BAC Information

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BAC

Clone NameB6Ng01-149N23
Chromosome3 (Build37)
Map Location 40,542,682 - 40,725,988
singlet/doubletdoublet
Overlap geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N23.bB6Ng01-149N23.g
ACCDH946092DH946093
length1,081823
definitionDH946092|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N23, 5' end.DH946093|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,542,682 - 40,544,027)(40,725,167 - 40,725,988)
sequence
gaattccaactgtcacataatcataaaactatcttccgctggcaaaccac
gcctctgctagagcacaaggcaaatcatcaacagctgctttgaagcagcc
ccatttccagcaccttgaattaaaacaaaaacatattcttatatttctgg
tttggttttgttttgttttaagaaaccaaattccagaattctcactccaa
tgagatttgagtctgtggtgcagtggtgcattcgagtccctgtcacaggt
gcaccctgacctgtaaactgttggagtggcactgaatcaatcactcctac
actggccagttcagagttgctcaggagctagtgcaagatagtgtgcagca
atagaagactgaacaaggacaaggttaagtcagtttgtggtagttcctac
ccagaatggatgtttcctactctatcccatagagattgtgcaaacaatat
gtgtttgtgagactttctgtattagtcagagttctctagaggaacaaaac
tgatcgaatgaatatagataggatttatgagtagcttactactatttatg
agtagctagtccaaaaatggctatgtaccgacagaaagtctaagactcca
gtagttgttaaattcatgtctcagctactctttactatgccccagagtcc
taaacaagtaggttctaatgccaatgaaggatagttatttaaatggagga
tagtgacttgtattctgcttatattagaagaaagctgatctacctgccag
tttttaataagatttaatattatcagttttaaaaataattttgtgtattc
tcagttttcttgttgaaataagatatggcagatctgaattattgaagttg
gtgccagtgaaaagagcagaaactgggatgttccgtttaaatgctaacag
tgcaacctattacacattagactctctgcacacacaatcccacccctgta
tcaatgcttatttgagtgaagttgctgagagtggcatagtaatatctttg
tatttgaaactgttgacatggatattgatttacaagtagaacaagttaag
tattttatccttctaagattcgttgtcagta
gaattctcctaaagagaagcctggtctctgcaaccagaggcttggtagat
agcaggtgttaaactgtaggttggctgaggttctgattccaaactgctat
ctcctcacagaactaatgtaagaggcatcaactaaataatcattacgtgc
atttgtgagcattttgacaagatttcattggaccgctgaagcaggagcag
ggttcccgccaggctgggctccacagtgaagccctgtttcaataatgtta
acaagaacaaaccgtatgctctcctccatcaaaattgatcacagtccatt
tgaaaagaccccactttctttgttttctgttcttaagttagttttctatc
tctcagtacaaaatttattttggccttgcatggaaatgacaaattctgag
gttctgcttcctgttaccgcccggttctcttagtagaatacactagtgtg
tgaggctctgagacaagggtatttagggtggacctggtccatctattttc
ttttgtagtctttgtttacttactttggatgtaaacagatttaagatgag
tttttaaaggagagaagcaggacaagacaatccatggctgtaatcccatc
acgtgggaggttcaagtaggccagtgtggactcctgagtgaggcatctca
ttcagttcccacctccctgaccataaccaaagcaagcaagagcagtaaac
tgattaaaagatttaaactgcaagctgtttgtactcctgctgaatactct
aaaacaaacaaacaaacaaactggactactggttttcaggactatggatc
aagtgtggggttgggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40542682_40544027
seq2: B6Ng01-149N23.b_48_1128

seq1  GAATTCCAACTGTCACATAATCATAAAACTATCTTCCGCTGGCAAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGTCACATAATCATAAAACTATCTTCCGCTGGCAAACCAC  50

seq1  GCCTCTGCTAGAGCACAAGGCAAATCATCAACAGCTGCTTTGAAGCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCTAGAGCACAAGGCAAATCATCAACAGCTGCTTTGAAGCAGCC  100

seq1  CCATTTCCAGCACCTTGAATTAAAACAAAAACATATTCTTATATTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCAGCACCTTGAATTAAAACAAAAACATATTCTTATATTTCTGG  150

seq1  TTTGGTTTTGTTTTGTTTTAAGAAACCAAATTCCAGAATTCTCACTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGTTTTGTTTTAAGAAACCAAATTCCAGAATTCTCACTCCAA  200

seq1  TGAGATTTGAGTCTGTGGTGCAGTGGTGCATTCGAGTCCCTGTCACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGTCTGTGGTGCAGTGGTGCATTCGAGTCCCTGTCACAGGT  250

seq1  GCACCCTGACCTGTAAACTGTTGGAGTGGCACTGAATCAATCACTCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGACCTGTAAACTGTTGGAGTGGCACTGAATCAATCACTCCTAC  300

seq1  ACTGGCCAGTTCAGAGTTGCTCAGGAGCTAGTGCAAGATAGTGTGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGTTCAGAGTTGCTCAGGAGCTAGTGCAAGATAGTGTGCAGCA  350

seq1  ATAGAAGACTGAACAAGGACAAGGTTAAGTCAGTTTGTGGTAGTTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGACTGAACAAGGACAAGGTTAAGTCAGTTTGTGGTAGTTCCTAC  400

seq1  CCAGAATGGATGTTTCCTACTCTATCCCATAGAGATTGTGCAAACAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGGATGTTTCCTACTCTATCCCATAGAGATTGTGCAAACAATAT  450

seq1  GTGTTTGTGAGACTTTCTGTATTAGTCAGAGTTCTCTAGAGGAACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGAGACTTTCTGTATTAGTCAGAGTTCTCTAGAGGAACAAAAC  500

seq1  TGATCGAATGAATATAGATAGGATTTATGAGTAGCTTACTACTATTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGAATGAATATAGATAGGATTTATGAGTAGCTTACTACTATTTATG  550

seq1  AGTAGCTAGTCCAAAAATGGCTATGTACCGACAGAAAGTCTAAGACTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAGTCCAAAAATGGCTATGTACCGACAGAAAGTCTAAGACTCCA  600

seq1  GTAGTTGTTAAATTCATGTCTCAGCTACTCTTTACTATGCCCCAGAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTTAAATTCATGTCTCAGCTACTCTTTACTATGCCCCAGAGTCC  650

seq1  TAAACAAGTAGGTTCTAATGCCAATGAAGGATAGTTATTTAAATGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGTAGGTTCTAATGCCAATGAAGGATAGTTATTTAAATGGAGGA  700

seq1  TAGTGACTTGTATTCTGCTTATATTAGAAGAAAGCTGATCTACCTGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTGTATTCTGCTTATATTAGAAGAAAGCTGATCTACCTGCCAG  750

seq1  TTTTTAATAAGATTTAATATTATCAGTTTTAAAAATAATTTTGTGTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATAAGATTTAATATTATCAGTTTTAAAAATAATTTTGTGTATTC  800

seq1  TCAGTTTTCTTGTTGAAATAAGATATGGCAGATCTGAATTATTGAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCTTGTTGAAATAAGATATGGCAGATCTGAATTATTGAAGTTG  850

seq1  GTGCCAGTGAAAAGAGCAGAAACTGGGATGTTCCGTTTAAATGCTAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTGAAAAGAGCAGAAACTGGGATGTTCCGTTTAAATGCTAACAG  900

seq1  TGCAACCTATTACACATTAGACTCTCTGCACACACAAATCCCACCCCTGT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  TGCAACCTATTACACATTAGACTCTCTGCACACAC-AATCCCACCCCTG-  948

seq1  TATCAATGCTTATTTGAGTGAAGTTGCTGAAGAGTGGCATAGTAATAATC  1000
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TATCAATGCTTATTTGAGTGAAGTTGCTG-AGAGTGGCATAGTAAT-ATC  996

seq1  TTTGGTATTTGAAACTTGTTGACAATGGGATATTTGATTTACACAGTAAA  1050
      ||| ||||||||||| ||||||||   ||||| |||||||||| |||  |
seq2  TTT-GTATTTGAAAC-TGTTGACA--TGGATA-TTGATTTACA-AGT--A  1038

seq1  GAAC-AGTGAAGTATTTTATCCCTTCTAAGGAATTTTGGTTTTGTCAGTA  1099
      |||| ||| ||||||||||| |||||||||  |||      |||||||||
seq2  GAACAAGTTAAGTATTTTAT-CCTTCTAAG--ATT----CGTTGTCAGTA  1081

seq1  ACAAAAGCCTAAATGGAAGCCTTGACTGAAGAGAGTGAAATGCAGCTTTT  1149
                                                        
seq2  --------------------------------------------------  1081

seq1  ATCACAGTTATGCTTTGTTCCATTTTTCTACTGATATGGAAAAATACGAC  1199
                                                        
seq2  --------------------------------------------------  1081

seq1  TTAGGACGATTTGCTATCTCATAGACAATGCTACATAGCTAAGTTTTGAT  1249
                                                        
seq2  --------------------------------------------------  1081

seq1  GCCAAAATGTTCTCTATGGATGAAAAATCCTTATACCCTAGGGTTACTAT  1299
                                                        
seq2  --------------------------------------------------  1081

seq1  CCAAAAGTATTTTCTGAACTCATTCATTACATAAGGGGTTGTCAGTA  1346
                                                     
seq2  -----------------------------------------------  1081

seq1: chr3_40725167_40725988
seq2: B6Ng01-149N23.g_69_891 (reverse)

seq1  -TCCCCCCCCCAACCCCACACTTGATCCATAGTCCTGAAAACCAGTAGTC  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCAACCCCACACTTGATCCATAGTCCTGAAAACCAGTAGTC  50

seq1  CAGTTTGTTTGTTTGTTTGTTTTAGAGTATTCAGCAGGAGTACAAACAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTTGTTTGTTTGTTTTAGAGTATTCAGCAGGAGTACAAACAGC  100

seq1  TTGCAGTTTAAATCTTTTAATCAGTTTACTGCTCTTGCTTGCTTTGGTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTAAATCTTTTAATCAGTTTACTGCTCTTGCTTGCTTTGGTTA  150

seq1  TGGTCAGGGAGGTGGGAACTGAATGAGATGCCTCACTCAGGAGTCCACAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGGAGGTGGGAACTGAATGAGATGCCTCACTCAGGAGTCCACAC  200

seq1  TGGCCTACTTGAACCTCCCACGTGATGGGATTACAGCCATGGATTGTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACTTGAACCTCCCACGTGATGGGATTACAGCCATGGATTGTCTT  250

seq1  GTCCTGCTTCTCTCCTTTAAAAACTCATCTTAAATCTGTTTACATCCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTCTCTCCTTTAAAAACTCATCTTAAATCTGTTTACATCCAAA  300

seq1  GTAAGTAAACAAAGACTACAAAAGAAAATAGATGGACCAGGTCCACCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAACAAAGACTACAAAAGAAAATAGATGGACCAGGTCCACCCTA  350

seq1  AATACCCTTGTCTCAGAGCCTCACACACTAGTGTATTCTACTAAGAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTTGTCTCAGAGCCTCACACACTAGTGTATTCTACTAAGAGAAC  400

seq1  CGGGCGGTAACAGGAAGCAGAACCTCAGAATTTGTCATTTCCATGCAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGTAACAGGAAGCAGAACCTCAGAATTTGTCATTTCCATGCAAGG  450

seq1  CCAAAATAAATTTTGTACTGAGAGATAGAAAACTAACTTAAGAACAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAATTTTGTACTGAGAGATAGAAAACTAACTTAAGAACAGAAA  500

seq1  ACAAAGAAAGTGGGGTCTTTTCAAATGGACTGTGATCAATTTTGATGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAGTGGGGTCTTTTCAAATGGACTGTGATCAATTTTGATGGAG  550

seq1  GAGAGCATACGGTTTGTTCTTGTTAACATTATTGAAACAGGGCTTCACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATACGGTTTGTTCTTGTTAACATTATTGAAACAGGGCTTCACTG  600

seq1  TGGAGCCCAGCCTGGCGGGAACCCTGCTCCTGCTTCAGCGGTCCAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCAGCCTGGCGGGAACCCTGCTCCTGCTTCAGCGGTCCAATGAA  650

seq1  ATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCAAAATGCTCACAAATGCACGTAATGATTATTTAGTTGATGCC  700

seq1  TCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTAGTTCTGTGAGGAGATAGCAGTTTGGAATCAGAACCTCAGC  750

seq1  CAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACAGTTTAACACCTGCTATCTACCAAGCCTCTGGTTGCAGAGAC  800

seq1  CAGGCTTCTCTTTAGGAGAATTC  822
      |||||||||||||||||||||||
seq2  CAGGCTTCTCTTTAGGAGAATTC  823