BAC Information

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BAC

Clone NameB6Ng01-146H20
Chromosome3 (Build37)
Map Location 53,302,533 - 53,438,186
singlet/doubletdoublet
Overlap geneStoml3, Frem2
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146H20.bB6Ng01-146H20.g
ACCDH943621DH943622
length983979
definitionDH943621|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H20, 5' end.DH943622|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,302,533 - 53,303,518)(53,437,208 - 53,438,186)
sequence
gaattctcccaaaagatttctctgctgagtcccaggataacaaacccccg
tcacgcatgtccctggggctaatgggttgcctcagaacgtcacgagggcc
agagggaaacaagccaaattgctagcacttctgcagatagcaaattatcc
tctagtcataaaagtgttcatgagaaaagcagccatatccagcactcatg
gatgccgggcagggtcctaggcatggcgttggggttggctgacatggaac
tcaaggtagttctcaagaacctggggttaaccatcacacacacacacaca
gacacacacacagacacacacacagacacacacacagacacacacacaca
cacacacacacatacacagagacacacacacacacagacacacacacaca
cagacacacacgcacacacacagacacacacacacagacacacacacaca
cacagagacacacacacacacacacatacacagagacacagagacacaca
cacacagacagacacacacacacagacacacacgcacacacacagacaca
cacacacacacagagacacacacacaggggcggggggaggtgaggggctt
aggatggggatttctttactagaggactcaggaagcttctgagaacaaac
caaagcttgaaatgctatgtaattaacaaccaaacccggcattctcagtc
cctcctgctggctcctcacacagactaaaagctgattttctgccttgaaa
caaatacaatacaaagatttctggagttggggatttagctcagtggtaga
gcgcttgcctagcaagtacaaagccctggttgcggtcctcagctctgaaa
caagcaagcgaacatacaaagattgcttgattgatggtaacggctctgta
tcccttacctgctgatgggcttttggctgggatcctagaatgactcaatt
ctgaggggtagagctggatactctagtatgctc
gaattccagcagttggaaaatgggggcaaaggaatctctgagtttgaggc
cagcttgatctgcatagtgagttccgggataggcagtgctacaaagtaag
atcacatctcaaaagaagacatagggagaaaaggatagctttcccacaag
tttgagttctaaacgcataacctcttgctagttcattgtagaggaaggaa
ggagttgagatgcgggaataattcggggcttcacggcccatggagaagga
cagtagtgcagggagggactggagggcctgataccgagatggggatgaag
cccaggcgatttgacttactctgagaagtcttgactctttttttaagtgt
gggttcaggaaagctagcctttcattctacccctttgctctatctcactg
ccaaagtgggagctgtgacaaatgctgccacgaacctctgcatcactgga
gacctgactcggagccaagcatcttaacttggctggtctcagttgcagtt
gtaaagggggaagtgggaggctagaatagcgagccgctagcgggattctt
ttgaagactgcgtagaaaaatgcgctgaaagtttgccattcatacatctc
agttcccaggatgctgttgtctagctgtggtcccttcccagaggacttag
gggcttctgccttctttctctccttcctctcttccccactaccttctccc
ctctcttggtagttatggttttgtttgttgagaaaggtcttattaaggag
cctcccagtggacataaactcctggtcctagctgcctcagcctccttagt
gctggcgagtgtggccacccagaatgtcgctttatttcttaagctctcta
cgtgtgtctctgcttctggcttacgtgtttcctctcttttggcttctcct
tctgcttttccaatggcaacagcctgtacggttgactgaaaggctttgac
tgacaggcagaggatcttgcagacatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53302533_53303518
seq2: B6Ng01-146H20.b_46_1028

seq1  GAATTCTCCCAAAAGATTTCTCTGCTGAGTCCCAGGATAACAAACCCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAAAAGATTTCTCTGCTGAGTCCCAGGATAACAAACCCCCG  50

seq1  TCACGCATGTCCCTGGGGCTAATGGGTTGCCTCAGAACGTCACGAGGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCATGTCCCTGGGGCTAATGGGTTGCCTCAGAACGTCACGAGGGCC  100

seq1  AGAGGGAAACAAGCCAAATTGCTAGCACTTCTGCAGATAGCAAATTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAACAAGCCAAATTGCTAGCACTTCTGCAGATAGCAAATTATCC  150

seq1  TCTAGTCATAAAAGTGTTCATGAGAAAAGCAGCCATATCCAGCACTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCATAAAAGTGTTCATGAGAAAAGCAGCCATATCCAGCACTCATG  200

seq1  GATGCCGGGCAGGGTCCTAGGCATGGCGTTGGGGTTGGCTGACATGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCGGGCAGGGTCCTAGGCATGGCGTTGGGGTTGGCTGACATGGAAC  250

seq1  TCAAGGTAGTTCTCAAGAACCTGGGGTTAACCATCACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAGTTCTCAAGAACCTGGGGTTAACCATCACACACACACACACA  300

seq1  GACACACACACAGACACACACACAGACACACACACAGACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACACAGACACACACACAGACACACACACAGACACACACACACA  350

seq1  CACACACACACATACACAGAGACACACACACACACAGACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACAGAGACACACACACACACAGACACACACACACA  400

seq1  CAGACACACACGCACACACACAGACACACACACACAGACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACGCACACACACAGACACACACACACAGACACACACACACA  450

seq1  CACAGAGACACACACACACACACACATACACAGAGACACAGAGACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACACACACACACACACACATACACAGAGACACAGAGACACACA  500

seq1  CACACAGACAGACACACACACACAGACACACACGCACACACACAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACAGACACACACACACAGACACACACGCACACACACAGACACA  550

seq1  CACACACACACAGAGACACACACACAGGGGCGGGGGGAGGTGAGGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGACACACACACAGGGGCGGGGGGAGGTGAGGGGCTT  600

seq1  AGGATGGGGATT--CTTACTAGAGGACTCAGGAAGCTTCGGAGAACAAAC  648
      ||||||||||||   |||||||||||||||||||||||| ||||||||||
seq2  AGGATGGGGATTTCTTTACTAGAGGACTCAGGAAGCTTCTGAGAACAAAC  650

seq1  CAAAGCTTGAAATGCTATG-AATTAACAACCAAACCCGGCATTCTCAGTC  697
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAAAGCTTGAAATGCTATGTAATTAACAACCAAACCCGGCATTCTCAGTC  700

seq1  CCTCCTGCTGGCTCCTCACACAGACTAAAAGCTGA-TTTCTGCCTTGAAA  746
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  CCTCCTGCTGGCTCCTCACACAGACTAAAAGCTGATTTTCTGCCTTG-AA  749

seq1  ACAAATACAATAACAAAGATTTTCTGGAGTTGGGGATTTAGCTCAGTGGT  796
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  ACAAATACAAT-ACAAAGA-TTTCTGGAGTTGGGGATTTAGCTCAGTGGT  797

seq1  AGAGCGCTTGCCTAGCAAGTACAAGGCCCTGGGTGCGGTCCTCAGCTCTG  846
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AGAGCGCTTGCCTAGCAAGTACAAAGCCCTGGTTGCGGTCCTCAGCTCTG  847

seq1  AAACAAGCAAGCGAACAAACAAAGATTTCCTGATTGATGGTAACGGCTCT  896
      ||||||||||||||||| ||||||||| | ||||||||||||||||||||
seq2  AAACAAGCAAGCGAACATACAAAGATTGCTTGATTGATGGTAACGGCTCT  897

seq1  GTAT-CCTTACCTTGCTGATGTGCCTTTTGGCTGTGATCCTTAGAAAGAA  945
      |||| ||||||| |||||||| | |||||||||| ||||| ||||| | |
seq2  GTATCCCTTACC-TGCTGATG-GGCTTTTGGCTGGGATCC-TAGAATG-A  943

seq1  CACAAATCTGTGGGGTAGAGCTGGAGACCTCTAGTATGCTC  986
      | ||| |||| |||||||||||||| | |||||||||||||
seq2  CTCAATTCTGAGGGGTAGAGCTGGATA-CTCTAGTATGCTC  983

seq1: chr3_53437208_53438186
seq2: B6Ng01-146H20.g_66_1044 (reverse)

seq1  GTCATGTCTGC-AGATCCTCTGCCTGTCAGTCAAAGCCTGTCAGTCAAAC  49
      ||||||||||| ||||||||||||||||||||||||||| |||||| |||
seq2  GTCATGTCTGCAAGATCCTCTGCCTGTCAGTCAAAGCCTTTCAGTC-AAC  49

seq1  TGTACAGACTGTTGCCATGGGAAAGGCAG-AGGGGAAGCCAAAAGAGAAG  98
       |||||| |||||||||| ||||| |||| ||| ||||||||||||| ||
seq2  CGTACAGGCTGTTGCCATTGGAAAAGCAGAAGGAGAAGCCAAAAGAG-AG  98

seq1  GAAACACGGAAAGCCCAGAAGCAGAGACACACGTAG-GAGCTTAAGGAAT  147
      |||||||| ||   |||||||||||||||||||||| ||||||||| |||
seq2  GAAACACGTAA--GCCAGAAGCAGAGACACACGTAGAGAGCTTAAGAAAT  146

seq1  AAAGGCGACATTCTGGGTGGCCACACTCGCCAGCACTAGGGAGGCTGAGG  197
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAA-GCGACATTCTGGGTGGCCACACTCGCCAGCACTAAGGAGGCTGAGG  195

seq1  CAGCT-GGACCAGGAGTTTATGTCCACT-GGAGGCTCCTTAATAAGACCT  245
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGCTAGGACCAGGAGTTTATGTCCACTGGGAGGCTCCTTAATAAGACCT  245

seq1  TTCTCAACAAACAAAACCATAACTACCAAGAGAGGGGAGAAGGTAGTGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACAAACAAAACCATAACTACCAAGAGAGGGGAGAAGGTAGTGGG  295

seq1  GAAGAGAGGAAGGAGAGAAAGAAGGCAGAAGCCCCTAAGTCCTCTGGGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGAAGGAGAGAAAGAAGGCAGAAGCCCCTAAGTCCTCTGGGAA  345

seq1  GGGACCACAGCTAGACAACAGCATCCTGGGAACTGAGATGTATGAATGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACAGCTAGACAACAGCATCCTGGGAACTGAGATGTATGAATGGC  395

seq1  AAACTTTCAGCGCATTTTTCTACGCAGTCTTCAAAAGAATCCCGCTAGCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAGCGCATTTTTCTACGCAGTCTTCAAAAGAATCCCGCTAGCG  445

seq1  GCTCGCTATTCTAGCCTCCCACTTCCCCCTTTACAACTGCAACTGAGACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTATTCTAGCCTCCCACTTCCCCCTTTACAACTGCAACTGAGACC  495

seq1  AGCCAAGTTAAGATGCTTGGCTCCGAGTCAGGTCTCCAGTGATGCAGAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTTAAGATGCTTGGCTCCGAGTCAGGTCTCCAGTGATGCAGAGG  545

seq1  TTCGTGGCAGCATTTGTCACAGCTCCCACTTTGGCAGTGAGATAGAGCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGGCAGCATTTGTCACAGCTCCCACTTTGGCAGTGAGATAGAGCAA  595

seq1  AGGGGTAGAATGAAAGGCTAGCTTTCCTGAACCCACACTTAAAAAAAGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGAATGAAAGGCTAGCTTTCCTGAACCCACACTTAAAAAAAGAG  645

seq1  TCAAGACTTCTCAGAGTAAGTCAAATCGCCTGGGCTTCATCCCCATCTCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTTCTCAGAGTAAGTCAAATCGCCTGGGCTTCATCCCCATCTCG  695

seq1  GTATCAGGCCCTCCAGTCCCTCCCTGCACTACTGTCCTTCTCCATGGGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGCCCTCCAGTCCCTCCCTGCACTACTGTCCTTCTCCATGGGCC  745

seq1  GTGAAGCCCCGAATTATTCCCGCATCTCAACTCCTTCCTTCCTCTACAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCCCCGAATTATTCCCGCATCTCAACTCCTTCCTTCCTCTACAAT  795

seq1  GAACTAGCAAGAGGTTATGCGTTTAGAACTCAAACTTGTGGGAAAGCTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCAAGAGGTTATGCGTTTAGAACTCAAACTTGTGGGAAAGCTAT  845

seq1  CCTTTTCTCCCTATGTCTTCTTTTGAGATGTGATCTTACTTTGTAGCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCCCTATGTCTTCTTTTGAGATGTGATCTTACTTTGTAGCACT  895

seq1  GCCTATCCCGGAACTCACTATGCAGATCAAGCTGGCCTCAAACTCAGAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCCCGGAACTCACTATGCAGATCAAGCTGGCCTCAAACTCAGAGA  945

seq1  TTCCTTTGCCCCCATTTTCCAACTGCTGGAATTC  979
      ||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCCCCCATTTTCCAACTGCTGGAATTC  979