BAC Information

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BAC

Clone NameB6Ng01-151E06
Chromosome3 (Build37)
Map Location 65,477,895 - 65,665,356
singlet/doubletdoublet
Overlap geneEG624866
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151E06.bB6Ng01-151E06.g
ACCDH947132DH947133
length1,144670
definitionDH947132|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E06, 5' end.DH947133|Mus musculus domesticus DNA, BAC clone: B6Ng01-151E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,664,222 - 65,665,356)(65,477,895 - 65,478,564)
sequence
gaattcctagcacatcttcaaagccagtggcttttcacctaggtagctgc
tgttgctggatgaagcttgtgagtaagggagggttgctggttctcctgga
accgaatggatactgatcgtcttgtcattgatgtcctcgaggcttccttc
ctgcagtgtgaagttctgaatgatgattgatcagacttttgttgcttgga
aagagaaatgaacaagaaagcacagctcagagagttttgttgagtagcca
aagaccagccaggaaggatgctttgagccagaactccctgcctgacgcct
gctccttacccatccatggaaattcttgtcagtaggatggctgacccctg
ttgtgaccctgccctgggctcctgggcaagctcaggtcggtcccagcagg
gccatcagctgactaaggtccaatctccatgtggttccaccacatgggag
ctttccttctttttctaaacattgtgacgggcacctgctgtacctctctc
tccaaaaggtgtttttgtattctgcttctttgtgtttgaattgcatcatc
ctggcttggctgctagcactcagagagtgggaatatgctgtctttatctt
cctgtgcctggaagcacgggttgaatattttagtgagagtaagaggataa
tggaggtgcgtatggacgctcgcccagcctttctcttatattcctttaat
gccacctagtcccctgggataacctgactcccccccacccccccattgtc
cctcatcatgctcagctcctggcgtgcacagggcttgagcctttactttc
ttatttagtgtctacatcacctttctacctctgcccagtcatggctgccc
atctgagaatgggcgactttcaggggactgggaattccacttaatgcttt
ttgtcactgggaagtggacacagagagggctaagattacccggtggactt
cagacttgtcaaagggagtcactagggactgaattattatattattatta
ttattattactattactattgtattgaccttcaggctggcctcaaacttt
gcatgtaagtccagcattgagtcagaacccctggattttcttcctctgat
tcccagtgctggggatcccgaacaagtaactgccatcatcctgg
gaattctttcacgcttacagtttaaactgaaagcagcacttagagatcag
cagtccgaactgtgtatcttctcctctcagaagtgttgactcgttttaga
gactgatgtcctcttgtgagaaaaaaataaaacaaagttttgcgtttttg
ctaggggacatgactaggtcaaaaagaacagcaacaaagtagtggaaagt
cagttcccacaggcagagttaatcccttgtttttaaaatggtgacaaaat
gaagacattacatgattttagccaggagatcttgattaccacccaacaca
aagtaaagggagcagggttgtttattttgcaaaacagaagtgtctgtgca
ggggctggagagcacactgttccttctgggtaacaagccttccccagtac
taatggctcgtgtcgtcctgtttcagtaaagtaattttagtactttggaa
ctttgaaatttattcaggataacagttttatatttccaagcacaggttgt
cactgccagagaaaataaacttaatttttcaggtcgctttgggccactgt
ggttaggttcagattttgtattgagttagagcggtgaaagaaagaaagtg
gtctcagaaatgttagattgagcattctggaaaggtgtgtgtgtgtgtat
tgtgttatgtgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65664222_65665356
seq2: B6Ng01-151E06.b_45_1188 (reverse)

seq1  CCAGGAATGATAGCAG-TACTTGTCTGTGAT-CCCAGCACTGGAAAATCA  48
      ||||| ||||| |||| |||||||  | ||| |||||||||||  |||||
seq2  CCAGG-ATGATGGCAGTTACTTGTTCGGGATCCCCAGCACTGG-GAATCA  48

seq1  GAAGCAGGAAAACCAGGGG-TCTGACACAATGCTGGACTTACATGCAAAG  97
      || | || ||| ||||||| |||||| |||||||||||||||||||||||
seq2  GAGGAAGAAAATCCAGGGGTTCTGACTCAATGCTGGACTTACATGCAAAG  98

seq1  TTTGAGGCCAGCCTGAA-GTCAATAACAATAGTAATAGTAATAATAATAA  146
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGAAGGTCAAT-ACAATAGTAATAGTAATAATAATAA  147

seq1  TAATAATAATAATAATTCAGT-CCTAGTGACTCCCTTTGACAAGTCTGAA  195
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATAAT-ATAATAATTCAGTCCCTAGTGACTCCCTTTGACAAGTCTGAA  196

seq1  GTCCACCGGGT-ATC-TAG-CCTCTCTGTGT-CACTT-CCAGTGACAAAA  240
      ||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||
seq2  GTCCACCGGGTAATCTTAGCCCTCTCTGTGTCCACTTCCCAGTGACAAAA  246

seq1  AGCATTAAGTGGAA-TCCCAGTCCCCTGAAAGTCGCCCA-TCTCAGATGG  288
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AGCATTAAGTGGAATTCCCAGTCCCCTGAAAGTCGCCCATTCTCAGATGG  296

seq1  GCAGCCATGACTGGGCAGAGGTAGAAAGGTGATGTAGACACTAAATAAG-  337
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCAGCCATGACTGGGCAGAGGTAGAAAGGTGATGTAGACACTAAATAAGA  346

seq1  AAGTAAAGGCTCAAGCCCTGTGCACGCCAGGAGCTGAGCATGATGAGGGA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGGCTCAAGCCCTGTGCACGCCAGGAGCTGAGCATGATGAGGGA  396

seq1  CAATGGGGGGGTGGGGGGGAGTCAGGTTATCCCAGGGGACTAGGTGGCAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGGGGTGGGGGGGAGTCAGGTTATCCCAGGGGACTAGGTGGCAT  446

seq1  TAAAGGAATATAAGAGAAAGGCTGGGCGAGCGTCCATACGCACCTCCATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATATAAGAGAAAGGCTGGGCGAGCGTCCATACGCACCTCCATT  496

seq1  ATCCTCTTACTCTCACTAAAATATTCAACCCGTGCTTCCAGGCACAGGAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTACTCTCACTAAAATATTCAACCCGTGCTTCCAGGCACAGGAA  546

seq1  GATAAAGACAGCATATTCCCACTCTCTGAGTGCTAGCAGCCAAGCCAGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGACAGCATATTCCCACTCTCTGAGTGCTAGCAGCCAAGCCAGGA  596

seq1  TGATGCAATTCAAACACAAAGAAGCAGAATACAAAAACACCTTTTGGAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAATTCAAACACAAAGAAGCAGAATACAAAAACACCTTTTGGAGA  646

seq1  GAGAGGTACAGCAGGTGCCCGTCACAATGTTTAGAAAAAGAAGGAAAGCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTACAGCAGGTGCCCGTCACAATGTTTAGAAAAAGAAGGAAAGCT  696

seq1  CCCATGTGGTGGAACCACATGGAGATTGGACCTTAGTCAGCTGATGGCCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGGTGGAACCACATGGAGATTGGACCTTAGTCAGCTGATGGCCC  746

seq1  TGCTGGGACCGACCTGAGCTTGCCCAGGAGCCCAGGGCAGGGTCACAACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGACCGACCTGAGCTTGCCCAGGAGCCCAGGGCAGGGTCACAACA  796

seq1  GGGGTCAGCCATCCTACTGACAAGAATTTCCATGGATGGGTAAGGAGCAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGCCATCCTACTGACAAGAATTTCCATGGATGGGTAAGGAGCAG  846

seq1  GCGTCAGGCAGGGAGTTCTGGCTCAAAGCATCCTTCCTGGCTGGTCTTTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGGCAGGGAGTTCTGGCTCAAAGCATCCTTCCTGGCTGGTCTTTG  896

seq1  GCTACTCAACAAAACTCTCTGAGCTGTGCTTTCTTGTTCATTTCTCTTTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCAACAAAACTCTCTGAGCTGTGCTTTCTTGTTCATTTCTCTTTC  946

seq1  CAAGCAACAAAAGTCTGATCAATCATCATTCAGAACTTCACACTGCAGGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACAAAAGTCTGATCAATCATCATTCAGAACTTCACACTGCAGGA  996

seq1  AGGAAGCCTCGAGGACATCAATGACAAGACGATCAGTATCCATTCGGTTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCTCGAGGACATCAATGACAAGACGATCAGTATCCATTCGGTTC  1046

seq1  CAGGAGAACCAGCAACCCTCCCTTACTCACAAGCTTCATCCAGCAACAGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAACCAGCAACCCTCCCTTACTCACAAGCTTCATCCAGCAACAGC  1096

seq1  AGCTACCTAGGTGAAAAGCCACTGGCTTTGAAGATGTGCTAGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTAGGTGAAAAGCCACTGGCTTTGAAGATGTGCTAGGAATTC  1144

seq1: chr3_65477895_65478564
seq2: B6Ng01-151E06.g_69_738

seq1  GAATTCTTTCACGCTTACAGTTTAAACTGAAAGCAGCACTTAGAGATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACGCTTACAGTTTAAACTGAAAGCAGCACTTAGAGATCAG  50

seq1  CAGTCCGAACTGTGTATCTTCTCCTCTCAGAAGTGTTGACTCGTTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGAACTGTGTATCTTCTCCTCTCAGAAGTGTTGACTCGTTTTAGA  100

seq1  GACTGATGTCCTCTTGTGAGAAAAAAATAAAACAAAGTTTTGCGTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGTCCTCTTGTGAGAAAAAAATAAAACAAAGTTTTGCGTTTTTG  150

seq1  CTAGGGGACATGACTAGGTCAAAAAGAACAGCAACAAAGTAGTGGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGACATGACTAGGTCAAAAAGAACAGCAACAAAGTAGTGGAAAGT  200

seq1  CAGTTCCCACAGGCAGAGTTAATCCCTTGTTTTTAAAATGGTGACAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCACAGGCAGAGTTAATCCCTTGTTTTTAAAATGGTGACAAAAT  250

seq1  GAAGACATTACATGATTTTAGCCAGGAGATCTTGATTACCACCCAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATTACATGATTTTAGCCAGGAGATCTTGATTACCACCCAACACA  300

seq1  AAGTAAAGGGAGCAGGGTTGTTTATTTTGCAAAACAGAAGTGTCTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGGGAGCAGGGTTGTTTATTTTGCAAAACAGAAGTGTCTGTGCA  350

seq1  GGGGCTGGAGAGCACACTGTTCCTTCTGGGTAACAAGCCTTCCCCAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGAGCACACTGTTCCTTCTGGGTAACAAGCCTTCCCCAGTAC  400

seq1  TAATGGCTCGTGTCGTCCTGTTTCAGTAAAGTAATTTTAGTACTTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTCGTGTCGTCCTGTTTCAGTAAAGTAATTTTAGTACTTTGGAA  450

seq1  CTTTGAAATTTATTCAGGATAACAGTTTTATATTTCCAAGCACAGGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATTTATTCAGGATAACAGTTTTATATTTCCAAGCACAGGTTGT  500

seq1  CACTGCCAGAGAAAATAAACTTAATTTTTCAGGTCGCTTTGGGCCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAGAGAAAATAAACTTAATTTTTCAGGTCGCTTTGGGCCACTGT  550

seq1  GGTTAGGTTCAGATTTTGTATTGAGTTAGAGCGGAGAAAGAAAGAAAGTG  600
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTTAGGTTCAGATTTTGTATTGAGTTAGAGCGGTGAAAGAAAGAAAGTG  600

seq1  GTCTCAGAAATGTTAGATTGAGCATTCTGGAAAGGTGTGTGTGTGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAATGTTAGATTGAGCATTCTGGAAAGGTGTGTGTGTGTGTAT  650

seq1  TGTGTTATGTGTGTGTGTAT  670
      ||||||||||||||||||||
seq2  TGTGTTATGTGTGTGTGTAT  670