BAC Information

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BAC

Clone NameB6Ng01-149D09
Chromosome3 (Build37)
Map Location 100,102,026 - 100,247,897
singlet/doubletdoublet
Overlap geneLOC195514
Upstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
Downstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D09.bB6Ng01-149D09.g
ACCDH945613DH945614
length1,120288
definitionDH945613|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D09, 5' end.DH945614|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,102,026 - 100,103,091)(100,247,611 - 100,247,897)
sequence
gaattcatcaaagaccttaacatacaatctgagacactgaatctgttaga
aaaatcatagttagtaactacaaaatataagtataggaaaggattttctg
aatcagactctatctgcctaagagttaaagcaagagtttaatcaagaaaa
tgcactccagtcttgcccatgggccaatctggtcagagcatttgcctctt
cccaaattagtgtcaagttgactagacctagctagcatagctagaaaatg
gaaagaatacaaatgtccttcaactgactaatggataataaaaaacagtt
catatacatagtggagtactattcaactataaataaaaatgaaaccataa
gacattcaagtatatgaatagaaccagaaaatattatattgaatgaggta
gcctagacccagaaactcatactgaatgttctttctcatctgtagttttt
agctccaaatcttcagatgtgaatatataacctagagtaattgcagaaac
cagaaatataaagtgggggatctctccttgggggattgctagaaagggaa
atggcaggatagattaatataaaagaaatgaggaaaaaaaacagagcatc
aactgggagtagggaagaggtcaatacaaaaggaggggggacccaggaac
tctgcctgactagagggacaggttcctttggtctgggccagtgccctgag
cagaccttgtgcttgaactccagcagccagtcccataacacccagtggga
agatccattctcaggagctctaacattcccaggatcatagagtcaaaggt
aaggtcacaacaactgccccagcactggaagtaactgggaccagtgggac
ccgggcatccaggaactctacctgaccagtggcatgagttccttctggtc
tgagtcagtgccctgggcagaccttgggtgggactccacagccagtccca
caacaacacccagaagaagctccactcccaggtgctctaacactcccaag
gaccacagaatcccagatctagagcttggtacacagaaacccagggcccc
gaaaacacctgactccagagctctgacacccaggatctcaggatccgaga
tccagaataacaaatcacag
tcagaaggagctggaggttcccatgtgtaggtgtttttaagtgaggaaag
caagccttgggtacagagctgcctcccccctcctccctcccactctgtcc
ttcccctccccctgaccccctcccccttgccttctggctttgctttctaa
aggcttcactcttgaagcctcctgggaggtgaggctaggggctccagggg
aattgacaggtctgtctgcctgcctcagtgtacaattaaaagcatgagtt
ttgtgtgtctctgtgtggtgcgtgtgcattttgtaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100102026_100103091
seq2: B6Ng01-149D09.b_115_1167

seq1  CTACAAAATATAAGTATAGGAAAGGATTTTCTGAATCAGACTCTATCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAATATAAGTATAGGAAAGGATTTTCTGAATCAGACTCTATCTGC  50

seq1  CTAAGAGTTAAAGCAAGAGTTTAATCAAGAAAATGCACTCCAGTCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTTAAAGCAAGAGTTTAATCAAGAAAATGCACTCCAGTCTTGCC  100

seq1  CATGGGCCAATCTGGTCAGAGCATTTGCCTCTTCCCAAATTAGTGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCAATCTGGTCAGAGCATTTGCCTCTTCCCAAATTAGTGTCAAG  150

seq1  TTGACTAGACCTAGCTAGCATAGCTAGAAAATGGAAAGAATACAAATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGACCTAGCTAGCATAGCTAGAAAATGGAAAGAATACAAATGTC  200

seq1  CTTCAACTGACTAATGGATAATAAAAAACAGTTCATATACATAGTGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTGACTAATGGATAATAAAAAACAGTTCATATACATAGTGGAGT  250

seq1  ACTATTCAACTATAAATAAAAATGAAACCATAAGACATTCAAGTATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCAACTATAAATAAAAATGAAACCATAAGACATTCAAGTATATGA  300

seq1  ATAGAACCAGAAAATATTATATTGAATGAGGTAGCCTAGACCCAGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCAGAAAATATTATATTGAATGAGGTAGCCTAGACCCAGAAACT  350

seq1  CATACTGAATGTTCTTTCTCATCTGTAGTTTTTAGCTCCAAATCTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAATGTTCTTTCTCATCTGTAGTTTTTAGCTCCAAATCTTCAGA  400

seq1  TGTGAATATATAACCTAGAGTAATTGCAGAAACCAGAAATATAAAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATATAACCTAGAGTAATTGCAGAAACCAGAAATATAAAGTGGG  450

seq1  GGATCTCTCCTTGGGGGATTGCTAGAAAGGGAAATGGCAGGATAGATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTCCTTGGGGGATTGCTAGAAAGGGAAATGGCAGGATAGATTAA  500

seq1  TATAAAAGAAATGAGGAAAAAAAACAGAGCATCAACTGGGAGTAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAAATGAGGAAAAAAAACAGAGCATCAACTGGGAGTAGGGAAG  550

seq1  AGGTCAATACAAAAGGAGGGGGGACCCAGGAACTCTGCCTGACTAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATACAAAAGGAGGGGGGACCCAGGAACTCTGCCTGACTAGAGGG  600

seq1  ACAGGTTCCTTTGGTCTGGGCCAGTGCCCTGAGCAGACCTTGTGCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCCTTTGGTCTGGGCCAGTGCCCTGAGCAGACCTTGTGCTTGAA  650

seq1  CTCCAGCAGCCAGTCCCATAACACCCAGTGGGAAGATCCATTCTCAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAGCCAGTCCCATAACACCCAGTGGGAAGATCCATTCTCAGGAG  700

seq1  CTCTAACATTCCCAGGATCATAGAGTCAAAGGTAAGGTCACAACAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACATTCCCAGGATCATAGAGTCAAAGGTAAGGTCACAACAACTGC  750

seq1  CCCAGCACTGGAAGTAACTGGGACCAGTGGGACCCGGGCATCCAGGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTGGAAGTAACTGGGACCAGTGGGACCCGGGCATCCAGGAACT  800

seq1  CTACCTGACCAGTGGCATGAGTTCCTTCTGGTCTGAGTCAGTGCCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGACCAGTGGCATGAGTTCCTTCTGGTCTGAGTCAGTGCCCTGGG  850

seq1  CAGACCTTGGGTGGGAACTCCACAGCCAGTCCCACAACAACACCCAGAAG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGGGTGGG-ACTCCACAGCCAGTCCCACAACAACACCCAGAAG  899

seq1  AAGCTCCACTCCCAGGTGCTCTAACACTCCC-AGGACCACAGAATCCCAG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AAGCTCCACTCCCAGGTGCTCTAACACTCCCAAGGACCACAGAATCCCA-  948

seq1  GATCCTAGGAGCTTGGTTACACCAGGAACCCAGGGCCCCAGAGACACCCT  999
      ||| ||| |||||||| |||| ||| |||||||||||||  | ||| |||
seq2  GAT-CTA-GAGCTTGG-TACA-CAGAAACCCAGGGCCCCGAAAACA-CCT  993

seq1  GACTCCCAGGAGCTCTGACACACCCAGGATCTCAGGATCCGAGGATCCCA  1049
      ||||||   ||||||||  ||||||||||||||||||||||| ||| |||
seq2  GACTCC--AGAGCTCTG--ACACCCAGGATCTCAGGATCCGA-GAT-CCA  1037

seq1  GAATAACAAAATCACAG  1066
      ||||||| |||||||||
seq2  GAATAAC-AAATCACAG  1053

seq1: chr3_100247611_100247897
seq2: B6Ng01-149D09.g_75_362 (reverse)

seq1  ACCTACACAGTGCACACGCACCACACAGAGACACACAAAACTCATGCTTT  50
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAAATGCACACGCACCACACAGAGACACACAAAACTCATGCTTT  50

seq1  TAATTGTACACTGAGGCAGGCAGACAGACCTGTCAATTCCCCTGGAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTACACTGAGGCAGGCAGACAGACCTGTCAATTCCCCTGGAGCCC  100

seq1  CTAGCCTCACCTCCCAGGAGGCTTCAAGAGTGAAGCCTTTAG-AAGCAAA  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAGCCTCACCTCCCAGGAGGCTTCAAGAGTGAAGCCTTTAGAAAGCAAA  150

seq1  GCCAGAAGGCAAGGGGGAGGGGGTCAGGGGGAGGGGAAGGACAGAGTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGGCAAGGGGGAGGGGGTCAGGGGGAGGGGAAGGACAGAGTGGG  200

seq1  AGGGAGGAGGGGGGAGGCAGCTCTGTACCCAAGGCTTGCTTTCCTCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGGGGGGAGGCAGCTCTGTACCCAAGGCTTGCTTTCCTCACTT  250

seq1  AAAAACACCTACACATGGGAACCTCCAGCTCCTTCTGA  287
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACCTACACATGGGAACCTCCAGCTCCTTCTGA  288