BAC Information

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BAC

Clone NameB6Ng01-142H06
Chromosome3 (Build37)
Map Location 89,002,445 - 89,167,338
singlet/doubletdoublet
Overlap geneGba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1
Upstream geneAI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik
Downstream geneDcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142H06.bB6Ng01-142H06.g
ACCDH940648DH940649
length1,171419
definitionDH940648|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H06, 5' end.DH940649|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,166,146 - 89,167,338)(89,002,445 - 89,002,869)
sequence
gaattcaagatttcctgcctacacagtatgttccatgtcagtctgggttg
ccaaggaatggccctggctagaggtttttaggttacaaaatacctaccac
aactccacctagcacatctctgtgcattattctcaaagaccagagaagaa
acatgtctctcctgcccctgttcagaaaccaggaaaactttctaggaggc
atttcacacctctctttacagtaactgataccttccctaaatctgtccga
acccaggggcatggagtcaatgtcactagcctattgaacacacagagtct
ttggccatgaggtcgagactacagaagactgttttcttgtctgacttctg
tcctggggacgacctaacctcacatgtgtacaagtcccaggtgtgctgac
gagttaggccttatttgaaggggttaaagggtcatgtctactccacatca
ggacttcaggctcccatgcttctaaaatgtcacctctcctcgctgctcca
atctgcccccaccttgtctgccccttagccctgggtcctgcagtgaaaag
ggggtgtggcttctcttccactcctttctcccctcttttcctcctacctt
gttttgaagcagtctctgatagtttcatcatatatgcatataatgaattt
agtccctgtcccctccctttttttttttttttgcttttccaagcagggtt
cttctgtgtagccctggctgtcctggtattcaccctgtagaccaggctgc
cctggaactaacagagatccacctgcctctgccctctgagtgctgggagt
aaaggcgtgcactaccacacactcccctccccctgccccacccccacccg
tgaaacctttcttcccaataagtcctcctccgctttgcacggcttcattt
ctgtgtttaattagaattccttgagcaaacatgggtagggagttatttac
tgggagcagggcagtttatcagtagctacacactcctctggctctctccc
actcactcaggccaccacagcacctgtatctttccccacttaccaggtct
caggtagcctcagctaggatggactcttgcttctctggctctcaccttgc
aggtgctagagtaaagggcttccttcgtgtcttcgaagtccgaaggggaa
gagagataagggaaggataaa
caggtcagccagatctagttgtgagatccaacctcagaacaacaccaaag
aaggaaagagaaagaaaacaaaaaagaaaaaaaaaagagaagaaatgaaa
ggacccattctgggttggtccacgatgtctgtttcattcactcttatact
ctgtgttgtataaatcaagttaataccactgctgctgccccagaggacct
ggattctaaaagtgcctcacaagtgcctgtaactccagtggatccaacat
cctctttcctcttgtggcaccaggcattcacatggtgcacagacatacat
gtaggtaaaacacccatacaacaaaaataataaataaagcctagtgtaaa
tgaaataaagagataaaataactaagtataaatacacacttagaaatcag
ctggggaggggggggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89166146_89167338
seq2: B6Ng01-142H06.b_41_1211 (reverse)

seq1  TTTATCCTTTCCCCTCTAATTCTTCCTCTCCCTTTCGGACATCGGAAGAC  50
      |||||||||  |||| ||  |||  || |||| ||||||| || ||||||
seq2  TTTATCCTT--CCCT-TA--TCTCTCT-TCCCCTTCGGACTTC-GAAGAC  43

seq1  ACAGAAGGGAAGCCTGTAACTCTAGCACTTGCAAGGTGAGAGCAAGGAGA  100
      || ||| |||||||  | |||||||||| |||||||||||||| | ||||
seq2  AC-GAA-GGAAGCCCTTTACTCTAGCACCTGCAAGGTGAGAGCCA-GAGA  90

seq1  AGCACGAGTTTCAATCCTAGCTGAGGCTACCTGAGACCTTGTTTAGGTGG  150
      |||| |||  || |||||||||||||||||||||||||| |  || ||||
seq2  AGCAAGAG--TCCATCCTAGCTGAGGCTACCTGAGACCTGG--TAAGTGG  136

seq1  GGAAAGGATACAGGGTGCTGTGGTGGGCTGAGTGGAGGTGGGGAGGAGAG  200
      ||||| |||||| ||||||||||||| |||||||   |||    ||||||
seq2  GGAAA-GATACA-GGTGCTGTGGTGGCCTGAGTG--AGTG----GGAGAG  178

seq1  -GCCAGAGGGAGTGGTGTAGCTACTGATAAACTGCCCTTGCT-CCAGTAA  248
       |||||| ||||| ||||||||||||||||||||||| |||| |||||||
seq2  AGCCAGA-GGAGT-GTGTAGCTACTGATAAACTGCCC-TGCTCCCAGTAA  225

seq1  ATAACTTCCTACCCATGTTTGCTCAAGGAATTCTAATTAAACACAG-AAT  297
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAACTCCCTACCCATGTTTGCTCAAGGAATTCTAATTAAACACAGAAAT  275

seq1  GAAGCCGTGCAAAGCGGAGGAGGACTTATTGGGAAGAAAGGTTTCACGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGTGCAAAGCGGAGGAGGACTTATTGGGAAGAAAGGTTTCACGGG  325

seq1  TGGGGGTGGGGCAGGGGGAGGGGAGTGTGTGGTAGTGCACGCCTTTACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGGGCAGGGGGAGGGGAGTGTGTGGTAGTGCACGCCTTTACTC  375

seq1  CCAGCACTCAGAGGGCAGAGGCAGGTGGATCTCTGTTAGTTCCAGGGCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCAGAGGGCAGAGGCAGGTGGATCTCTGTTAGTTCCAGGGCAG  425

seq1  CCTGGTCTACAGGGTGAATACCAGGACAGCCAGGGCTACACAGAAGAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGGGTGAATACCAGGACAGCCAGGGCTACACAGAAGAACC  475

seq1  CTGCTTGGAAAAGCAAAAAAAAAAAAAAAGGGAGGGGACAGGGACTAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGAAAAGCAAAAAAAAAAAAAAAGGGAGGGGACAGGGACTAAAT  525

seq1  TCATTATATGCATATATGATGAAACTATCAGAGACTGCTTCAAAACAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATATGCATATATGATGAAACTATCAGAGACTGCTTCAAAACAAGG  575

seq1  TAGGAGGAAAAGAGGGGAGAAAGGAGTGGAAGAGAAGCCACACCCCCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAAAAGAGGGGAGAAAGGAGTGGAAGAGAAGCCACACCCCCTTT  625

seq1  TCACTGCAGGACCCAGGGCTAAGGGGCAGACAAGGTGGGGGCAGATTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAGGACCCAGGGCTAAGGGGCAGACAAGGTGGGGGCAGATTGGA  675

seq1  GCAGCGAGGAGAGGTGACATTTTAGAAGCATGGGAGCCTGAAGTCCTGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAGGAGAGGTGACATTTTAGAAGCATGGGAGCCTGAAGTCCTGAT  725

seq1  GTGGAGTAGACATGACCCTTTAACCCCTTCAAATAAGGCCTAACTCGTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTAGACATGACCCTTTAACCCCTTCAAATAAGGCCTAACTCGTCA  775

seq1  GCACACCTGGGACTTGTACACATGTGAGGTTAGGTCGTCCCCAGGACAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGGGACTTGTACACATGTGAGGTTAGGTCGTCCCCAGGACAGA  825

seq1  AGTCAGACAAGAAAACAGTCTTCTGTAGTCTCGACCTCATGGCCAAAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACAAGAAAACAGTCTTCTGTAGTCTCGACCTCATGGCCAAAGAC  875

seq1  TCTGTGTGTTCAATAGGCTAGTGACATTGACTCCATGCCCCTGGGTTCGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTTCAATAGGCTAGTGACATTGACTCCATGCCCCTGGGTTCGG  925

seq1  ACAGATTTAGGGAAGGTATCAGTTACTGTAAAGAGAGGTGTGAAATGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTAGGGAAGGTATCAGTTACTGTAAAGAGAGGTGTGAAATGCCT  975

seq1  CCTAGAAAGTTTTCCTGGTTTCTGAACAGGGGCAGGAGAGACATGTTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGTTTTCCTGGTTTCTGAACAGGGGCAGGAGAGACATGTTTCT  1025

seq1  TCTCTGGTCTTTGAGAATAATGCACAGAGATGTGCTAGGTGGAGTTGTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTCTTTGAGAATAATGCACAGAGATGTGCTAGGTGGAGTTGTGG  1075

seq1  TAGGTATTTTGTAACCTAAAAACCTCTAGCCAGGGCCATTCCTTGGCAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTGTAACCTAAAAACCTCTAGCCAGGGCCATTCCTTGGCAAC  1125

seq1  CCAGACTGACATGGAACATACTGTGTAGGCAGGAAATCTTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGACATGGAACATACTGTGTAGGCAGGAAATCTTGAATTC  1171

seq1: chr3_89002445_89002869
seq2: B6Ng01-142H06.g_68_492

seq1  GAATTCCAGGTCAGCCAGATCTAGTTGTGAGATCCAACCTCAGAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCAGATCTAGTTGTGAGATCCAACCTCAGAACAACA  50

seq1  CCAAAGAAGGAAAGAGAAAGAAAACAAAAAAGAAAAAAAAAAGAGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAGGAAAGAGAAAGAAAACAAAAAAGAAAAAAAAAAGAGAAGAA  100

seq1  ATGAAAGGACCCATTCTGGGTTGGTCCACGATGTCTGTTTCATTCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGACCCATTCTGGGTTGGTCCACGATGTCTGTTTCATTCACTCT  150

seq1  TATACTCTGTGTTGTATAAATCAAGTTAATACCACTGCTGCTGCCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTGTGTTGTATAAATCAAGTTAATACCACTGCTGCTGCCCCAGA  200

seq1  GGACCTGGATTCTAAAAGTGCCTCACAAGTGCCTGTAACTCCAGTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGATTCTAAAAGTGCCTCACAAGTGCCTGTAACTCCAGTGGATC  250

seq1  CAACATCCTCTTTCCTCTTGTGGCACCAGGCATTCACATGGTGCACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTCTTTCCTCTTGTGGCACCAGGCATTCACATGGTGCACAGAC  300

seq1  ATACATGTAGGTAAAACACCCATACAACAAAAATAATAAATAAAGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTAGGTAAAACACCCATACAACAAAAATAATAAATAAAGCCTAG  350

seq1  TGTAAATGAAATAAAGAGATAAAATAACTAAGTATAAATACACACTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAAATAAAGAGATAAAATAACTAAGTATAAATACACACTTAGA  400

seq1  AATCAGCTGGGGAGGGGGGGGTGTT  425
      |||||||||||||||||||||||||
seq2  AATCAGCTGGGGAGGGGGGGGTGTT  425