACA  769

seq1  GTCCAAGACAAAAAGTGCTGGAATCCTCACATGGTCAACTCCTGAATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGACAAAAAGTGCTGGAATCCTCACATGGTCAACTCCTGAATTCT  819

seq1  TGATTTATTGTGTGCTTTGATCAGTGTGCTGTGGCGGCTCAGAAGCCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTGTGTGCTTTGATCAGTGTGCTGTGGCGGCTCAGAAGCCAGA  869

seq1  TCTCAGACCAGGTGGCACAAAGATGATGGGTATTTCTTAAAGCAAGAGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACCAGGTGGCACAAAGATGATGGGTATTTCTTAAAGCAAGAGGG  919

seq1  CACACTGACAAAGTGGTCCTTTAAAGGAGTTCACACATAGTCATAACTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACAAAGTGGTCCTTTAAAGGAGTTCACACATAGTCATAACTAA  969

seq1  GTGTAAGCCTGAGACATCCGGGAAGGTCATAAATAAAATATTCTCTAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGCCTGAGACATCCGGGAAGGTCATAAATAAAATATTCTCTAATT  1019

seq1  TGGCATGATTGTGAGCAAATTACTTAATTGTGTATCGATGGTGAAAGGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGATTGTGAGCAAATTACTTAATTGTGTATCGATGGTGAAAGGGT  1069

seq1  AATATGGCTAGGATTTCAAAGATAAAACATTTTCACTTCAATGAAAAATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTAGGATTTCAAAGATAAAACATTTTCACTTCAATGAAAAATC  1119

seq1  TGCCTCCCCTGGTGTCTCCGGGATCCTCACTAATCGTTATCAAAGTGACC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCCTGGTGTCTCCGGGATCCTCACTAATCGTTATCAAAGTGACC  1169

seq1  AGCATCATTTTGTGAATTC  1217
      |||||||||||||||||||
seq2  AGCATCATTTTGTGAATTC  1188

seq1: chr3_141628510_141629330
seq2: B6Ng01-141A09.g_68_886

seq1  GAATTCCAGAGGGAAAACAAAATCGCTTTCTCAAACTTATTGTTCCCTAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGAGGGAAAACAAAATCGCTTTCTCAAACTTATTGTTCCCTAA  50

seq1  TAGCTTTGACTCTAAATGTGTTGGGTGGAATTTATCACTTGTATGATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGACTCTAAATGTGTTGGGTGGAATTTATCACTTGTATGATAGC  100

seq1  CTAGCTTCTGAACTTGGAGATGGGTTAATATTTAATGAACCAGCAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTGAACTTGGAGATGGGTTAATATTTAATGAACCAGCAAATAC  150

seq1  TTATACCAATTACAGAATTTAAAGGTATGACGGGCTGTTGCATTGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAATTACAGAATTTAAAGGTATGACGGGCTGTTGCATTGACATA  200

seq1  GGGATGGGATGGCCAATATGCTTGATACTTGTATTTTCAGTTGATACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGATGGCCAATATGCTTGATACTTGTATTTTCAGTTGATACTTG  250

seq1  TATTTTCAGTTGATACTTGTATTTTCAGTTGATACTTGTATTTTCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTTGATACTTGTATTTTCAGTTGATACTTGTATTTTCAGTTG  300

seq1  TTACAGAATTATTTATTCATTCTTCCAACAAAGAATTATTTAGTATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAATTATTTATTCATTCTTCCAACAAAGAATTATTTAGTATTTAG  350

seq1  AGTTTGCCAGGTACCACTCTGAAGATCATACATACCGTAAAAATAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCAGGTACCACTCTGAAGATCATACATACCGTAAAAATAAAGAG  400

seq1  AGCTCCTGCCTCGTCCATAATCATTGTTTTTTTTTTTTTTTTTTTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCCTCGTCCATAATCATTGTTTTTTTTTTTTTTTTTTTTAGCA  450

seq1  ACACAAATGTAACAGCAGAATTCTCAACACCATAGCAATTAGCCATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGTAACAGCAGAATTCTCAACACCATAGCAATTAGCCATTCCT  500

seq1  TCTCAAATATGTCGCCTACGTCTGGTGAACTTCTCCATCTGGGGCTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATATGTCGCCTACGTCTGGTGAACTTCTCCATCTGGGGCTGATA  550

seq1  TGATATGATATTCAATGCTGAAGACAAAGAGTAGGTTCTACAAAGACAGA  600
      ||||||||||||||||| |||||| |||||||||||||| | ||||||||
seq2  TGATATGATATTCAATG-TGAAGAAAAAGAGTAGGTTCTTC-AAGACAGA  598

seq1  ACTCTAACCACATACATAAAGCAACGAGTACAAGATATGTT-GATGTAAC  649
      ||||||||| ||||||||||| ||  ||||||||||||||| ||||||||
seq2  ACTCTAACCCCATACATAAAGTAA-AAGTACAAGATATGTTGGATGTAAC  647

seq1  AACATAAAATAAATGCAACAGACGTCTTGACTTAGGTGCACACTGAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAATAAATGCAACAGACGTCTTGACTTAGGTGCACACTGAAAAT  697

seq1  GCTAAACAGAATCTTCTACCTTAAT-ACTTTTCTGTCCTTTCTGTTTCTT  748
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GCTAAACAGAATC-TCTACCTTAATAACTTTTCTGTCCTTTCTGTTTCTT  746

seq1  CCATTTCAAATACCAGCT-GTACTACTCCAGAGGCGAGCATTCTCTAATC  797
      || ||||||||||||||| ||||| ||||||||| |||||||||| ||||
seq2  CC-TTTCAAATACCAGCTGGTACTTCTCCAGAGGAGAGCATTCTCAAATC  795

seq1  TCTCCTTACCATCTCCAAGAACAC  821
      ||| |||||||||||||| |||||
seq2  TCTTCTTACCATCTCCAAAAACAC  819