BAC Information

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BAC

Clone NameB6Ng01-151J19
Chromosome3 (Build37)
Map Location 127,974,565 - 128,127,924
singlet/doubletdoublet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151J19.bB6Ng01-151J19.g
ACCDH947388DH947389
length1,056854
definitionDH947388|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J19, 5' end.DH947389|Mus musculus domesticus DNA, BAC clone: B6Ng01-151J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,126,865 - 128,127,924)(127,974,565 - 127,975,417)
sequence
gaattcttagacaaatggatggatctagaggatatcatcctgagtgaggt
aaccgaatcagaaaagaacacacatgatatacactcaatgataagtagat
attagcccagaaacttagaatacccaagatacaatttgcaaaacacatga
aactcaagaaggaagaccaaagtgtggatactcggatccttcttagaagg
ggaaacaaaatacccatggaaggagttccagaaacaaagtgttgagcaga
gactgaaggaatgaccatccagagagcttctatcttatgcttacagcttc
aacggttcaggtgtgggagctgagagtttccatctcatactcaagtcgga
gtcacagggaaatctagctaacttggaatgaatggtatgggcatttgaaa
ttttaaagaccaccccttgtgacatgccacacctcttaatccctcctaag
cagtctaccagctgtaacccaacattcatatacatgagcctatagggctc
attttcattcaatccacaacactgggttacgaggtctttctgacaaactg
aatctgcaacgttgagggcaaggagaacagaaatgatttccatatatcta
tttttcctgaacatggaaaaacagaattaaaatataaaacacaggaaagg
aaaaatgcatacatactcaccaaaaacaatgtagaaagagatgagtaaga
aagtcaaagaaaaagtttcagcttataggagatttatttgtactttgtaa
ccatgattttacacatattaaatattaaggctatatcatggtttttccat
ttttttatacactagtttgaatttactgcatggtagaaagatgggatcta
ctgttaacttgcacttccttacaatctactaaattaatctgtgcagagga
gtgaaagttaaatgaagatacagatttgctcttttgcaatcatgtgttta
ttctgtatctttcatggcatagcttcaatgtatttcagttacttttctat
tgctttgataaaataccatgaccaagcaacttgtacatcgaaaagtttgt
gtgtgt
gaattctttgtttagttcttgtacttagtcagtgtcacacaatggagaag
aagatttgaggacaggctcagcagtcccaaatgatatgaagactacagat
cagtggctctcaacctgtgggttatgatgcttttgtcaggcttgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtttgacacaactctttcactggggttgt
atttcagatatcctgcatatcagatgtttacaattcacaacagtgtcaac
attacagttataaagtaacaacaaaataattttatggttggggtcatcac
accaggaagaactatgaatggatcacagctttgggaaggttgaaacccat
taatctaggtgaaaaaatatatacttttctttttaaggtcccctaaaagg
acaggtgtggaagaaagttaggacattaaatttttttcttttttttttta
atttttattagatattttctttatttacattacaaatgctatcctgaaag
ttccctgtaccctccccctaccctgctcccccacccacccactcccactt
cttggccctagcgttcccctgtactgaggcatagtttgcaagaccaaggg
gcctctcctccctggcaaaatacagaagtggattctcacagtcatctatt
ggatggaacacagggcccccaaatagaggagctagagaaagtacccaagg
agctgaaagggcctgcaaccctataggtggaaacaacaatatgaactaac
cagtatccccggagcaggggtttctagctgcataagtagcagaagatggc
ctggtcagccatcttgggacatttatgtcttaaaaggagaagccttctga
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128126865_128127924
seq2: B6Ng01-151J19.b_45_1100 (reverse)

seq1  ACACACACAAACTTTTCGATGTACAAGTTGCCTTGGTCATGGTATTTTAT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACACACAAACTTTTCGATGTACAAGTTG-CTTGGTCATGGTATTTTAT  49

seq1  CAAAGCAATAGAAAAGTAACTGAAATACATTTGAAGCTAATGCCATGAAA  100
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CAAAGCAATAGAAAAGTAACTGAAATACA-TTGAAGCT-ATGCCATGAAA  97

seq1  GATACAGAATAAACACATGATTGCAAAAGAGCAAATCTGTATCTTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATACAGAATAAACACATGATTGCAAAAGAGCAAATCTGTATC-TTCATT  146

seq1  TAACTTTCACTCCTCTGCACAGATTAATTTAGTAGATTGTAAGGAAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCACTCCTCTGCACAGATTAATTTAGTAGATTGTAAGGAAGTGC  196

seq1  AAGTTAACAGTAGATCCCATCTTTCTACCATGCAGTAAATTCAAACTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACAGTAGATCCCATCTTTCTACCATGCAGTAAATTCAAACTAGT  246

seq1  GTATAAAAAAATGGAAAAACCATGATATAGCCTTAATATTTAATATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAAAATGGAAAAACCATGATATAGCCTTAATATTTAATATGTGT  296

seq1  AAAATCATGGTTACAAAGTACAAATAAATCTCCTATAAGCTGAAACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGGTTACAAAGTACAAATAAATCTCCTATAAGCTGAAACTTTT  346

seq1  TCTTTGACTTTCTTACTCATCTCTTTCTACATTGTTTTTGGTGAGTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTTTCTTACTCATCTCTTTCTACATTGTTTTTGGTGAGTATGT  396

seq1  ATGCATTTTTCCTTTCCTGTGTTTTATATTTTAATTCTGTTTTTCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTTCCTTTCCTGTGTTTTATATTTTAATTCTGTTTTTCCATGT  446

seq1  TCAGGAAAAATAGATATATGGAAATCATTTCTGTTCTCCTTGCCCTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAAATAGATATATGGAAATCATTTCTGTTCTCCTTGCCCTCAAC  496

seq1  GTTGCAGATTCAGTTTGTCAGAAAGACCTCGTAACCCAGTGTTGTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGATTCAGTTTGTCAGAAAGACCTCGTAACCCAGTGTTGTGGATT  546

seq1  GAATGAAAATGAGCCCTATAGGCTCATGTATATGAATGTTGGGTTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAATGAGCCCTATAGGCTCATGTATATGAATGTTGGGTTACAGC  596

seq1  TGGTAGACTGCTTAGGAGGGATTAAGAGGTGTGGCATGTCACAAGGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACTGCTTAGGAGGGATTAAGAGGTGTGGCATGTCACAAGGGGTG  646

seq1  GTCTTTAAAATTTCAAATGCCCATACCATTCATTCCAAGTTAGCTAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAATTTCAAATGCCCATACCATTCATTCCAAGTTAGCTAGATT  696

seq1  TCCCTGTGACTCCGACTTGAGTATGAGATGGAAACTCTCAGCTCCCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGACTCCGACTTGAGTATGAGATGGAAACTCTCAGCTCCCACAC  746

seq1  CTGAACCGTTGAAGCTGTAAGCATAAGATAGAAGCTCTCTGGATGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCGTTGAAGCTGTAAGCATAAGATAGAAGCTCTCTGGATGGTCAT  796

seq1  TCCTTCAGTCTCTGCTCAACACTTTGTTTCTGGAACTCCTTCCATGGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTCTCTGCTCAACACTTTGTTTCTGGAACTCCTTCCATGGGTA  846

seq1  TTTTGTTTCCCCTTCTAAGAAGGATCCGAGTATCCACACTTTGGTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCCCCTTCTAAGAAGGATCCGAGTATCCACACTTTGGTCTTCC  896

seq1  TTCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTGGGTATTCTAAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTGGGTATTCTAAGTTT  946

seq1  CTGGGCTAATATCTACTTATCATTGAGTGTATATCATGTGTGTTCTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAATATCTACTTATCATTGAGTGTATATCATGTGTGTTCTTTTC  996

seq1  TGATTCGGTTACCTCACTCAGGATGATATCCTCTAGATCCATCCATTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGGTTACCTCACTCAGGATGATATCCTCTAGATCCATCCATTTGT  1046

seq1  CTAAGAATTC  1060
      ||||||||||
seq2  CTAAGAATTC  1056

seq1: chr3_127974565_127975417
seq2: B6Ng01-151J19.g_69_922

seq1  GAATTCTTTGTTTAGTTCTTGTACTTAGTCAGTGTCACACAATGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGTTCTTGTACTTAGTCAGTGTCACACAATGGAGAAG  50

seq1  AAGATTTGAGGACAGGCTCAGCAGTCCCAAATGATATGAAGACTACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGAGGACAGGCTCAGCAGTCCCAAATGATATGAAGACTACAGAT  100

seq1  CAGTGGCTCTCAACCTGTGGGTTATGATGCTTTTGTCAGGCTTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTCTCAACCTGTGGGTTATGATGCTTTTGTCAGGCTTGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTTTGACACAACTCTTTCACTGGGGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTTGACACAACTCTTTCACTGGGGTTGT  200

seq1  ATTTCAGATATCCTGCATATCAGATGTTTACAATTCACAACAGTGTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATATCCTGCATATCAGATGTTTACAATTCACAACAGTGTCAAC  250

seq1  ATTACAGTTATAAAGTAACAACAAAATAATTTTATGGTTGGGGTCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTATAAAGTAACAACAAAATAATTTTATGGTTGGGGTCATCAC  300

seq1  ACCAGGAAGAACTATGAATGGATCACAGCTTTGGGAAGGTTGAAACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGAACTATGAATGGATCACAGCTTTGGGAAGGTTGAAACCCAT  350

seq1  TAATCTAGGTGAAAAAATATATACTTTTCTTTTTAAGGTCCCCTAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGGTGAAAAAATATATACTTTTCTTTTTAAGGTCCCCTAAAAGG  400

seq1  ACAGGTGTGGAAGAAAGTTAGGACATTAAATTTTTTTCTTTTTTTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGGAAGAAAGTTAGGACATTAAATTTTTTTCTTTTTTTTTTTA  450

seq1  ATTTTTATTAGATATTTTCTTTATTTACATTACAAATGCTATCCTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTAGATATTTTCTTTATTTACATTACAAATGCTATCCTGAAAG  500

seq1  TTCCCTGTACCCTCCCCCTACCCTGCTCCCCCACCCACCCACTCCCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTACCCTCCCCCTACCCTGCTCCCCCACCCACCCACTCCCACTT  550

seq1  CTTGGCCCTAGCGTTCCCCTGTACTGAGGCATAGTTTGCAAGACCAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCTAGCGTTCCCCTGTACTGAGGCATAGTTTGCAAGACCAAGGG  600

seq1  GCCTCTCCTCCCTGGC-AAATACAGAAGTGGATGCTCACAGTCATCTATT  649
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GCCTCTCCTCCCTGGCAAAATACAGAAGTGGATTCTCACAGTCATCTATT  650

seq1  GGATGGAACACAGGGCCCCC-AATAGAGGAGCTAGAGAAAGTACCCAAGG  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATGGAACACAGGGCCCCCAAATAGAGGAGCTAGAGAAAGTACCCAAGG  700

seq1  AGCTGAAAGGGTCTGCAACCCTATAGGTGG-AACAACAATATGAACTAAC  747
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  AGCTGAAAGGGCCTGCAACCCTATAGGTGGAAACAACAATATGAACTAAC  750

seq1  CAGTAATCCCGGAGCAGGTGTTTCTAGCTGCATAGGTAGCAGAAGATGGC  797
      |||||  ||||||||||| ||||||||||||||| |||||||||||||||
seq2  CAGTATCCCCGGAGCAGGGGTTTCTAGCTGCATAAGTAGCAGAAGATGGC  800

seq1  CTGGTCAGCCATCATTGGGACATTTAATGTC-TAAAAGGGGAAGCTTTCT  846
      ||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||
seq2  CTGGTCAGCCATC-TTGGGACATTT-ATGTCTTAAAAGGAGAAGCCTTCT  848

seq1  GGATGTG  853
       ||||||
seq2  -GATGTG  854