BAC Information

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BAC

Clone NameB6Ng01-142B12
Chromosome3 (Build37)
Map Location 76,792,670 - 76,898,333
singlet/doubletdoublet
Overlap geneLOC100041635
Upstream geneFstl5, LOC100041625
Downstream geneDnmt3a-ps1, EG626461, LOC667526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B12.bB6Ng01-142B12.g
ACCDH940378DH940379
length614950
definitionDH940378|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B12, 5' end.DH940379|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,897,720 - 76,898,333)(76,792,670 - 76,793,628)
sequence
gaattcattattatgataatcattgttacagcataactattggtatttgg
ccttaatcacagggataatttttaacttttgctgtgataatttgttacag
gagaaaagaaggaacagcaagcccaaacaaatacaattcagtggtggaca
aagagtacccaacagctaagctatagatgatagttggagactacattgaa
accaaggaaaggtatgtgggcacatgggaagttccaaaactcttggtgga
tggcagaggattgttgcacacataggtatcaaatacatcctaggtcagat
atagtcaaaagagccacaattaagagcagatatccacaatttataatggt
gaaggtgtcaacccttcgagtaagtccacctatttctgtatgttcttcac
aggtgtaagagatttcacaattcacaaattccatggaatgctgcagacgg
aggaaggagacataagctgagaaatatggtattcataacactcaaagcaa
gattctgagtagaaattttggccttaaatatgaatctaacaaaagaagaa
tacatatcaatcctactaaagaggagcaggtgtgtgtgtgtgtgtgtgtg
tatgtgtgtgtgtg
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattaatccc
ctatctgatttaggataggtaaagatcctttaccaatctgttggtggttt
ttttttttttttttttatcttattgatggtgtcttttgccttgcagaagc
tttgcagtttcatgaggtcccatttgtcaattctcggtcttacagcgcaa
ttttttttatgacagtagaaactctactcatactaaattattttctttct
ttttgtattcctcaatggtatcacatacaatgaaactgtttatttcagta
attttcttcatatgaacaaaagaagtgcaactcagacgaagatggaccaa
ttattgtaaagaataccaaatttgaaacataaaaagtctttaatttatac
tttcatttactgaaaggcacactgatgttatttttcttaaattcttactt
tttgttcaaactcttagttgaaaataaatgcaggggtaggttataaaaaa
tattgtataacagattatgccacacaagacaggagaattaaagacttata
taaaaaaatcttatgagcaagagctcaggtttagaaaataccaatatagt
gttgatagatagaactatgttaaatctcttttctttgaaaatatattttg
gtaaggttcataaatcaacataaggaaaaatattaaaaatagatctcact
tttaatgtagtcaccaaattagtataaaatgggcatgtttgaattgcagg
aggaaatttgacatatggacttgaaatagagaaatagaaagacataaatt
aaaatttaaacagtatctatgaagatatcctaaaataaagatagtatggg
accatactggcccaaatacatccactaagattataaactttgaaagcttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76897720_76898333
seq2: B6Ng01-142B12.b_45_658 (reverse)

seq1  CACACACACACATACACACACACACACACACACACCTGCTCCTCTTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACACACACACACACACACACCTGCTCCTCTTTAGT  50

seq1  AGGATTGATATGTATTCTTCTTTTGTTAGATTCATATTTAAGGCCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGATATGTATTCTTCTTTTGTTAGATTCATATTTAAGGCCAAAAT  100

seq1  TTCTACTCAGAATCTTGCTTTGAGTGTTATGAATACCATATTTCTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCAGAATCTTGCTTTGAGTGTTATGAATACCATATTTCTCAGCT  150

seq1  TATGTCTCCTTCCTCCGTCTGCAGCATTCCATGGAATTTGTGAATTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCCTTCCTCCGTCTGCAGCATTCCATGGAATTTGTGAATTGTGA  200

seq1  AATCTCTTACACCTGTGAAGAACATACAGAAATAGGTGGACTTACTCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTACACCTGTGAAGAACATACAGAAATAGGTGGACTTACTCGAA  250

seq1  GGGTTGACACCTTCACCATTATAAATTGTGGATATCTGCTCTTAATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGACACCTTCACCATTATAAATTGTGGATATCTGCTCTTAATTGTG  300

seq1  GCTCTTTTGACTATATCTGACCTAGGATGTATTTGATACCTATGTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTGACTATATCTGACCTAGGATGTATTTGATACCTATGTGTGCA  350

seq1  ACAATCCTCTGCCATCCACCAAGAGTTTTGGAACTTCCCATGTGCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTCTGCCATCCACCAAGAGTTTTGGAACTTCCCATGTGCCCACA  400

seq1  TACCTTTCCTTGGTTTCAATGTAGTCTCCAACTATCATCTATAGCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCTTGGTTTCAATGTAGTCTCCAACTATCATCTATAGCTTAGC  450

seq1  TGTTGGGTACTCTTTGTCCACCACTGAATTGTATTTGTTTGGGCTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTACTCTTTGTCCACCACTGAATTGTATTTGTTTGGGCTTGCTG  500

seq1  TTCCTTCTTTTCTCCTGTAACAAATTATCACAGCAAAAGTTAAAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTTCTCCTGTAACAAATTATCACAGCAAAAGTTAAAAATTAT  550

seq1  CCCTGTGATTAAGGCCAAATACCAATAGTTATGCTGTAACAATGATTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATTAAGGCCAAATACCAATAGTTATGCTGTAACAATGATTATC  600

seq1  ATAATAATGAATTC  614
      ||||||||||||||
seq2  ATAATAATGAATTC  614

seq1: chr3_76792670_76793628
seq2: B6Ng01-142B12.g_70_1019

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAATCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTACCAATCTGTTGGTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTACCAATCTGTTGGTGGTTT  150

seq1  TTTTTTTTTTTTTTTTATCTTATTGATGGTGTCTTTTGCCTTGCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTATCTTATTGATGGTGTCTTTTGCCTTGCAGAAGC  200

seq1  TTTGCAGTTTCATGAGGTCCCATTTGTCAATTCTCGGTCTTACAGCGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTTCATGAGGTCCCATTTGTCAATTCTCGGTCTTACAGCGCAA  250

seq1  TTTTTTTTATGACAGTAGAAACTCTACTCATACTAAATTATTTTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATGACAGTAGAAACTCTACTCATACTAAATTATTTTCTTTCT  300

seq1  TTTTGTATTCCTCAATGGTATCACATACAATGAAACTGTTTATTTCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTCCTCAATGGTATCACATACAATGAAACTGTTTATTTCAGTA  350

seq1  ATTTTCTTCATATGAACAAAAGAAGTGCAACTCAGACGAAGATGGACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCATATGAACAAAAGAAGTGCAACTCAGACGAAGATGGACCAA  400

seq1  TTATTGTAAAGAATACCAAATTTGAAACATAAAAAGTCTTTAATTTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAAAGAATACCAAATTTGAAACATAAAAAGTCTTTAATTTATAC  450

seq1  TTTCATTTACTGAAAGGCACACTGATGTTATTTTTCTTAAATTCTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTACTGAAAGGCACACTGATGTTATTTTTCTTAAATTCTTACTT  500

seq1  TTTGTTCAAACTCTTAGTTGAAAATAAATGCAGGGGTAGGTTATAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAAACTCTTAGTTGAAAATAAATGCAGGGGTAGGTTATAAAAAA  550

seq1  TATTGTATAACAGATTATGCCACACAAGACAGGAGAATTAAAGACTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATAACAGATTATGCCACACAAGACAGGAGAATTAAAGACTTATA  600

seq1  TAAAAAAATCTTATGAGCAAGAGCTCAGGTTTAGAAAATACCAATATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATCTTATGAGCAAGAGCTCAGGTTTAGAAAATACCAATATAGT  650

seq1  GTTGATAGATAGAACTATGTTAAATCTCTTTTCTTTGAAAATATATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGATAGAACTATGTTAAATCTCTTTTCTTTGAAAATATATTTTG  700

seq1  GTAAGGTTCATAAATCAACATAAGGAAAAATATTAAAAATAGATCTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTTCATAAATCAACATAAGGAAAAATATTAAAAATAGATCTCACT  750

seq1  TTTAATGTAGTCACCAAATTAGTATAAAATGGGCATGTTTGAATTGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAGTCACCAAATTAGTATAAAATGGGCATGTTTGAATTGCAGG  800

seq1  AGGAAATTTGACATATGGACTTGAAAATAGAGAAATAGAAAAGACATAAA  850
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  AGGAAATTTGACATATGGACTTG-AAATAGAGAAATAG-AAAGACATAAA  848

seq1  TTAAAAATTTAAAACAGTATCTATGAAGATATCCTAAAATAAAGATAGTA  900
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAA--TTTAAACAGTATCTATGAAGATATCCTAAAATAAAGATAGTA  896

seq1  TGGAACCATAACTGGCCCAAATACATCCACTAAAAGATTATAAACTTTTG  950
      ||| ||||| |||||||||||||||||||||  |||||||||||||||  
seq2  TGGGACCAT-ACTGGCCCAAATACATCCACT--AAGATTATAAACTTT--  941

seq1  AAAAGCTTT  959
       ||||||||
seq2  GAAAGCTTT  950