BAC Information

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BAC

Clone NameB6Ng01-144A14
Chromosome3 (Build37)
Map Location 103,898,459 - 104,029,900
singlet/doubletdoublet
Overlap geneMagi3
Upstream geneAmpd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1
Downstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A14.bB6Ng01-144A14.g
ACCDH941818DH941819
length363957
definitionDH941818|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A14, 5' end.DH941819|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,029,532 - 104,029,900)(103,898,459 - 103,899,415)
sequence
acgtggtcatttgcaggtaaatgtacctatgtgtaaaaaagatgtgctta
tgtgtggaacataatactgattttaactgataaatttgtttaaggatatg
agataatcaacatttccatgttatcaaacttgtctctgaacacatttgaa
cattattatcatgtagatgacaaataaaatgctaatcaaatactgaagat
acaatacgacactatactgggttaggctagtgatggtggactacattgca
aatatcacgccaaataatggtacatgtggtatgtgtgtttatatatatgt
ttgtgtatgtgtgcatatgtgtatatatgtacatgtgtatgtgtttatat
gtatgtatgtatg
gaattccctaatcaaaagaaaatcacattttcaaataatgtcttaagact
tattctattttatttttacttttttattttttatttttgtttgtttttcg
agacaggatttctctgtgtagccctagctgtcctggaactcactctgtag
accaggctggcttcagactcagaaatctgcctgcctctgcctctcaagtg
ctggcattaaaggcatgagccaccactgcctggcaactttattttatgca
tacagttattttgcctcatgtatatttgtgtaccatatgtgtgcagtgcc
cacagaggtctgaagagggcactggatcccgtgtaattgaagtttaacag
ctgctaaacatcagaaatcagaagcaagtcttttggaggaaggatcagcc
agtgttcttaaatgttaatccatccccctagtccttccaaataacttttt
aaaaattgaatttactgatgaaattccctctgaaatgattctggttatct
ggaggtagttttcatatttggggacataccatcatacgttccactttcta
acaatgctccgctttcttccagtgccttgaattgttcaacagaaatgaag
ttataatccacccctgggacttccccatccctgggagcccttgtagtgcc
taaggagagaagaaaaaaaaatacttgtaaaatactttttaaaatacaag
tactcagaatgctataaagttcagtctaagaagactacaaggaagacaag
ttatttaatacattgtatctgatgtattaaagtatcataataactatagg
agaaatacacttgaataaaatagtaataaaatccatatctataaaaactc
tacagtaagtttagtactactaaggacttaatttcctggcatacagtttt
tttttttaaaagattttattttaaaacttttaattgtgtgtgtgtgtgtg
tgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104029532_104029900
seq2: B6Ng01-144A14.b_50_418 (reverse)

seq1  CATACATACATACATATAAACACATACACATGTACATATATACACATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATATAAACACATACACATGTACATATATACACATATG  50

seq1  CACACATACACAAACATATATATAAACACACATACCACATGTACCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACAAACATATATATAAACACACATACCACATGTACCATTAT  100

seq1  TTGGCGTGATATTTGCAATGTAGTCCACCATCACTAGCCTAACCCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTGATATTTGCAATGTAGTCCACCATCACTAGCCTAACCCAGTAT  150

seq1  AGTGTCGTATTGTATCTTCAGTATTTGATTAGCATTTTATTTGTCATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGTATTGTATCTTCAGTATTTGATTAGCATTTTATTTGTCATCTA  200

seq1  CATGATAATAATGTTCAAATGTGTTCAGAGACAAGTTTGATAACATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATAATGTTCAAATGTGTTCAGAGACAAGTTTGATAACATGGAA  250

seq1  ATGTTGATTATCTCATATCCTTAAACAAATTTATCAGTTAAAATCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATTATCTCATATCCTTAAACAAATTTATCAGTTAAAATCAGTAT  300

seq1  TATGTTCCACACATAAGCACATCTTTTTTACACATAGGTACATTTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCACACATAAGCACATCTTTTTTACACATAGGTACATTTACCTG  350

seq1  CAAATGACCACGTGAATTC  369
      |||||||||||||||||||
seq2  CAAATGACCACGTGAATTC  369

seq1: chr3_103898459_103899415
seq2: B6Ng01-144A14.g_67_1023

seq1  GAATTCCCTAATCAAAAGAAAATCACATTTTCAAATAATGTCTTAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATCAAAAGAAAATCACATTTTCAAATAATGTCTTAAGACT  50

seq1  TATTCTATTTTATTTTTACTTTTTTATTTTTTATTTTTGTTTGTTTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTTTATTTTTACTTTTTTATTTTTTATTTTTGTTTGTTTTTCG  100

seq1  AGACAGGATTTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTCTGTAG  150

seq1  ACCAGGCTGGCTTCAGACTCAGAAATCTGCCTGCCTCTGCCTCTCAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCTTCAGACTCAGAAATCTGCCTGCCTCTGCCTCTCAAGTG  200

seq1  CTGGCATTAAAGGCATGAGCCACCACTGCCTGGCAACTTTATTTTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTAAAGGCATGAGCCACCACTGCCTGGCAACTTTATTTTATGCA  250

seq1  TACAGTTATTTTGCCTCATGTATATTTGTGTACCATATGTGTGCAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTATTTTGCCTCATGTATATTTGTGTACCATATGTGTGCAGTGCC  300

seq1  CACAGAGGTCTGAAGAGGGCACTGGATCCCGTGTAATTGAAGTTTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTCTGAAGAGGGCACTGGATCCCGTGTAATTGAAGTTTAACAG  350

seq1  CTGCTAAACATCAGAAATCAGAAGCAAGTCTTTTGGAGGAAGGATCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAACATCAGAAATCAGAAGCAAGTCTTTTGGAGGAAGGATCAGCC  400

seq1  AGTGTTCTTAAATGTTAATCCATCCCCCTAGTCCTTCCAAATAACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTAAATGTTAATCCATCCCCCTAGTCCTTCCAAATAACTTTTT  450

seq1  AAAAATTGAATTTACTGATGAAATTCCCTCTGAAATGATTCTGGTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAATTTACTGATGAAATTCCCTCTGAAATGATTCTGGTTATCT  500

seq1  GGAGGTAGTTTTCATATTTGGGGACATACCATCATACGTTCCACTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTTTTCATATTTGGGGACATACCATCATACGTTCCACTTTCTA  550

seq1  ACAATGCTCCGCTTTCTTCCAGTGCCTTGAATTGTTCAACAGAAATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTCCGCTTTCTTCCAGTGCCTTGAATTGTTCAACAGAAATGAAG  600

seq1  TTATAATCCACCCCTGGGACTTCCCCATCCCTGGGAGCCCTTGTAGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCCACCCCTGGGACTTCCCCATCCCTGGGAGCCCTTGTAGTGCC  650

seq1  TAAGGAGAGAAGAAAAAAAAATACTTGTAAAATACTTTTTAAAATACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAGAAGAAAAAAAAATACTTGTAAAATACTTTTTAAAATACAAG  700

seq1  TACTCAGAATGCTATAAAGTTCAGTCTAAGAAGACTACAAGGAAGACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAATGCTATAAAGTTCAGTCTAAGAAGACTACAAGGAAGACAAG  750

seq1  TTATTTAATACATTGTATCTGATGTATTAAAGTATCATAATAACTATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATACATTGTATCTGATGTATTAAAGTATCATAATAACTATAGG  800

seq1  AGAAATACACTTGAATAAAATAGTAATAAAATCCATATCTATAAAAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACACTTGAATAAAATAGTAATAAAATCCATATCTATAAAAACTC  850

seq1  TACAGTAAGTTTAGTACTACTAAGGACTTAATTTCCTGGCATACAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAGTTTAGTACTACTAAGGACTTAATTTCCTGGCATACAGTTTT  900

seq1  TTTTTTTAAAAGATTTTATTTTAAAACTTTTAATTGTGTGTGTGTGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAGATTTTATTTTAAAACTTTTAATTGTGTGTGTGTGTGTG  950

seq1  TGTGTGT  957
      |||||||
seq2  TGTGTGT  957