BAC Information

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BAC

Clone NameB6Ng01-144B03
Chromosome1 (Build37)3 (Build37)
Map Location 175,887,151 - 175,887,32214,644,252 - 14,645,344
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203
Downstream geneIfi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B03.bB6Ng01-144B03.g
ACCDH941842DH941843
length8531,083
definitionDH941842|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B03, 5' end.DH941843|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(175,887,151 - 175,887,322)(14,644,252 - 14,645,344)
sequence
gaattcctgatctttccaagagttttaccatgaatgggtattgaattttg
tcaaatgctttctcagcatctactgagatgatcatgttttctcccctccc
ctttgaatttgtttatgtagtggattatgttgatggatttctgtatattg
atccatccctgcatccctgggatgaagactacttgatcatggtgaatgat
tgttttgatgaattcttggattctgattctgagaattttattgagtattt
gtgcattgatattcataagggaaattggtctgaagttctctttctttgtt
agttttggtatcagtgcaactgtggcttcgtagagcaaattgggtactgt
accttatagtttgaagagtattcctattaggtcttttttgacggtctgat
agaattctgcactaaactcatctggtcctgggatttttttggttgggaga
ctttaatgactgcttctatttcgttaggggttatgggactgtttagatca
cttatctgatcctgatttaactttggtacctagtatctatctagaaaatt
gtccatttcctacagattttccagttttgttgaagataggcttttgtagt
aggatctaatggatattctcggtttctgttgttatgtctcccttttcatt
tctgattttgttaatttggtttcagtctctgtgccctcctgttagtctag
ctaagggattatttatcttgttgattttctcaaagaaccagttcctggtt
ttactgattctctgtatagttctttttgtttctacttggttgatttcagc
cctgggtttgcttattttctgctgtctactcctcttgggtgtatttgctt
cgt
gaattcacatgataaatatgcttcaattttgaaatttacagagtgaaaaa
caggagagtaaatctaaccatccaacgtcttacaacaactaataaacaaa
cagagccaacctgatttgtcctccgtgtcgtcaaagtcaacgttgaagga
atggccactattgctgatgattttagctgaggcaggatcatacttgatac
tgagaggtcggagtgaggagtcgtatttcacttctttggttttaatctca
attggagactgctgatcaccatcagcaatagggaacaattcattccagtg
aatgggacctgaaattgagaagaccaaaaggagaggactaagtaagttct
tcattcagcaaattaaaactggtagcagcaggctggggactccacttcat
ggataaaggaagtgcagcacaaatgtgaaggtgagagtttggatcctcat
tatccataggaatgccaggtgggtgtggcagctcacttgaagtccagcat
ttaggaggagacttaaggagttccacattagctggctagttacactaagt
ctgactctctgaactccaggctcagagagaaacaattaagaaggtgatag
agaacagaggggaagacaaccaaggtccatctggcttctgcacacaataa
aacatccatacccacagccacatcatccacatcatggggaaaaattaaaa
attagtaaaagtatgatcctcaggactctgctcctattttaaccatgact
agtgttttgtggttatggaaagcactgtgtttgctttaaattgttatcag
aattaaagatgtacattataggtgaaagaataattacatttcatacagtg
cttctcaaagttacctacctaccaaacaagaacagaagtacaattcattg
ttgcaaacaaagaaattccatctcaaaaccagaatgttccttggctgctc
agaggccaagagtttagcagaggagagcagacactgcctgctatttctgc
tagtagtatagcactgacggatagcttctaatgcctctgctcagctcagc
taacctgaggtacttgttatagcactcatctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175887151_175887322
seq2: B6Ng01-144B03.b_43_218 (reverse)

seq1  TTCATCCCAGGGATGCAGGGATGGTTCAATATACGGAAATCCATCAACGT  50
      |||||||||||||||||||||||| ||||||||| ||||||||||||| |
seq2  TTCATCCCAGGGATGCAGGGATGGATCAATATACAGAAATCCATCAACAT  50

seq1  AACCCAGTATATAAACAAACTCAAAGACAA----AAACCACATGATCATC  96
      || ||| || ||||||||| ||||||   |    | |  |||||||||||
seq2  AATCCACTACATAAACAAATTCAAAGGGGAGGGGAGAAAACATGATCATC  100

seq1  TCATTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCATGAT  146
      ||| |||||||||||||||||||||||||||| ||| ||||||||||| |
seq2  TCAGTAGATGCTGAGAAAGCATTTGACAAAATTCAATACCCATTCATGGT  150

seq1  AAAAGTCTTGGAAAGATCAGGAATTC  172
      |||| |||||||||||||||||||||
seq2  AAAACTCTTGGAAAGATCAGGAATTC  176

seq1: chr3_14644252_14645344
seq2: B6Ng01-144B03.g_64_1146 (reverse)

seq1  GTAGATGAGTTGCATATAACAGGTACCTCAGGTTAGCTGAGCTGAGCAGA  50
      ||||||||| ||| ||||||| ||||||||||||||||||||||||||||
seq2  GTAGATGAG-TGC-TATAACAAGTACCTCAGGTTAGCTGAGCTGAGCAGA  48

seq1  GGGGCATTAGAGGCTATCCGTCAGTGCTATAACTACTAGCAGAAATAGCA  100
        ||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  --GGCATTAGAAGCTATCCGTCAGTGCTAT-ACTACTAGCAGAAATAGCA  95

seq1  GGCAGTGTCTGCTCTTCCTCTGCTTAAACTTCTTGGCCTCTGGAGCAGCC  150
      |||||||||||||| |||||||| ||||| ||||||||||| ||||||||
seq2  GGCAGTGTCTGCTC-TCCTCTGC-TAAAC-TCTTGGCCTCT-GAGCAGCC  141

seq1  AAGGAACATTCTTGGTTTTGAGATGGAATTTCTTTGTTTGCAACAATGAA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATTC-TGGTTTTGAGATGGAATTTCTTTGTTTGCAACAATGAA  190

seq1  TTGTACTTCTGTTCTTGTTTGGTAGGTAGGTAACTTTGAGAAGCACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTCTGTTCTTGTTTGGTAGGTAGGTAACTTTGAGAAGCACTGTA  240

seq1  TGAAATGTAATTATTCTTTCACCTATAATGTACATCTTTAATTCTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAATTATTCTTTCACCTATAATGTACATCTTTAATTCTGATAA  290

seq1  CAATTTAAAGCAAACACAGTGCTTTCCATAACCACAAAACACTAGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAGCAAACACAGTGCTTTCCATAACCACAAAACACTAGTCATG  340

seq1  GTTAAAATAGGAGCAGAGTCCTGAGGATCATACTTTTACTAATTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATAGGAGCAGAGTCCTGAGGATCATACTTTTACTAATTTTTAAT  390

seq1  TTTTCCCCATGATGTGGATGATGTGGCTGTGGGTATGGATGTTTTATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCATGATGTGGATGATGTGGCTGTGGGTATGGATGTTTTATTGT  440

seq1  GTGCAGAAGCCAGATGGACCTTGGTTGTCTTCCCCTCTGTTCTCTATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAGCCAGATGGACCTTGGTTGTCTTCCCCTCTGTTCTCTATCAC  490

seq1  CTTCTTAATTGTTTCTCTCTGAGCCTGGAGTTCAGAGAGTCAGACTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAATTGTTTCTCTCTGAGCCTGGAGTTCAGAGAGTCAGACTTAGT  540

seq1  GTAACTAGCCAGCTAATGTGGAACTCCTTAAGTCTCCTCCTAAATGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGCCAGCTAATGTGGAACTCCTTAAGTCTCCTCCTAAATGCTGG  590

seq1  ACTTCAAGTGAGCTGCCACACCCACCTGGCATTCCTATGGATAATGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGTGAGCTGCCACACCCACCTGGCATTCCTATGGATAATGAGGA  640

seq1  TCCAAACTCTCACCTTCACATTTGTGCTGCACTTCCTTTATCCATGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCTCACCTTCACATTTGTGCTGCACTTCCTTTATCCATGAAGT  690

seq1  GGAGTCCCCAGCCTGCTGCTACCAGTTTTAATTTGCTGAATGAAGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCAGCCTGCTGCTACCAGTTTTAATTTGCTGAATGAAGAACTT  740

seq1  ACTTAGTCCTCTCCTTTTGGTCTTCTCAATTTCAGGTCCCATTCACTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCCTCTCCTTTTGGTCTTCTCAATTTCAGGTCCCATTCACTGGA  790

seq1  ATGAATTGTTCCCTATTGCTGATGGTGATCAGCAGTCTCCAATTGAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTTCCCTATTGCTGATGGTGATCAGCAGTCTCCAATTGAGATT  840

seq1  AAAACCAAAGAAGTGAAATACGACTCCTCACTCCGACCTCTCAGTATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAGAAGTGAAATACGACTCCTCACTCCGACCTCTCAGTATCAA  890

seq1  GTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCA  940

seq1  ACGTTGACTTTGACGACACGGAGGACAAATCAGGTTGGCTCTGTTTGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGACTTTGACGACACGGAGGACAAATCAGGTTGGCTCTGTTTGTTT  990

seq1  ATTAGTTGTTGTAAGACGTTGGATGGTTAGATTTACTCTCCTGTTTTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGTTGTAAGACGTTGGATGGTTAGATTTACTCTCCTGTTTTTCA  1040

seq1  CTCTGTAAATTTCAAAATTGAAGCATATTTATCATGTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAATTTCAAAATTGAAGCATATTTATCATGTGAATTC  1083