BAC Information

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BAC

Clone NameB6Ng01-146O24
Chromosome3 (Build37)2 (Build37)
Map Location 96,208,965 - 96,209,39690,655,152 - 90,656,128
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O24.bB6Ng01-146O24.g
ACCDH943951DH943952
length251985
definitionDH943951|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O24, 5' end.DH943952|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,208,965 - 96,209,396)(90,655,152 - 90,656,128)
sequence
gaattctaacagacagttttaggacaaagattaaaaaaacaaaaaaacaa
ttattagataagtgtaaaaatctcatcaagaaaacaacctttgccaggca
gtggtgacacatgcctttaatcccagcacttgggagacagaggcaggcgg
atttctgagttcgaggccagcctggtctacacagtgagtttcaggacagc
cagggctacacaaagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaga
a
gaattctttttacctaccatggcatgtcagatatcgagttggaaatgtgg
ggcagccatcttggcatgctaagtcttcctttctttgtgtaatgttggca
gacagcgtatagaaaacagtccttccacttcccggatcaactgttgccca
tagacctctactttgctgagaaactaggtcaaattcctgactcacctctg
ccctgcaatagtgttaattgttttggtgttggggaggaaatgcaaatgtt
tctaactcctatttagtaagaccaacctcaagcctaaagataacttagaa
attgcaacagaaggtgaattcaactcttttatcttgtttatgcagagtaa
gaagccaggctttacagcatcatgctctccaaagagaagcacaaactcca
gcctagggccagctccagatgtgaagccaaactggtctaagactagatac
tctgccacaaggaaggaccatgccaccatggccgtgtacccatccttgca
tatatacacatacccataagtgtgctcttgctgcgacacacagctgcttc
ctccaaaggttttgggtagttttgttggtttgttttgtatgcaatgctgg
ggaccaaacctctagggcactgagcatactaggcaagtgctttaccattg
agctgtgtctccagccctcctgaaaagtttatgggttatacacatcttat
aagggggaaatctgtgaataaaatggaaactctatttatggtatactgtg
ttgtacactcaccacacactgaccttctctggtcttccgcttgtgcactg
tccttagatgcatgccttgttacctcgtgattttgttagggatttttttt
tttccttagatggagattatattttgatgaatagaaaagcctttattgaa
cgctggaagccttgttacacataaaaagacagaacagtgtatatacttca
tttaacccaatagaatgttcttctttaaagttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96208965_96209396
seq2: B6Ng01-146O24.b_82_298

seq1  AAAAACAAAAAAACAATTGAAGATGTACTCCTTTCACTATAGGGGGTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGTGGAGGGAGGCGGAGTTCGGTGAGTTGGAGGCTAGCCTGGTTCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GACAGGACTACATAGTGAGACAGGTCTCAAAAACAGAGCATAACAATTTT  150
                                  ||||||| |  | ||||||| |
seq2  ----------------------------AAAAACAAA--AAAACAATTAT  20

seq1  CTGAAAGAGACAAAGAAAGGAAGATGGAAGAGGCTGGAAGAGAGGAGACT  200
                           ||||  |||    || || |         
seq2  --------------------TAGAT--AAG----TGTAAAA---------  35

seq1  GGAACGGGGACCTGAAGGTTAAGGAGCACGGTGGTAAGTCGCCTTTAAGA  250
               | || |    | | ||  ||      ||    |||||    
seq2  ---------ATCTCA----TCAAGAAAAC------AA----CCTTT----  58

seq1  ATAAGTAAGTGAGCCGGGC-GTGGTGGCGCATGCCTTTAATCCCAGCACT  299
                  ||| ||| |||||| | |||||||||||||||||||||
seq2  ------------GCCAGGCAGTGGTGACACATGCCTTTAATCCCAGCACT  96

seq1  GGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  349
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  146

seq1  AAAGTGTGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  399
      | |||| ||| ||||||||||||||||||||| ||||||||||||||   
seq2  ACAGTGAGTTTCAGGACAGCCAGGGCTACACAAAGAAACCCTGTCTC---  193

seq1  AAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAA  432
               ||||||||||||||||||||||||
seq2  ---------AAAAAAAAAAAAAAAAAAAAAGAA  217

seq1: chr2_90655152_90656128
seq2: B6Ng01-146O24.g_68_1052

seq1  GAATTCTTTTTACCTACCATGGCATGTCAGATATCGAGTTGGAAATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTACCTACCATGGCATGTCAGATATCGAGTTGGAAATGTGG  50

seq1  GGCAGCCATCTTGGCATGCTAAGTCTTCCTTTCTTTGTGTAATGTTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCATCTTGGCATGCTAAGTCTTCCTTTCTTTGTGTAATGTTGGCA  100

seq1  GACAGCGTATAGAAAACAGTCCTTCCACTTCCCGGATCAACTGTTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTATAGAAAACAGTCCTTCCACTTCCCGGATCAACTGTTGCCCA  150

seq1  TAGACCTCTACTTTGCTGAGAAACTAGGTCAAATTCCTGACTCACCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCTACTTTGCTGAGAAACTAGGTCAAATTCCTGACTCACCTCTG  200

seq1  CCCTGCAATAGTGTTAATTGTTTTGGTGTTGGGGAGGAAATGCAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAATAGTGTTAATTGTTTTGGTGTTGGGGAGGAAATGCAAATGTT  250

seq1  TCTAACTCCTATTTAGTAAGACCAACCTCAAGCCTAAAGATAACTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCCTATTTAGTAAGACCAACCTCAAGCCTAAAGATAACTTAGAA  300

seq1  ATTGCAACAGAAGGTGAATTCAACTCTTTTATCTTGTTTATGCAGAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAACAGAAGGTGAATTCAACTCTTTTATCTTGTTTATGCAGAGTAA  350

seq1  GAAGCCAGGCTTTACAGCATCATGCTCTCCAAAGAGAAGCACAAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGCTTTACAGCATCATGCTCTCCAAAGAGAAGCACAAACTCCA  400

seq1  GCCTAGGGCCAGCTCCAGATGTGAAGCCAAACTGGTCTAAGACTAGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGGCCAGCTCCAGATGTGAAGCCAAACTGGTCTAAGACTAGATAC  450

seq1  TCTGCCACAAGGAAGGACCATGCCACCATGGCCGTGTACCCATCCTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACAAGGAAGGACCATGCCACCATGGCCGTGTACCCATCCTTGCA  500

seq1  TATATACACATACCCATAAGTGTGCTCTTGCTGCGACACACAGCTGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACATACCCATAAGTGTGCTCTTGCTGCGACACACAGCTGCTTC  550

seq1  CTCCAAAGGTTTTGGGTAGTTTTGTTGGTTTGTTTTGTATGCAATGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGTTTTGGGTAGTTTTGTTGGTTTGTTTTGTATGCAATGCTGG  600

seq1  GGACCAAACCTCTAGGGCACTGAGCATACTAGGCAAGTGCTTTACCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAACCTCTAGGGCACTGAGCATACTAGGCAAGTGCTTTACCATTG  650

seq1  AGCTGTGTCTCCAGCCCTCCTGAAAAGTTTATGGGTTATACACATCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCTCCAGCCCTCCTGAAAAGTTTATGGGTTATACACATCTTAT  700

seq1  AAGGGGGAAATCTGTGAATAAAATGGAAACTCTATTTATGGTATACTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAATCTGTGAATAAAATGGAAACTCTATTTATGGTATACTGTG  750

seq1  TTGTACACTCACCACACACTGACCTTCTCTGGTCTTCCGC-TGTGCACTG  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGTACACTCACCACACACTGACCTTCTCTGGTCTTCCGCTTGTGCACTG  800

seq1  TCCTTAGATGCATGCCTTGTTACCTCGTGAATTTGTTAGGGA-TTTTTTT  848
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TCCTTAGATGCATGCCTTGTTACCTCGTGATTTTGTTAGGGATTTTTTTT  850

seq1  TTTCCTTAGAT-GAGATTATATTTTGATGTATAGAAAAGCCTTTATTGAA  897
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTTCCTTAGATGGAGATTATATTTTGATGAATAGAAAAGCCTTTATTGAA  900

seq1  CGCT-GAAGCCT--GTACACATAAAAAGACAGAACAGTGTATATACTTCA  944
      |||| |||||||   |||||||||||||||||||||||||||||||||||
seq2  CGCTGGAAGCCTTGTTACACATAAAAAGACAGAACAGTGTATATACTTCA  950

seq1  TTTTAACCAATAG-ATGTTC-TCTTTAAAGTTAGA  977
      ||| | ||||||| |||||| ||||||||||||||
seq2  TTTAACCCAATAGAATGTTCTTCTTTAAAGTTAGA  985