BAC Information

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BAC

Clone NameB6Ng01-143B16
Chromosome3 (Build37)
Map Location 19,539,155 - 19,669,509
singlet/doubletdoublet
Overlap geneTrim55, Crh, LOC665002
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
Downstream geneLOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B16.bB6Ng01-143B16.g
ACCDH941130DH941131
length1,2261,003
definitionDH941130|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B16, 5' end.DH941131|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,539,155 - 19,540,427)(19,668,487 - 19,669,509)
sequence
gaattcttataggatcatcataaataattgtcatcataaataattaagaa
ggtatctatttgactatatagcaccactacaagacagtacatcttcatag
atctactcaaaagagtggactaatacatagtgatcatcacatatgtttaa
ttatatcaggaaaagcataacaatagcaggaatctttcttaaaatgattc
tcctgggccttgcatactgtagattttaatctaaggtggttatctcagaa
agatcacctgctagttattagcttgtcctatgatggctcctgacaaaata
ctgctaagttatttatgaaccctaatcagttgtagatggcacaatctaaa
tccagttaggtgaaggtactttcctgatggtacaaggtaaggcagctgca
gaacccagagagtctgcctgctgactcactgtagcatcccctgcagcaac
agcactggtggaccatgctaggcatctgagtcatctccattgagtttact
atcataaccccagagtccctttcctactgtcctttccactgctactgccc
tgtgcaagggcttgctgacctcttatttgaactattggaagttgccaatc
ttgtctttagaaagtcccctgcattgttgtctgtccccatcacagcagga
aggtcattccaacaacacagacatgagttcatggaaacattctcaagaga
aatttttaatgactttctagtgcctggttttagtaagttttaaagaaaca
acccaatgcatcagtagggcagtcttcactgtaggccaaactactaagag
ctctgatgctccctgtacgcctgtgcctccaggtctctgcaaatgtgtct
tttcccagttgatttattccaaagctatcaaccctgaagctttcctcatt
ccttgcactcctcattagtgcttctcacatgtggttctacatgtgatgtg
ttatctctatcatatgagctcttgcagcacagctatctctatatctttca
atcccagagcattgtcataggaacatatggtagtactcagtgattttttt
ttttttagaagaatggttatttccacgaagcctgcctcatgtacactcat
gtggtccgacactcagcatgatgagcttgtatatactgatagccatgaga
gatcatcacttggaactctgttacgcactgtaatgcattatgtacgtttg
tagatgtagtcctctcagaggagtct
gaattccatgtcttaagaacaaacagaaatccgtgatattttggttaact
cagtgtatttataaaatgaaaagctctatcaaaaataaatagaacagaca
acggatctaccaaagttcatattcactttagcagatgtcagtgtgggaca
gttcattacagcacaatttgctcttattcccccagagctgaccagcttcc
aagctaactgttaaattattttactgagattttattttgttggtatctgg
ctcattccacatcatcgtcagccaagccctgagcacttacaattctctga
ctaatggttggaagtttggtcagaagcatctgcaatactggtggtggaag
agtctgctgtaacactggcggaagctgctgaggctgtccacacacagcag
tggcatttgtcaggtggtccacacccttctcgtagttaccttgtgctaat
aacccttcaccaagctgtgtctcttcaaggaagaatttctgaactgcttc
agcatcttttaaatcaggtaacttggaaagtccagctctctccttagcaa
gcttctgtttcttcgttctcgaagcctgttcttgaagttggggtcactcc
gccttttgcggtcgaagtagatgcagtacccgatgagagggcaccgcaca
ttcctacagcgatggtgcccaccatcttcacttgactggggcgtatgccg
ggccgcagcagccgcctggcagcggtcagcacgccgcgatacaagacaat
tcttacatagcatccaaccagagatgcttgaacatgccagtatccagact
gtaattagatgcctgggcatcgaaatcagcatctgaatatgcagtgcaca
aaccatctttcaacagactgtgtactcagtatatgttgtttaatgtaaca
cacaacacacacacacacacacacacacactacacacatctttctcaaac
agatctgtgacagcagatgtgtagtatcatatatagtactttttccccag
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19539155_19540427
seq2: B6Ng01-143B16.b_45_1270

seq1  GAATTCTTATAGGATCATCATAAATAATTGTCATCATAAATAATTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAGGATCATCATAAATAATTGTCATCATAAATAATTAAGAA  50

seq1  GGTATCTATTTGACTATATAGCACCACTACAAGACAGTACATCTTCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTATTTGACTATATAGCACCACTACAAGACAGTACATCTTCATAG  100

seq1  ATCTACTCAAAAGAGTGGACTAATACATAGTGATCATCACATATGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCAAAAGAGTGGACTAATACATAGTGATCATCACATATGTTTAA  150

seq1  TTATATCAGGAAAAGCATAACAATAGCAGGAATCTTTCTTAAAATGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAGGAAAAGCATAACAATAGCAGGAATCTTTCTTAAAATGATTC  200

seq1  TCCTGGGCCTTGCATACTGTAGATTTTAATCTAAGGTGGTTATCTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCCTTGCATACTGTAGATTTTAATCTAAGGTGGTTATCTCAGAA  250

seq1  AGATCACCTGCTAGTTATTAGCTTGTCCTATGATGGCTCCTGACAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCTGCTAGTTATTAGCTTGTCCTATGATGGCTCCTGACAAAATA  300

seq1  CTGCTAAGTTATTTATGAACCCTAATCAGTTGTAGATGGCACAATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGTTATTTATGAACCCTAATCAGTTGTAGATGGCACAATCTAAA  350

seq1  TCCAGTTAGGTGAAGGTACTTTCCTGATGGTACAAGGTAAGGCAGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAGGTGAAGGTACTTTCCTGATGGTACAAGGTAAGGCAGCTGCA  400

seq1  GAACCCAGAGAGTCTGCCTGCTGACTCACTGTAGCATCCCCTGCAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGAGAGTCTGCCTGCTGACTCACTGTAGCATCCCCTGCAGCAAC  450

seq1  AGCACTGGTGGACCATGCTAGGCATCTGAGTCATCTCCATTGAGTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTGGACCATGCTAGGCATCTGAGTCATCTCCATTGAGTTTACT  500

seq1  ATCATAACCCCAGAGTCCCTTTCCTACTGTCCTTTCCACTGCTACTGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACCCCAGAGTCCCTTTCCTACTGTCCTTTCCACTGCTACTGCCC  550

seq1  TGTGCAAGGGCTTGCTGACCTCTTATTTGAACTATTGGAAGTTGCCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGGGCTTGCTGACCTCTTATTTGAACTATTGGAAGTTGCCAATC  600

seq1  TTGTCTTTAGAAAGTCCCCTGCATTGTTGTCTGTCCCCATCACAGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAGAAAGTCCCCTGCATTGTTGTCTGTCCCCATCACAGCAGGA  650

seq1  AGGTCATTCCAACAACACAGACATGAGTTCATGGAAACATTCTCAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTCCAACAACACAGACATGAGTTCATGGAAACATTCTCAAGAGA  700

seq1  AATTTTTAATGACTTTCTAGTGCCTGGTTTTAGTAAGTTTTAAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAATGACTTTCTAGTGCCTGGTTTTAGTAAGTTTTAAAGAAACA  750

seq1  ACCCAATGCATCAGTAGGGCAGTCTTCACTGTAGGCCAAACTACTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATGCATCAGTAGGGCAGTCTTCACTGTAGGCCAAACTACTAAGAG  800

seq1  CTCTGATGCTCCCTGTACGCCTGTGCCTCCAGGTCTCTGCAAATGTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCTCCCTGTACGCCTGTGCCTCCAGGTCTCTGCAAATGTGTCT  850

seq1  TTTCCCAGTTGATTTATTCCAAAGCTATCAAACCCTGAAGCTTTCCTCAT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCCCAGTTGATTTATTCCAAAGCTATC-AACCCTGAAGCTTTCCTCAT  899

seq1  TCCTTGCACTCCTCATTAGTGCCTTCTCACCATGTGGTTCCTACATGTGA  950
      ||||||||||||||||||||| ||||||| ||||||||| ||||||||| 
seq2  TCCTTGCACTCCTCATTAGTG-CTTCTCA-CATGTGGTT-CTACATGTG-  945

seq1  ATGTGTTATCTCTATCATATTGAGCTCCTTGCAGGCAACAGCCTAATCTC  1000
      ||||||||||||||||||| |||||| |||||||   |||||   |||||
seq2  ATGTGTTATCTCTATCATA-TGAGCT-CTTGCAG--CACAGC--TATCTC  989

seq1  TATAATCTTTCAATTCCCAGAGCATTGTTCAATAGGAACATATGGTAAGT  1050
      ||| ||||||||| ||||||||||||||   ||||||||||||||| |||
seq2  TAT-ATCTTTCAA-TCCCAGAGCATTGT--CATAGGAACATATGGT-AGT  1034

seq1  ACTCAGTGAATTTTTTTTTTTTTTAGAAGGAATGGGTTATTTCCACGAAA  1100
      |||||||||  ||||||||||||||||| |||| ||||||||||||||| 
seq2  ACTCAGTGA--TTTTTTTTTTTTTAGAA-GAAT-GGTTATTTCCACGAA-  1079

seq1  GGCCCTGCCTCAGTGTACAACTCATGTGCCGCACAACTTTCAGCCATTGA  1150
         ||||||||| ||||| |||||||||  |  | ||  |||||   |||
seq2  --GCCTGCCTCA-TGTAC-ACTCATGTG--GTCCGACACTCAGC--ATGA  1121

seq1  TGGAGCTTTGGTATATATACTGATAGCCCCATGAGATTACATCACTTGGT  1200
      | |||||    | |||||||||||||  ||||||||   |||||||||| 
seq2  T-GAGCT----TGTATATACTGATAG--CCATGAGAGATCATCACTTGG-  1163

seq1  GACTTCTCTGGTTATAACGACACTGATAGTGCATTATGGACATGTTTGTA  1250
           |||||    | ||| ||||| || ||||||||| ||  |||||||
seq2  ---AACTCTG----TTACG-CACTG-TAATGCATTATGTAC--GTTTGTA  1202

seq1  GTGATGCTCCT-AGAGAGGAGTCT  1273
      |   |  ||||   ||||||||||
seq2  GATGTAGTCCTCTCAGAGGAGTCT  1226

seq1: chr3_19668487_19669509
seq2: B6Ng01-143B16.g_70_1072 (reverse)

seq1  AATCTGGGGGGAAAAAAGTACTATATATGATAACTAACACAATCTGGCTG  50
      |||||||||   ||||||||||||||||||| ||| |||| |||| ||||
seq2  AATCTGGGG---AAAAAGTACTATATATGAT-ACT-ACAC-ATCT-GCTG  43

seq1  GTCCACAAGATCTGTTTGAGAAAGAATGTGTGTGTGTGTGTGTGTGTGTG  100
         ||| ||||||||||||||||| ||||||||  |||||||||||||||
seq2  --TCAC-AGATCTGTTTGAGAAAG-ATGTGTGT-AGTGTGTGTGTGTGTG  88

seq1  TGTGTGTGTGTGTGTGTGTTTACAATTAAAAACAACATATTAACTGAGTA  150
      ||||||||||| |||||| ||||| |   |||||||||||  ||||||||
seq2  TGTGTGTGTGT-TGTGTG-TTACATT---AAACAACATAT--ACTGAGTA  131

seq1  CACAGTTCTGTTGGAAGATGGTTTGTGCACTGCATATTCAGATGCTGATT  200
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACAG-TCTGTTGAAAGATGGTTTGTGCACTGCATATTCAGATGCTGATT  180

seq1  TCGATGCCCAGGCATCTAATTACAGTCTGGATACTGGCATGTTCAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGCCCAGGCATCTAATTACAGTCTGGATACTGGCATGTTCAAGCAT  230

seq1  CTCTGGTTGGATGCTATGTAAGAATTGTCTTGTATCGCGGCGTGCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTGGATGCTATGTAAGAATTGTCTTGTATCGCGGCGTGCTGACC  280

seq1  GCTGCCAGGCGGCTGCTGCGGCCCGGCATACGCCCCAGTCAAGTGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGCGGCTGCTGCGGCCCGGCATACGCCCCAGTCAAGTGAAGAT  330

seq1  GGTGGGCACCATCGCTGTAGGAATGTGCGGTGCCCTCTCATCGGGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCACCATCGCTGTAGGAATGTGCGGTGCCCTCTCATCGGGTACTG  380

seq1  CATCTACTTCGACCGCAAAAGGCGGAGTGACCCCAACTTCAAGAACAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTTCGACCGCAAAAGGCGGAGTGACCCCAACTTCAAGAACAGGC  430

seq1  TTCGAGAACGAAGAAACAGAAGCTTGCTAAGGAGAGAGCTGGACTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGAACGAAGAAACAGAAGCTTGCTAAGGAGAGAGCTGGACTTTCCA  480

seq1  AGTTACCTGATTTAAAAGATGCTGAAGCAGTTCAGAAATTCTTCCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTGATTTAAAAGATGCTGAAGCAGTTCAGAAATTCTTCCTTGAA  530

seq1  GAGACACAGCTTGGTGAAGGGTTATTAGCACAAGGTAACTACGAGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGCTTGGTGAAGGGTTATTAGCACAAGGTAACTACGAGAAGGG  580

seq1  TGTGGACCACCTGACAAATGCCACTGCTGTGTGTGGACAGCCTCAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCACCTGACAAATGCCACTGCTGTGTGTGGACAGCCTCAGCAGC  630

seq1  TTCCGCCAGTGTTACAGCAGACTCTTCCACCACCAGTATTGCAGATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCCAGTGTTACAGCAGACTCTTCCACCACCAGTATTGCAGATGCTT  680

seq1  CTGACCAAACTTCCAACCATTAGTCAGAGAATTGTAAGTGCTCAGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAAACTTCCAACCATTAGTCAGAGAATTGTAAGTGCTCAGGGCTT  730

seq1  GGCTGACGATGATGTGGAATGAGCCAGATACCAACAAAATAAAATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACGATGATGTGGAATGAGCCAGATACCAACAAAATAAAATCTCAG  780

seq1  TAAAATAATTTAACAGTTAGCTTGGAAGCTGGTCAGCTCTGGGGGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTAACAGTTAGCTTGGAAGCTGGTCAGCTCTGGGGGAATAA  830

seq1  GAGCAAATTGTGCTGTAATGAACTGTCCCACACTGACATCTGCTAAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATTGTGCTGTAATGAACTGTCCCACACTGACATCTGCTAAAGTG  880

seq1  AATATGAACTTTGGTAGATCCGTTGTCTGTTCTATTTATTTTTGATAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACTTTGGTAGATCCGTTGTCTGTTCTATTTATTTTTGATAGAG  930

seq1  CTTTTCATTTTATAAATACACTGAGTTAACCAAAATATCACGGATTTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTTATAAATACACTGAGTTAACCAAAATATCACGGATTTCTG  980

seq1  TTTGTTCTTAAGACATGGAATTC  1023
      |||||||||||||||||||||||
seq2  TTTGTTCTTAAGACATGGAATTC  1003