BAC Information

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BAC

Clone NameB6Ng01-142N19
Chromosome1 (Build37)3 (Build37)
Map Location 165,539,055 - 165,539,956150,038,671 - 150,039,081
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N19.bB6Ng01-142N19.g
ACCDH940952DH940953
length900849
definitionDH940952|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N19, 5' end.DH940953|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(165,539,055 - 165,539,956)(150,038,671 - 150,039,081)
sequence
gaattcagtaagactaaggccatgacacatgtctgagagagcttccttga
gattgtttttaattttttcaaacaaagcataccagaacgctttactacca
cttactgaagaacaaagggcgtgagctctaaacacaaacatcctgcgttc
cttccagaactttcctgggatcttttagtcaatgaaccttcctggtcaat
atttctatttgagacctggttgtttcatggttaaaaacaaaaggaaacaa
aaacaatgacaaaataaaacctcaccttttccccctcagagaaattaata
tgattaggatatttatttaacatttttcaaaagaaagaaaacaggagtca
aatttctttctctatctctcttcttctcaggtatttttcttctctttatt
tcatttttagtcatttcctctactgtcttagtcttaaaaacaaacaaaca
aacaatttatcagtcctagtttctgtctgacttacacgttctctaatgac
atttttctgttcacccagggtgttgcttattgttgtcttgtgtttggtct
tgatattgtcttctccactccatttctctcagtcaatgttttattgacat
ctatctagccaattccttggtcatttgaagcccattaaccagaccacact
ccagcttctctctctctctctctctctctctctctctctctctctcactc
tctcacgcttctccccccccccccctatctatctataattccaatgggtg
tgaatgtgcaatgtttctatgttatttaagatagcttggaaaacagagga
tcacaaggaggaagaagacttagacatatgatcaccaccaccgaacattt
ctttgagagatcatattgagatttcccttcaaattgttagcctagtatga

gaattctttgttcagttctgagccccatttttaaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
gataagtggatattagcccaaaacctaggatacccaagatataagataca
atttgctaaacacataaaactcaagaagaacgaagactgaagtgtggaca
ctatgcccctccttagaattgggaacaaaacacccatggaaggacttaca
gagacaaagtttggatctgagacgaaaggatggaccatctagagactgcc
atatccagggatccaccccataatcagcttccaaacgctgacaccattgc
atacactagcaagattttatcgaaaggacccagatgtagctgtctcttgt
gagactatgccggggcctagcaaacacagaagtggatgctcacagtcagc
tattggatggatcacagggcttccaatggaggagctagagaaagtaccca
aggagctaaagggatctgcaaccctataggtggaactacattatgaacta
accagtaccccggagctcttgattctagctgcatatgtatcaaaagatgg
cctagtcggtcatcactggaagagaggcccattggacacgcaactgtata
tgccccagtacaggggaacgccagggccaaaaaaatgggaatgagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165539055_165539956
seq2: B6Ng01-142N19.b_46_945 (reverse)

seq1  TCATACTATGCCAAACAAATTTGATAGGGAAATCTCAATATGAGCTCTCA  50
      |||||||| || ||   ||||||| |||||||||||||||||| ||||||
seq2  TCATACTAGGCTAA--CAATTTGA-AGGGAAATCTCAATATGATCTCTCA  47

seq1  TGAGAAAAGTAAGAGGTTGAAGATCATAAGGTCAAGGCTTCCTTCTCTTT  100
        ||||| ||  |  | ||  ||||||| |   ||| |||| | ||| ||
seq2  -AAGAAATGTTCGGTGGTGGTGATCATATGTCTAAGTCTTCTTCCTCCTT  96

seq1  GTGATCCACAGTTTTCAAAGCTAACATAAATAACCTCAAAAAATTGCAC-  149
      ||||||| | |||||| |||||| | |||||||| |  ||| ||||||| 
seq2  GTGATCCTCTGTTTTCCAAGCTATCTTAAATAACATAGAAACATTGCACA  146

seq1  TTAAAAGCCATTGGAATTATAGATAGATAGAGAGAGAGAGAAAG-AGAGA  198
      || | | ||||||||||||||||||||||| | | | | |  || || | 
seq2  TTCACACCCATTGGAATTATAGATAGATAGGGGGGGGGGGGGAGAAGCGT  196

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAG  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAG  246

seq1  CTGGAGTGTGGTCTGGTTAATGGGCTTCAAATGACCAAGGAATTGGCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGTGGTCTGGTTAATGGGCTTCAAATGACCAAGGAATTGGCTAG  296

seq1  ATAGATGTCAATAAAACATTGACTGAGAGAAATGGAGTGGAGAAGACAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTCAATAAAACATTGACTGAGAGAAATGGAGTGGAGAAGACAAT  346

seq1  ATCAAGACCAAACACAAGACAACAATAAGCAACACCCTGGGTGAACAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACCAAACACAAGACAACAATAAGCAACACCCTGGGTGAACAGAA  396

seq1  AAATGTCATTAGAGAACGTGTAAGTCAGACAGAAACTAGGACTGATAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTAGAGAACGTGTAAGTCAGACAGAAACTAGGACTGATAAAT  446

seq1  TGTTTGTTTGTTTGTTTTTAAGACTAAGACAGTAGAGGAAATGACTAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTTTAAGACTAAGACAGTAGAGGAAATGACTAAAA  496

seq1  ATGAAATAAAGAGAAGAAAAATACCTGAGAAGAAGAGAGATAGAGAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAGAGAAGAAAAATACCTGAGAAGAAGAGAGATAGAGAAAGA  546

seq1  AATTTGACTCCTGTTTTCTTTCTTTTGAAAAATGTTAAATAAATATCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACTCCTGTTTTCTTTCTTTTGAAAAATGTTAAATAAATATCCTA  596

seq1  ATCATATTAATTTCTCTGAGGGGGAAAAGGTGAGGTTTTATTTTGTCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTAATTTCTCTGAGGGGGAAAAGGTGAGGTTTTATTTTGTCATT  646

seq1  GTTTTTGTTTCCTTTTGTTTTTAACCATGAAACAACCAGGTCTCAAATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTCCTTTTGTTTTTAACCATGAAACAACCAGGTCTCAAATAG  696

seq1  AAATATTGACCAGGAAGGTTCATTGACTAAAAGATCCCAGGAAAGTTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGACCAGGAAGGTTCATTGACTAAAAGATCCCAGGAAAGTTCTG  746

seq1  GAAGGAACGCAGGATGTTTGTGTTTAGAGCTCACGCCCTTTGTTCTTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACGCAGGATGTTTGTGTTTAGAGCTCACGCCCTTTGTTCTTCAG  796

seq1  TAAGTGGTAGTAAAGCGTTCTGGTATGCTTTGTTTGAAAAAATTAAAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTAGTAAAGCGTTCTGGTATGCTTTGTTTGAAAAAATTAAAAAC  846

seq1  AATCTCAAGGAAGCTCTCTCAGACATGTGTCATGGCCTTAGTCTTACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGGAAGCTCTCTCAGACATGTGTCATGGCCTTAGTCTTACTGA  896

seq1  ATTC  902
      ||||
seq2  ATTC  900

seq1: chr3_150038671_150039081
seq2: B6Ng01-142N19.g_522_916 (reverse)

seq1  CCCACTCATTCCCATTTTTTTTTTTTTTTTTTTTTGGCCCTGGCGTTCCC  50
      ||||||||||||||              ||||||||||||||||||||||
seq2  CCCACTCATTCCCA--------------TTTTTTTGGCCCTGGCGTTCCC  36

seq1  CTGTACTGGGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTCTAG  100
      |||||||||||||||||||| |||| ||||||||||||||||| ||| ||
seq2  CTGTACTGGGGCATATACAG-TTGCGTGTCCAATGGGCCTCTC-TTCCAG  84

seq1  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAG  150
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATGACCGACTAGGCCATCTTTTGATACATATGCAGCTAGAATCAAGAG  134

seq1  CTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAG  200
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCCGGGGTACTGGTTAGTTCATAATGTAGTTCCACCTATAGGGTTGCAG  184

seq1  ATCCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCT  250
      |||||||||||||||||| ||||||||||||||||||||||||  |||||
seq2  ATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGAAGCCCT  234

seq1  GTGTTCCATCCTATAGATGACTGTGAGCATCTACTTCTGTGTTTGCTGGG  300
      ||| ||||||| |||| |||||||||||||| ||||||||||||||| ||
seq2  GTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  284

seq1  CCCCGGCATAGTCTCCCAAGAGACAGCAACATCTGGGTCCTCTCGATAAA  350
      ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAA  334

seq1  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGG  384

seq1  TGGATCCCTGG  411
      |||||||||||
seq2  TGGATCCCTGG  395