BAC Information

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BAC

Clone NameB6Ng01-141F16
Chromosome3 (Build37)
Map Location 128,925,079 - 129,048,029
singlet/doubletdoublet
Overlap geneEnpep
Upstream geneEG668828, LOC100043393, EG668831, Pitx2
Downstream geneLOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F16.bB6Ng01-141F16.g
ACCDH939833DH939834
length874651
definitionDH939833|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F16, 5' end.DH939834|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,047,157 - 129,048,029)(128,925,079 - 128,925,727)
sequence
gaattcagcaattctagcagagagagagagagagagagagagagagagag
agagagagagagtcaaaagatgaagtgttatgattcaaactagtctgagt
tggctccctggaatggcatagaggcaggaacagctctgagctcacatctc
aaactacaagcagcaagcagagagagcaaactgggaatggagcaagattc
tgaaacctcgaagcccaccctgaatgatatgcttcccccagcaaggccac
acttcctaaatctctggaaacaataccatcgactggagatcaagtattca
aatgccagatccatgggggacagtctcgttcaaaccactgtaggtgcaca
tgggtaggcacaacacacctggagaaaacgtttgtctgtacatcagtgca
tgccgcttttagagttgcttactctttgacttcctatactttactatcat
gtcactaatatgctcgacaaccctacactaccttggtacagtgctatctc
tctgagaggaacacccccagtgcattgcagagccaacagaaatgtaacat
tcagccctgactagcatgtgctggggaaaaaggttccctcagtatagtgg
aagacttgatacaagatgcattcatctttgttgttgttgttgttgtttag
cacagtaggtttatttattacttttttttttttttacttatttacgttac
atcctgctcactgcttctctcccagtcactctttcccacagtcctttcct
ccaccacttctcttctgtgagtggggtggtgggtccccttgggcatccct
tcccccaccttggcacattaaatctctgtggaactaggagcatcctctcc
tttgaggctcgacaaggcagccca
gaattcaggttggtggaggctgggagaatggtgtataaaacctctatgta
cgttctcaccaccttctgtccctaaatctcagattggatgcccacaactt
gcttacaaaggtaattataagggaaagatagtggcaagccccagccctat
aagcagcctgattaaaagaggaatctgcttctccctgacctggcttccct
ccccccttaccccctcccacccccccacccccccccatctctcagggtac
tgaaaccagaagtcctttttagagcataacaacaccgccaacaaattaat
gggagaaaaagaaataccatctttaaagtcccaatattcctcaaagtcct
ataaattaacccttggagagcatcgaacccttttaaggagcgtctataaa
actcctgcgtgttctggtcagaggacaacctccccaccccctgttacagc
gtgaccaaaacaaaggtctgctctgcaatccacattcaaatccacacgac
actcgtccctagggctcctcagcctctgtcggcccggcccaccagagatc
cgagctagctgagtagtcccgggctggggagatttaactttttttttttt
tttaagctgaagagatttttggggcatgtaaccagatctgtgtctttatg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129047157_129048029
seq2: B6Ng01-141F16.b_50_923 (reverse)

seq1  TGGGCTGCCTTGTCTGGCCTCAGTGGGAGAGGATGCTCCTAGCTCCACAG  50
      ||||||||||||||  ||||||   ||||||||||||||||| |||||||
seq2  TGGGCTGCCTTGTCGAGCCTCA-AAGGAGAGGATGCTCCTAGTTCCACAG  49

seq1  AGATTTGATGTGCCAAGGTGGGGGGAGGGGATGCCCAAGGGGA-CCACCA  99
      |||||| |||||||||||| |||||| |||||||||||||||| ||||||
seq2  AGATTTAATGTGCCAAGGT-GGGGGAAGGGATGCCCAAGGGGACCCACCA  98

seq1  -CCCACTCACAGAAGAGGAGTGGTGGAGGGAAGGACTGTGGGAAAGGGTG  148
       |||||||||||||||| ||||||||||| |||||||||||||||| |||
seq2  CCCCACTCACAGAAGAGAAGTGGTGGAGGAAAGGACTGTGGGAAAGAGTG  148

seq1  ACTGGGAGAGAAGCAGTGAGCAGGATGTAACGTAAATAAGT-AAAAAAAA  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGGGAGAGAAGCAGTGAGCAGGATGTAACGTAAATAAGTAAAAAAAAA  198

seq1  AAAAAGTAATAAATAAACCTACTGTGCTAAACAACAACAACAACAACAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAATAAATAAACCTACTGTGCTAAACAACAACAACAACAACAAA  248

seq1  GATGAATGCATCTTGTATCAAGTCTTCCACTATACTGAGGGAACCTTTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCATCTTGTATCAAGTCTTCCACTATACTGAGGGAACCTTTTT  298

seq1  CCCCAGCACATGCTAGTCAGGGCTGAATGTTACATTTCTGTTGGCTCTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACATGCTAGTCAGGGCTGAATGTTACATTTCTGTTGGCTCTGC  348

seq1  AATGCACTGGGGGTGTTCCTCTCAGAGAGATAGCACTGTACCAAGGTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTGGGGGTGTTCCTCTCAGAGAGATAGCACTGTACCAAGGTAGT  398

seq1  GTAGGGTTGTCGAGCATATTAGTGACATGATAGTAAAGTATAGGAAGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTGTCGAGCATATTAGTGACATGATAGTAAAGTATAGGAAGTCA  448

seq1  AAGAGTAAGCAACTCTAAAAGCGGCATGCACTGATGTACAGACAAACGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGCAACTCTAAAAGCGGCATGCACTGATGTACAGACAAACGTT  498

seq1  TTCTCCAGGTGTGTTGTGCCTACCCATGTGCACCTACAGTGGTTTGAACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGGTGTGTTGTGCCTACCCATGTGCACCTACAGTGGTTTGAACG  548

seq1  AGACTGTCCCCCATGGATCTGGCATTTGAATACTTGATCTCCAGTCGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCCCCCATGGATCTGGCATTTGAATACTTGATCTCCAGTCGATG  598

seq1  GTATTGTTTCCAGAGATTTAGGAAGTGTGGCCTTGCTGGGGGAAGCATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTTCCAGAGATTTAGGAAGTGTGGCCTTGCTGGGGGAAGCATAT  648

seq1  CATTCAGGGTGGGCTTCGAGGTTTCAGAATCTTGCTCCATTCCCAGTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGTGGGCTTCGAGGTTTCAGAATCTTGCTCCATTCCCAGTTTG  698

seq1  CTCTCTCTGCTTGCTGCTTGTAGTTTGAGATGTGAGCTCAGAGCTGTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCTTGCTGCTTGTAGTTTGAGATGTGAGCTCAGAGCTGTTCC  748

seq1  TGCCTCTATGCCATTCCAGGGAGCCAACTCAGACTAGTTTGAATCATAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTATGCCATTCCAGGGAGCCAACTCAGACTAGTTTGAATCATAAC  798

seq1  ACTTCATCTTTTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCTTTTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  848

seq1  CTCTCTCTGCTAGAATTGCTGAATTC  873
      ||||||||||||||||||||||||||
seq2  CTCTCTCTGCTAGAATTGCTGAATTC  874

seq1: chr3_128925079_128925727
seq2: B6Ng01-141F16.g_69_719

seq1  GAATTCAGGTTGGTGGAGGCTGGGAGAATGGTGTATAAAACCTCTATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGGTGGAGGCTGGGAGAATGGTGTATAAAACCTCTATGTA  50

seq1  CGTTCTCACCACCTTCTGTCCCTAAATCTCAGATTGGATGCCCACAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCACCACCTTCTGTCCCTAAATCTCAGATTGGATGCCCACAACTT  100

seq1  GCTTACAAAGGTAATTATAAGGGAAAGATAGTGGCAAGCCCCAGCCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAAAGGTAATTATAAGGGAAAGATAGTGGCAAGCCCCAGCCCTAT  150

seq1  AAGCAGCCTGATTAAAAGAGGAATCTGCTTCTCCCTGACCTGGCTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCTGATTAAAAGAGGAATCTGCTTCTCCCTGACCTGGCTTCCCT  200

seq1  CCCCCCTTACCCCCTCCCACCCCCCCACCCCCCCCCATCTCTCAGGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTTACCCCCTCCCACCCCCCCACCCCCCCCCATCTCTCAGGGTAC  250

seq1  TGAAACCAGAAGTCCTTTTTAGAGCATAACAACACCGCCAACAAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGAAGTCCTTTTTAGAGCATAACAACACCGCCAACAAATTAAT  300

seq1  GGGAGAAAAAGAAATACCATCTTTAAAGTCCCAATATTCCTCAAAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAAAGAAATACCATCTTTAAAGTCCCAATATTCCTCAAAGTCCT  350

seq1  ATAAATTAACCCGTGGAGAGCATCGAACCCTTTTAAGGAGCGTCTATAAA  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAACCCTTGGAGAGCATCGAACCCTTTTAAGGAGCGTCTATAAA  400

seq1  ACTCCTGCGTGTTCTGGTCAGAGGACAACCTCCCCACCCCCTGTTACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCGTGTTCTGGTCAGAGGACAACCTCCCCACCCCCTGTTACAGC  450

seq1  GTGACCAAAACAAAGGTCTGCTCTGCAATCCACATTCAAATCCACACGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAAACAAAGGTCTGCTCTGCAATCCACATTCAAATCCACACGAC  500

seq1  ACTCGTCCCTA-GGCTCCCCAGCCTCTGTCGGCCCGGCCCACCAGAGATC  549
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  ACTCGTCCCTAGGGCTCCTCAGCCTCTGTCGGCCCGGCCCACCAGAGATC  550

seq1  CGAGCTAGCTGAGTAGTCCC-GGCT-GGGAGATTTAACTTTTTTTTTTTT  597
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  CGAGCTAGCTGAGTAGTCCCGGGCTGGGGAGATTTAACTTTTTTTTTTTT  600

seq1  TTTTAGAGCTGAGGAGA-AAGGGGGGCATGTAACCAGATCAGTGTCTTTA  646
      |||   |||||| ||||     |||||||||||||||||| |||||||||
seq2  TTT--AAGCTGAAGAGATTTTTGGGGCATGTAACCAGATCTGTGTCTTTA  648

seq1  TGA  649
      |||
seq2  TGA  651