BAC Information

Click to search

BAC

Clone NameB6Ng01-141P16
Chromosome3 (Build37)
Map Location 6,640,190 - 6,641,261
singlet/doubletsinglet
Overlap geneLOC100039349
Upstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik
Downstream geneOlfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141P16.bB6Ng01-141P16.g
ACCDH940296DH940297
length1,0971,178
definitionDH940296|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P16, 5' end.DH940297|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtctctgttccccaaatttttaatagggttatgtggttttc
tggagtctatcttcttgagttctttgtatatattggatattagccttcta
tctgacttaggattggtaaagatcttttcccaatctgttggttgcctttt
tgtcttactgagtgttctttgccttacagaatctttccaatttcatgagg
ttaatttgtcaattcttgatcttatagcacaagccattattgttctgttc
aggaacttttcccctgtgcccatatgtacaattttaaattcatcaatttc
atcgtttctagcatttttgtaaaaattttgttactccattattacataat
aaatactattgttattacataataaattatatatatatataataaattat
atatatatatatatatactcatatccttaaaaacatttattttctttatc
tatttctccattcatgacttatttatattctgtaacttagcaattgtgca
tcatgctatggtaagaatgagtgagaaagtatctccactatgtggtattc
atagctcattgtaaattattttaatcactatacttgacaggcataactta
aggaagcacacattcattttaccacagtcttacatgagtataatatttat
tgtcaggaaagacacatagagcaattaaattcatggcagaagaaaactgt
ggtagagtgctacacaaagagcttcagaaaagagaaaggtaattaaggtc
tgctccagtgatctatttccactagctggtatctacctcctaaagattcc
atgggttaaaaagacaatgctaaagggtaaggacgaagtatggaaaatat
aattatatgaggaacatttcatgttcaaaccataaaattcttgtagagat
ccattaggacccatgtctatcagagaacataagatgggtgactctgcttt
cagagttctaaagtcttagcaactttatcatcagcaaagtctatgtgtct
cagtatatactgtaatctagaaatttcttgttcttgagtcataaaataaa
aaatctataatcctcatgggagagagtaaacatccccatttccaaag
gaattctcatctgaggaataccgaatggtagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcatgtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccatttttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctagccaaa
tggatggacctgaagggcatcatcctgagtgaggtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgctaaactcatgaaattcaag
aagaaggaagaccaaagtgtggacactttaccccttcctagaaatgggaa
caaaacacccatggaaggagttacagagaccaaatttggagctgtgacga
aaggatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccatcgcacacactagcaaaattttgctggaa
aggacccagatatagcttttctcttgtgagactatgccgcggcctagcaa
acaaagaagtggatgatcacagtcagctatggaatgaatcacacggctcc
aatgcaggagctagagatattaccaagagctaagggactgcaaccctata
ggtggaacaacaatatgaactatcagtccccagagctctttgtctctagc
tgcatagcatcaaagttggcctcgtcgctcatcacttgcaaagagaggcc
cattgggacttgcacttagatcctcagtacagggaatgccagggctaaaa
tgaagaatggggtgtgtttgagcatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6640190_6641261
seq2: B6Ng01-141P16.b_84_1143 (reverse)

seq1  CTTTGTAAAATGGGGATGTTTACTCTCTCCCATTGAGATTATAGATTTTT  50
      |||||  ||||||||||||||||||||||||||   ||||||||| ||||
seq2  CTTTG-GAAATGGGGATGTTTACTCTCTCCCATGAGGATTATAGA-TTTT  48

seq1  TTATTTTAATGAACTCATAGACAAGAAAATTTCCTAGATTTCAGTATATA  100
      ||||||| ||| |||||   ||||||||  || ||||||| |||||||||
seq2  TTATTTT-ATG-ACTCAAGAACAAGAAA--TTTCTAGATTACAGTATATA  94

seq1  CTGTGGACACATAGACTTTTGGCTGATGATAAAGTTGCTAAGACTTTTAG  150
      |||  ||||||||||||||  ||||||||||||||||||||||| |||||
seq2  CTG-AGACACATAGACTTT--GCTGATGATAAAGTTGCTAAGAC-TTTAG  140

seq1  AACTCTTGAAAGCAGAGTCACCCATCTTATGTTCTCTGATAGACATGGGT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTC-TGAAAGCAGAGTCACCCATCTTATGTTCTCTGATAGACATGGGT  189

seq1  CCTAATGGATCTCTGACAAGAATTTTATGGTTTGAACATGAAATGTTCCT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTAATGGATCTCT-ACAAGAATTTTATGGTTTGAACATGAAATGTTCCT  238

seq1  CATATAATTATATTTTCCATACTTCGTCCTTACCCTTTAGCATTGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTATATTTTCCATACTTCGTCCTTACCCTTTAGCATTGTCTTT  288

seq1  TTAACCCATGGAATCTTTAGGAGGTAGATACCAGCTAGTGGAAATAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCATGGAATCTTTAGGAGGTAGATACCAGCTAGTGGAAATAGATC  338

seq1  ACTGGAGCAGACCTTAATTACCTTTCTCTTTTCTGAAGCTCTTTGTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCAGACCTTAATTACCTTTCTCTTTTCTGAAGCTCTTTGTGTAG  388

seq1  CACTCTACCACAGTTTTCTTCTGCCATGAATTTAATTGCTCTATGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACCACAGTTTTCTTCTGCCATGAATTTAATTGCTCTATGTGTCT  438

seq1  TTCCTGACAATAAATATTATACTCATGTAAGACTGTGGTAAAATGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACAATAAATATTATACTCATGTAAGACTGTGGTAAAATGAATGT  488

seq1  GTGCTTCCTTAAGTTATGCCTGTCAAGTATAGTGATTAAAATAATTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTTAAGTTATGCCTGTCAAGTATAGTGATTAAAATAATTTACA  538

seq1  ATGAGCTATGAATACCACATAGTGGAGATACTTTCTCACTCATTCTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATGAATACCACATAGTGGAGATACTTTCTCACTCATTCTTACC  588

seq1  ATAGCATGATGCACAATTGCTAAGTTACAGAATATAAATAAGTCATGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGATGCACAATTGCTAAGTTACAGAATATAAATAAGTCATGAAT  638

seq1  GGAGAAATAGATAAAGAAAATAAATGTTTTTAAGGATATGAGTATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATAGATAAAGAAAATAAATGTTTTTAAGGATATGAGTATATATA  688

seq1  TATATATATATAATTTATTATATATATATATAATTTATTATGTAATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATAATTTATTATATATATATATAATTTATTATGTAATAACA  738

seq1  ATAGTATTTATTATGTAATAATGGAGTAACAAAATTTTTACAAAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTTATTATGTAATAATGGAGTAACAAAATTTTTACAAAAATGCT  788

seq1  AGAAACGATGAAATTGATGAATTTAAAATTGTACATATGGGCACAGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGATGAAATTGATGAATTTAAAATTGTACATATGGGCACAGGGGA  838

seq1  AAAGTTCCTGAACAGAACAATAATGGCTTGTGCTATAAGATCAAGAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGAACAGAACAATAATGGCTTGTGCTATAAGATCAAGAATTG  888

seq1  ACAAATTAACCTCATGAAATTGGAAAGATTCTGTAAGGCAAAGAACACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAACCTCATGAAATTGGAAAGATTCTGTAAGGCAAAGAACACTC  938

seq1  AGTAAGACAAAAAGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACAAAAAGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCC  988

seq1  TAAGTCAGATAGAAGGCTAATATCCAATATATACAAAGAACTCAAGAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGATAGAAGGCTAATATCCAATATATACAAAGAACTCAAGAAGA  1038

seq1  TAGACTCCAGAAAACCACATAA  1072
      ||||||||||||||||||||||
seq2  TAGACTCCAGAAAACCACATAA  1060